Wall clock time and date at job start Sun Mar 29 2020 22:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.20763 * 119.99671 * 2 1 4 4 C 1.50698 * 120.00187 * 179.97438 * 2 1 3 5 5 C 1.52997 * 109.47244 * 174.94983 * 4 2 1 6 6 C 1.50694 * 112.84986 * 300.60220 * 5 4 2 7 7 O 1.21288 * 120.00230 * 124.18634 * 6 5 4 8 8 N 1.34776 * 120.00119 * 304.18838 * 6 5 4 9 9 C 1.46498 * 120.00096 * 174.79973 * 8 6 5 10 10 C 1.50704 * 109.47243 * 179.97438 * 9 8 6 11 11 H 1.07997 * 119.99621 * 0.02562 * 10 9 8 12 12 C 1.37882 * 120.00061 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99600 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 119.99774 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47272 * 89.99861 * 14 12 10 16 16 H 1.48508 * 109.46635 * 209.99565 * 14 12 10 17 17 H 1.48493 * 109.47053 * 329.99325 * 14 12 10 18 18 C 1.53783 * 113.61119 * 169.40533 * 5 4 2 19 19 C 1.53956 * 87.01664 * 220.04892 * 18 5 4 20 20 C 1.53779 * 113.61189 * 71.79880 * 5 4 2 21 21 H 1.08996 * 109.47373 * 270.00138 * 1 2 3 22 22 H 1.09001 * 109.47264 * 30.00048 * 1 2 3 23 23 H 1.09004 * 109.46936 * 150.00002 * 1 2 3 24 24 H 1.09002 * 109.46816 * 294.95287 * 4 2 1 25 25 H 1.09001 * 109.46785 * 54.94928 * 4 2 1 26 26 H 0.96997 * 119.99939 * 354.79159 * 8 6 5 27 27 H 1.08996 * 109.47227 * 299.99693 * 9 8 6 28 28 H 1.08999 * 109.47239 * 59.99885 * 9 8 6 29 29 H 0.97006 * 119.99772 * 180.02562 * 13 12 10 30 30 H 1.08993 * 113.61617 * 334.56455 * 18 5 4 31 31 H 1.08997 * 113.61160 * 105.47440 * 18 5 4 32 32 H 1.09005 * 113.53782 * 270.81441 * 19 18 5 33 33 H 1.09000 * 113.66717 * 139.93973 * 19 18 5 34 34 H 1.08999 * 113.61342 * 254.52670 * 20 5 4 35 35 H 1.09000 * 113.61744 * 25.43462 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2606 -1.3051 0.0006 5 6 3.7599 -1.0283 -0.1265 6 6 4.1123 -0.2811 -1.3868 7 8 4.7198 0.7666 -1.3209 8 7 3.7523 -0.7769 -2.5872 9 6 3.9932 0.0028 -3.8039 10 6 3.5033 -0.7703 -5.0012 11 1 3.0568 -1.7447 -4.8689 12 6 3.6242 -0.2331 -6.2653 13 7 3.1962 -0.9076 -7.3100 14 14 4.3958 1.4527 -6.4938 15 1 5.8607 1.3046 -6.6866 16 1 3.8036 2.1105 -7.6863 17 1 4.1363 2.2831 -5.2904 18 6 4.6379 -2.2662 0.1216 19 6 5.5979 -1.3333 0.8822 20 6 4.3847 -0.4250 1.1425 21 1 -0.3634 0.0000 1.0276 22 1 -0.3634 0.8900 -0.5138 23 1 -0.3633 -0.8900 -0.5139 24 1 2.0667 -1.8360 0.9326 25 1 1.9311 -1.9152 -0.8405 26 1 3.3339 -1.6500 -2.6456 27 1 3.4590 0.9507 -3.7397 28 1 5.0613 0.1939 -3.9075 29 1 3.2816 -0.5298 -8.1994 30 1 4.1654 -3.0168 0.7551 31 1 5.0661 -2.6872 -0.7880 32 1 6.3565 -0.8770 0.2462 33 1 6.0137 -1.7767 1.7870 34 1 4.6087 0.6382 1.0559 35 1 3.8428 -0.6714 2.0556 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001635343576.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:16 Heat of formation + Delta-G solvation = -89.342042 kcal Electronic energy + Delta-G solvation = -17612.855443 eV Core-core repulsion = 14803.352840 eV Total energy + Delta-G solvation = -2809.502603 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.92864 -39.87014 -38.36228 -36.17178 -34.45616 -32.50277 -30.57220 -29.52409 -26.55166 -25.61748 -23.97796 -22.34140 -20.56850 -20.42560 -18.69062 -17.62523 -17.15814 -16.87162 -16.40592 -16.34103 -15.93730 -15.68557 -15.39646 -14.88245 -14.56678 -14.03237 -13.93580 -13.54516 -13.30983 -13.11083 -13.04684 -12.86225 -12.77010 -12.48716 -12.00395 -11.84939 -11.69732 -11.46793 -11.19867 -10.95827 -10.64424 -10.40199 -9.94584 -8.44461 -6.50365 1.13024 1.26024 1.28748 1.41992 1.75349 2.23196 2.42414 2.90546 3.11541 3.54173 3.69966 3.78010 3.89983 4.03859 4.34360 4.44269 4.55905 4.72563 4.75826 4.76695 4.81844 4.88206 4.90649 4.95422 5.05248 5.18999 5.20856 5.22816 5.27844 5.51858 5.53564 6.06495 6.49782 6.70666 6.84979 7.13159 7.45012 8.69937 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.025260 B = 0.007285 C = 0.006621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.193440 B = 3842.711330 C = 4227.940024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.334 3.666 3 O -0.498 6.498 4 C -0.153 4.153 5 C -0.105 4.105 6 C 0.524 3.476 7 O -0.592 6.592 8 N -0.707 5.707 9 C 0.235 3.765 10 C -0.543 4.543 11 H 0.066 0.934 12 C 0.033 3.967 13 N -0.925 5.925 14 Si 0.929 3.071 15 H -0.265 1.265 16 H -0.268 1.268 17 H -0.271 1.271 18 C -0.106 4.106 19 C -0.143 4.143 20 C -0.111 4.111 21 H 0.121 0.879 22 H 0.065 0.935 23 H 0.110 0.890 24 H 0.159 0.841 25 H 0.119 0.881 26 H 0.408 0.592 27 H 0.000 1.000 28 H 0.004 0.996 29 H 0.273 0.727 30 H 0.139 0.861 31 H 0.063 0.937 32 H 0.046 0.954 33 H 0.100 0.900 34 H 0.039 0.961 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.260 -6.243 18.632 20.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.212 3.788 3 O -0.375 6.375 4 C -0.189 4.189 5 C -0.108 4.108 6 C 0.311 3.689 7 O -0.473 6.473 8 N -0.357 5.357 9 C 0.111 3.889 10 C -0.581 4.581 11 H 0.084 0.916 12 C -0.168 4.168 13 N -0.564 5.564 14 Si 0.753 3.247 15 H -0.189 1.189 16 H -0.192 1.192 17 H -0.196 1.196 18 C -0.143 4.143 19 C -0.181 4.181 20 C -0.148 4.148 21 H 0.139 0.861 22 H 0.084 0.916 23 H 0.129 0.871 24 H 0.176 0.824 25 H 0.137 0.863 26 H 0.243 0.757 27 H 0.018 0.982 28 H 0.022 0.978 29 H 0.083 0.917 30 H 0.157 0.843 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.119 0.881 34 H 0.058 0.942 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.555 -4.940 18.437 19.415 hybrid contribution 0.237 0.810 -0.988 1.300 sum -3.318 -4.129 17.449 18.235 Atomic orbital electron populations 1.22307 0.91793 1.05311 1.06109 1.25437 0.93810 0.90504 0.69033 1.90530 1.73025 1.36900 1.37005 1.22338 0.90861 0.97447 1.08291 1.21876 0.97176 0.99210 0.92533 1.20755 0.77750 0.84979 0.85395 1.90591 1.42823 1.26084 1.87801 1.45933 1.61882 1.22106 1.05759 1.19008 0.94828 0.91618 0.83399 1.21237 1.41433 1.04960 0.90427 0.91562 1.25484 0.95066 1.00771 0.95515 1.69954 1.47276 1.39745 0.99398 0.85986 0.79711 0.80675 0.78284 1.18941 1.19226 1.19636 1.23075 0.95440 0.94545 1.01291 1.22847 0.96350 0.97613 1.01263 1.22820 0.97072 0.98975 0.95957 0.86080 0.91583 0.87132 0.82371 0.86256 0.75653 0.98234 0.97830 0.91738 0.84313 0.91809 0.93485 0.88139 0.94178 0.86464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.34 10.25 71.24 0.73 -2.61 16 2 C 0.33 8.53 6.90 29.10 0.20 8.73 16 3 O -0.50 -18.95 15.14 -1.33 -0.02 -18.97 16 4 C -0.15 -2.86 4.94 29.85 0.15 -2.71 16 5 C -0.10 -2.84 0.59 -52.40 -0.03 -2.87 16 6 C 0.52 21.58 5.09 87.66 0.45 22.02 16 7 O -0.59 -30.64 15.76 -2.93 -0.05 -30.69 16 8 N -0.71 -30.12 5.46 -466.79 -2.55 -32.67 16 9 C 0.24 12.36 4.50 85.63 0.39 12.75 16 10 C -0.54 -30.62 9.83 25.60 0.25 -30.37 16 11 H 0.07 3.83 7.84 -2.91 -0.02 3.81 16 12 C 0.03 1.88 5.47 84.66 0.46 2.34 16 13 N -0.93 -55.42 13.96 21.45 0.30 -55.12 16 14 Si 0.93 45.89 27.47 68.60 1.88 47.78 16 15 H -0.26 -12.65 7.11 99.48 0.71 -11.94 16 16 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 17 H -0.27 -13.80 6.54 99.48 0.65 -13.15 16 18 C -0.11 -2.11 7.24 31.18 0.23 -1.89 16 19 C -0.14 -3.37 7.81 31.18 0.24 -3.13 16 20 C -0.11 -2.91 6.25 31.12 0.19 -2.71 16 21 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 22 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.11 1.30 8.12 -2.38 -0.02 1.28 16 24 H 0.16 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.12 1.89 7.78 -2.39 -0.02 1.87 16 26 H 0.41 14.70 7.93 -92.71 -0.74 13.96 16 27 H 0.00 -0.01 7.20 -2.39 -0.02 -0.03 16 28 H 0.00 0.21 7.57 -2.39 -0.02 0.19 16 29 H 0.27 15.25 8.31 -92.70 -0.77 14.48 16 30 H 0.14 1.48 8.10 -2.39 -0.02 1.46 16 31 H 0.06 1.44 8.09 -2.39 -0.02 1.42 16 32 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 33 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.04 1.43 7.36 -2.39 -0.02 1.41 16 35 H 0.12 2.14 8.10 -2.39 -0.02 2.12 16 Total: -1.00 -81.05 294.52 3.12 -77.93 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 0.29 Total: 12.19 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: 3.26 Total: -0.45 kcal Atomic # 7 Polarization: -85.54 SS G_CDS: -2.25 Total: -87.79 kcal Atomic # 8 Polarization: -49.59 SS G_CDS: -0.07 Total: -49.65 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.88 Total: 47.78 kcal Total: -81.05 3.12 -77.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001635343576.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.411 kcal (2) G-P(sol) polarization free energy of solvation -81.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds