Wall clock time and date at job start Sun Mar 29 2020 22:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42905 * 109.47412 * 2 1 4 4 C 1.35773 * 117.00176 * 180.02562 * 3 2 1 5 5 C 1.35120 * 125.84195 * 179.97438 * 4 3 2 6 6 C 1.41455 * 106.79238 * 180.02562 * 5 4 3 7 7 C 1.34441 * 106.89523 * 359.97438 * 6 5 4 8 8 C 1.50699 * 125.73864 * 179.97438 * 7 6 5 9 9 N 1.46909 * 109.46766 * 90.00355 * 8 7 6 10 10 C 1.46893 * 110.99966 * 179.97438 * 9 8 7 11 11 H 1.09003 * 109.47432 * 325.00490 * 10 9 8 12 12 C 1.53006 * 109.46630 * 85.00200 * 10 9 8 13 13 C 1.50697 * 109.47486 * 204.99800 * 10 9 8 14 14 H 1.08000 * 119.99617 * 0.02562 * 13 10 9 15 15 C 1.37875 * 120.00092 * 179.97438 * 13 10 9 16 16 N 1.31513 * 120.00225 * 0.02562 * 15 13 10 17 17 Si 1.86804 * 119.99820 * 180.02562 * 15 13 10 18 18 H 1.48498 * 109.46905 * 60.00768 * 17 15 13 19 19 H 1.48500 * 109.46858 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47178 * 300.00430 * 17 15 13 21 21 O 1.34332 * 125.83965 * 0.02562 * 4 3 2 22 22 H 1.08999 * 109.47560 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.47224 * 300.00826 * 1 2 3 24 24 H 1.09006 * 109.46960 * 60.00135 * 1 2 3 25 25 H 1.08995 * 109.47570 * 239.99373 * 2 1 3 26 26 H 1.09002 * 109.47152 * 119.99396 * 2 1 3 27 27 H 1.08003 * 126.60680 * 0.02562 * 5 4 3 28 28 H 1.07997 * 126.55147 * 179.73843 * 6 5 4 29 29 H 1.09001 * 109.46972 * 210.00243 * 8 7 6 30 30 H 1.08991 * 109.47298 * 330.00646 * 8 7 6 31 31 H 1.00905 * 110.99583 * 56.04812 * 9 8 7 32 32 H 1.09000 * 109.47205 * 299.99185 * 12 10 9 33 33 H 1.08994 * 109.47527 * 60.00089 * 12 10 9 34 34 H 1.09006 * 109.46835 * 179.97438 * 12 10 9 35 35 H 0.96998 * 120.00123 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3524 1.5252 -0.0005 5 6 3.9933 2.7147 -0.0011 6 6 5.3793 2.4322 -0.0021 7 6 5.5052 1.0937 -0.0016 8 6 6.8055 0.3319 -0.0028 9 7 7.2297 0.0851 1.3819 10 6 8.4964 -0.6577 1.4199 11 1 8.5299 -1.3618 0.5885 12 6 9.6658 0.3223 1.3057 13 6 8.5979 -1.4115 2.7209 14 1 7.8009 -1.3456 3.4467 15 6 9.7078 -2.1859 2.9841 16 7 10.6782 -2.2665 2.1001 17 14 9.8333 -3.1208 4.5966 18 1 8.6980 -4.0717 4.7070 19 1 11.1139 -3.8716 4.6350 20 1 9.7879 -2.1619 5.7296 21 8 4.2748 0.5486 -0.0016 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5140 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 3.5355 3.6929 -0.0009 28 1 6.1828 3.1538 -0.0068 29 1 6.6684 -0.6200 -0.5160 30 1 7.5682 0.9158 -0.5178 31 1 6.5113 -0.3991 1.8993 32 1 9.5925 0.8674 0.3647 33 1 9.6324 1.0264 2.1371 34 1 10.6058 -0.2289 1.3344 35 1 11.4592 -2.8111 2.2855 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001651494409.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:05 Heat of formation + Delta-G solvation = -29.548396 kcal Electronic energy + Delta-G solvation = -16657.398437 eV Core-core repulsion = 13850.488681 eV Total energy + Delta-G solvation = -2806.909756 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.42343 -38.56000 -36.00951 -33.08964 -32.71036 -31.77501 -29.87156 -27.39331 -25.32295 -24.19311 -23.16889 -21.58703 -20.28226 -19.81788 -18.59049 -16.87008 -16.70242 -15.33464 -15.12772 -14.87018 -14.77493 -14.17728 -13.54898 -13.36522 -12.83947 -12.69863 -12.63764 -12.47400 -12.17633 -11.80823 -11.68309 -11.22068 -11.05140 -10.90904 -10.80343 -10.32082 -10.17103 -10.06406 -9.59980 -8.88809 -8.50532 -7.73887 -7.35517 -6.05359 -4.12115 1.99169 2.54365 2.87929 3.30205 3.33317 3.34546 3.37845 4.38705 4.69957 4.74029 5.04528 5.12118 5.19645 5.25713 5.33122 5.45331 5.52646 5.70665 5.83254 5.88418 6.03020 6.10437 6.25663 6.72411 6.82195 7.01930 7.09469 7.16971 7.43117 7.47898 7.74481 7.84178 8.22489 8.30764 8.58064 8.96647 9.53851 11.00923 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.030469 B = 0.004779 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.738950 B = 5857.070684 C = 6515.987368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.049 3.951 3 O -0.271 6.271 4 C 0.169 3.831 5 C -0.231 4.231 6 C -0.171 4.171 7 C -0.005 4.005 8 C 0.141 3.859 9 N -0.683 5.683 10 C 0.211 3.789 11 H 0.004 0.996 12 C -0.126 4.126 13 C -0.520 4.520 14 H 0.060 0.940 15 C 0.063 3.937 16 N -0.890 5.890 17 Si 0.898 3.102 18 H -0.278 1.278 19 H -0.287 1.287 20 H -0.276 1.276 21 O -0.205 6.205 22 H 0.080 0.920 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.150 0.850 28 H 0.153 0.847 29 H 0.036 0.964 30 H 0.097 0.903 31 H 0.334 0.666 32 H 0.005 0.995 33 H 0.033 0.967 34 H 0.082 0.918 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.681 5.204 -5.587 16.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.187 6.187 4 C 0.075 3.925 5 C -0.251 4.251 6 C -0.191 4.191 7 C -0.053 4.053 8 C 0.012 3.988 9 N -0.315 5.315 10 C 0.104 3.896 11 H 0.021 0.979 12 C -0.184 4.184 13 C -0.559 4.559 14 H 0.078 0.922 15 C -0.139 4.139 16 N -0.528 5.528 17 Si 0.726 3.274 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.201 1.201 21 O -0.106 6.106 22 H 0.099 0.901 23 H 0.086 0.914 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.168 0.832 28 H 0.171 0.829 29 H 0.054 0.946 30 H 0.115 0.885 31 H 0.151 0.849 32 H 0.024 0.976 33 H 0.052 0.948 34 H 0.100 0.900 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.387 5.546 -5.551 16.388 hybrid contribution -0.225 -1.465 0.627 1.609 sum -14.613 4.081 -4.924 15.951 Atomic orbital electron populations 1.21779 0.92348 1.03111 1.03517 1.22782 0.96020 0.81271 1.02488 1.86421 1.12650 1.29227 1.90376 1.20247 0.80453 0.87027 1.04724 1.20753 0.92774 0.96056 1.15540 1.21330 0.95794 0.94997 1.06967 1.22432 0.82745 0.92956 1.07187 1.20420 0.87188 0.97285 0.93928 1.60868 1.07379 1.54438 1.08793 1.19165 0.84194 0.89807 0.96466 0.97874 1.21734 1.01923 0.98222 0.96513 1.21198 1.04694 1.27358 1.02610 0.92218 1.24906 0.95547 0.96473 0.96973 1.69880 1.08336 1.39949 1.34683 0.86561 0.77212 0.79830 0.83802 1.20341 1.21250 1.20138 1.83914 1.15960 1.36900 1.73802 0.90110 0.91380 0.91475 0.91665 0.91450 0.83242 0.82919 0.94617 0.88454 0.84871 0.97579 0.94778 0.89957 0.92800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.28 37.16 0.38 -0.77 16 2 C 0.05 0.53 6.41 37.16 0.24 0.77 16 3 O -0.27 -3.74 10.21 -42.17 -0.43 -4.17 16 4 C 0.17 2.65 7.87 29.62 0.23 2.88 16 5 C -0.23 -3.46 10.94 -39.47 -0.43 -3.90 16 6 C -0.17 -2.70 10.80 -39.70 -0.43 -3.12 16 7 C 0.00 -0.08 6.83 -35.65 -0.24 -0.32 16 8 C 0.14 2.60 6.01 -4.97 -0.03 2.57 16 9 N -0.68 -14.80 6.29 -109.22 -0.69 -15.49 16 10 C 0.21 5.30 2.60 -68.87 -0.18 5.13 16 11 H 0.00 0.10 7.80 -51.93 -0.40 -0.31 16 12 C -0.13 -3.08 9.19 37.16 0.34 -2.74 16 13 C -0.52 -14.26 8.59 -34.44 -0.30 -14.55 16 14 H 0.06 1.62 7.62 -52.49 -0.40 1.22 16 15 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 16 N -0.89 -25.22 11.32 55.43 0.63 -24.59 16 17 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 O -0.20 -3.50 10.16 -18.24 -0.19 -3.69 16 22 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.15 1.88 8.06 -52.48 -0.42 1.46 16 28 H 0.15 2.15 8.06 -52.49 -0.42 1.72 16 29 H 0.04 0.66 8.05 -51.93 -0.42 0.24 16 30 H 0.10 1.70 7.44 -51.93 -0.39 1.32 16 31 H 0.33 7.28 8.21 -39.29 -0.32 6.96 16 32 H 0.01 0.12 7.45 -51.93 -0.39 -0.27 16 33 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 35 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 LS Contribution 299.60 15.07 4.51 4.51 Total: -1.00 -29.14 299.60 -6.84 -35.98 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -5.15 Total: 3.68 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: -0.51 Total: -12.43 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: -0.06 Total: -40.08 kcal Atomic # 8 Polarization: -7.24 SS G_CDS: -0.62 Total: -7.85 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.14 -6.84 -35.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651494409.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.430 kcal (2) G-P(sol) polarization free energy of solvation -29.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds