Wall clock time and date at job start Sun Mar 29 2020 22:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42905 * 109.47412 * 2 1 4 4 C 1.35773 * 117.00176 * 180.02562 * 3 2 1 5 5 C 1.35120 * 125.84195 * 179.97438 * 4 3 2 6 6 C 1.41455 * 106.79238 * 180.02562 * 5 4 3 7 7 C 1.34441 * 106.89523 * 359.97438 * 6 5 4 8 8 C 1.50699 * 125.73864 * 179.97438 * 7 6 5 9 9 N 1.46909 * 109.46766 * 90.00355 * 8 7 6 10 10 C 1.46893 * 110.99966 * 179.97438 * 9 8 7 11 11 H 1.09003 * 109.47432 * 325.00490 * 10 9 8 12 12 C 1.53006 * 109.46630 * 85.00200 * 10 9 8 13 13 C 1.50697 * 109.47486 * 204.99800 * 10 9 8 14 14 H 1.08000 * 119.99617 * 0.02562 * 13 10 9 15 15 C 1.37875 * 120.00092 * 179.97438 * 13 10 9 16 16 N 1.31513 * 120.00225 * 0.02562 * 15 13 10 17 17 Si 1.86804 * 119.99820 * 180.02562 * 15 13 10 18 18 H 1.48498 * 109.46905 * 60.00768 * 17 15 13 19 19 H 1.48500 * 109.46858 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47178 * 300.00430 * 17 15 13 21 21 O 1.34332 * 125.83965 * 0.02562 * 4 3 2 22 22 H 1.08999 * 109.47560 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.47224 * 300.00826 * 1 2 3 24 24 H 1.09006 * 109.46960 * 60.00135 * 1 2 3 25 25 H 1.08995 * 109.47570 * 239.99373 * 2 1 3 26 26 H 1.09002 * 109.47152 * 119.99396 * 2 1 3 27 27 H 1.08003 * 126.60680 * 0.02562 * 5 4 3 28 28 H 1.07997 * 126.55147 * 179.73843 * 6 5 4 29 29 H 1.09001 * 109.46972 * 210.00243 * 8 7 6 30 30 H 1.08991 * 109.47298 * 330.00646 * 8 7 6 31 31 H 1.00905 * 110.99583 * 56.04812 * 9 8 7 32 32 H 1.09000 * 109.47205 * 299.99185 * 12 10 9 33 33 H 1.08994 * 109.47527 * 60.00089 * 12 10 9 34 34 H 1.09006 * 109.46835 * 179.97438 * 12 10 9 35 35 H 0.96998 * 120.00123 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3524 1.5252 -0.0005 5 6 3.9933 2.7147 -0.0011 6 6 5.3793 2.4322 -0.0021 7 6 5.5052 1.0937 -0.0016 8 6 6.8055 0.3319 -0.0028 9 7 7.2297 0.0851 1.3819 10 6 8.4964 -0.6577 1.4199 11 1 8.5299 -1.3618 0.5885 12 6 9.6658 0.3223 1.3057 13 6 8.5979 -1.4115 2.7209 14 1 7.8009 -1.3456 3.4467 15 6 9.7078 -2.1859 2.9841 16 7 10.6782 -2.2665 2.1001 17 14 9.8333 -3.1208 4.5966 18 1 8.6980 -4.0717 4.7070 19 1 11.1139 -3.8716 4.6350 20 1 9.7879 -2.1619 5.7296 21 8 4.2748 0.5486 -0.0016 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5140 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 3.5355 3.6929 -0.0009 28 1 6.1828 3.1538 -0.0068 29 1 6.6684 -0.6200 -0.5160 30 1 7.5682 0.9158 -0.5178 31 1 6.5113 -0.3991 1.8993 32 1 9.5925 0.8674 0.3647 33 1 9.6324 1.0264 2.1371 34 1 10.6058 -0.2289 1.3344 35 1 11.4592 -2.8111 2.2855 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001651494409.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:04 Heat of formation + Delta-G solvation = -47.344595 kcal Electronic energy + Delta-G solvation = -16658.170138 eV Core-core repulsion = 13850.488681 eV Total energy + Delta-G solvation = -2807.681457 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.66110 -39.60977 -37.81121 -34.80514 -34.08113 -32.76488 -31.49300 -28.95740 -27.33434 -25.58947 -24.19220 -22.75597 -21.83827 -21.44604 -19.72979 -18.64549 -18.00461 -16.99355 -16.39450 -16.30839 -16.10169 -15.71047 -15.28003 -14.55574 -14.28914 -13.86280 -13.80576 -13.67215 -13.39904 -13.18984 -13.06636 -12.79787 -12.72045 -12.58904 -12.21246 -12.16716 -11.98344 -11.89022 -10.94631 -10.80708 -10.57807 -9.20887 -8.91281 -8.13990 -6.28418 0.72488 1.38780 1.42855 1.44622 1.52283 1.66592 2.25173 2.41849 3.14586 3.68560 3.87429 3.92207 3.98626 4.03784 4.25026 4.35737 4.54902 4.59803 4.83999 4.84612 4.86197 4.89845 5.03884 5.09618 5.16508 5.19895 5.45510 5.53007 5.64270 5.82639 5.84966 6.21677 6.29886 6.38800 6.67259 6.91994 7.41664 8.91218 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.030469 B = 0.004779 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.738950 B = 5857.070684 C = 6515.987368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.040 3.960 3 O -0.274 6.274 4 C 0.164 3.836 5 C -0.235 4.235 6 C -0.160 4.160 7 C -0.032 4.032 8 C 0.147 3.853 9 N -0.680 5.680 10 C 0.214 3.786 11 H -0.023 1.023 12 C -0.115 4.115 13 C -0.542 4.542 14 H 0.057 0.943 15 C 0.016 3.984 16 N -0.915 5.915 17 Si 0.962 3.038 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.272 1.272 21 O -0.218 6.218 22 H 0.102 0.898 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.175 0.825 28 H 0.170 0.830 29 H 0.031 0.969 30 H 0.108 0.892 31 H 0.331 0.669 32 H 0.029 0.971 33 H 0.028 0.972 34 H 0.058 0.942 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.864 5.747 -5.284 17.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.034 4.034 3 O -0.190 6.190 4 C 0.071 3.929 5 C -0.255 4.255 6 C -0.180 4.180 7 C -0.080 4.080 8 C 0.018 3.982 9 N -0.312 5.312 10 C 0.106 3.894 11 H -0.006 1.006 12 C -0.173 4.173 13 C -0.580 4.580 14 H 0.075 0.925 15 C -0.183 4.183 16 N -0.554 5.554 17 Si 0.787 3.213 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.197 1.197 21 O -0.120 6.120 22 H 0.120 0.880 23 H 0.088 0.912 24 H 0.091 0.909 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.192 0.808 28 H 0.188 0.812 29 H 0.049 0.951 30 H 0.126 0.874 31 H 0.148 0.852 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.077 0.923 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.589 6.098 -5.257 17.545 hybrid contribution 0.048 -1.615 0.480 1.686 sum -15.541 4.482 -4.777 16.865 Atomic orbital electron populations 1.21805 0.89726 1.04639 1.03889 1.23078 0.98081 0.79971 1.02311 1.86439 1.11513 1.30962 1.90084 1.20622 0.81067 0.87094 1.04147 1.21096 0.92414 0.96959 1.15012 1.21630 0.96809 0.94590 1.04955 1.22180 0.82442 0.93403 1.09942 1.20335 0.88450 0.97478 0.91930 1.60795 1.06186 1.53205 1.10968 1.18990 0.86098 0.89633 0.94667 1.00577 1.21559 1.00465 0.97732 0.97549 1.21526 1.04873 1.28140 1.03485 0.92528 1.25690 0.95181 0.97263 1.00187 1.70000 1.08706 1.40438 1.36285 0.85555 0.77367 0.78570 0.79783 1.19735 1.20719 1.19710 1.83876 1.16187 1.37723 1.74206 0.87991 0.91177 0.90898 0.91540 0.91997 0.80788 0.81211 0.95110 0.87441 0.85229 0.95190 0.95243 0.92277 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 10.28 71.98 0.74 -1.17 16 2 C 0.04 0.82 6.41 71.98 0.46 1.28 16 3 O -0.27 -7.20 10.21 -68.89 -0.70 -7.91 16 4 C 0.16 4.95 7.87 67.10 0.53 5.48 16 5 C -0.24 -6.57 10.94 22.34 0.24 -6.33 16 6 C -0.16 -4.76 10.80 22.19 0.24 -4.52 16 7 C -0.03 -1.07 6.83 24.82 0.17 -0.90 16 8 C 0.15 5.37 6.01 85.55 0.51 5.89 16 9 N -0.68 -29.51 6.29 -499.46 -3.14 -32.65 16 10 C 0.21 10.89 2.60 44.17 0.11 11.01 16 11 H -0.02 -1.29 7.80 -2.39 -0.02 -1.31 16 12 C -0.11 -5.62 9.19 71.98 0.66 -4.96 16 13 C -0.54 -29.92 8.59 25.60 0.22 -29.70 16 14 H 0.06 3.08 7.62 -2.91 -0.02 3.06 16 15 C 0.02 0.90 5.30 84.65 0.45 1.35 16 16 N -0.92 -52.27 11.32 21.45 0.24 -52.03 16 17 Si 0.96 43.36 29.54 68.60 2.03 45.38 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 19 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 21 O -0.22 -7.36 10.16 16.72 0.17 -7.19 16 22 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 24 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 25 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.17 3.88 8.06 -2.91 -0.02 3.86 16 28 H 0.17 4.36 8.06 -2.91 -0.02 4.33 16 29 H 0.03 1.15 8.05 -2.39 -0.02 1.13 16 30 H 0.11 3.66 7.44 -2.39 -0.02 3.65 16 31 H 0.33 14.56 8.21 -89.69 -0.74 13.83 16 32 H 0.03 1.27 7.45 -2.39 -0.02 1.25 16 33 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.06 3.18 6.07 -2.38 -0.01 3.16 16 35 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -61.25 299.60 3.28 -57.97 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 0.34 Total: 18.99 kcal Atomic # 6 Polarization: -26.92 SS G_CDS: 4.34 Total: -22.58 kcal Atomic # 7 Polarization: -81.78 SS G_CDS: -2.90 Total: -84.68 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.53 Total: -15.10 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Total: -61.25 3.28 -57.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651494409.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.629 kcal (2) G-P(sol) polarization free energy of solvation -61.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds