Wall clock time and date at job start Sun Mar 29 2020 22:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.46996 * 2 1 4 4 C 1.50700 * 109.47543 * 120.00307 * 2 1 3 5 5 H 1.07994 * 120.00578 * 119.99536 * 4 2 1 6 6 C 1.37879 * 119.99581 * 300.00230 * 4 2 1 7 7 N 1.31522 * 119.99957 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00081 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47350 * 89.99453 * 8 6 4 10 10 H 1.48500 * 109.47382 * 209.99933 * 8 6 4 11 11 H 1.48500 * 109.47189 * 329.99850 * 8 6 4 12 12 C 1.50712 * 109.46969 * 240.00220 * 2 1 3 13 13 O 1.21283 * 119.99561 * 239.99837 * 12 2 1 14 14 N 1.34773 * 119.99914 * 60.00081 * 12 2 1 15 15 C 1.46500 * 119.99821 * 180.02562 * 14 12 2 16 16 H 1.09003 * 110.66356 * 327.16059 * 15 14 12 17 17 C 1.54993 * 110.74889 * 203.93927 * 15 14 12 18 18 C 1.55822 * 102.79183 * 241.67270 * 17 15 14 19 19 H 1.08996 * 115.39096 * 201.16186 * 18 17 15 20 20 C 1.55824 * 105.32186 * 72.69082 * 18 17 15 21 21 C 1.55005 * 102.78826 * 287.31088 * 20 18 17 22 22 C 1.55819 * 110.74791 * 90.36935 * 15 14 12 23 23 H 1.09002 * 115.39262 * 277.16083 * 22 15 14 24 24 O 1.46537 * 101.24344 * 327.58619 * 18 17 15 25 25 H 1.09001 * 109.47192 * 299.99769 * 1 2 3 26 26 H 1.09002 * 109.47165 * 60.00000 * 1 2 3 27 27 H 1.09003 * 109.47319 * 179.97438 * 1 2 3 28 28 H 0.97004 * 119.99727 * 180.02562 * 7 6 4 29 29 H 0.96996 * 119.99868 * 359.97438 * 14 12 2 30 30 H 1.09000 * 110.75025 * 0.02562 * 17 15 14 31 31 H 1.09011 * 110.74777 * 123.35048 * 17 15 14 32 32 H 1.08997 * 110.74792 * 45.64003 * 20 18 17 33 33 H 1.08995 * 110.74476 * 168.98831 * 20 18 17 34 34 H 1.08996 * 110.74666 * 118.32510 * 21 20 18 35 35 H 1.08993 * 110.74730 * 241.49414 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6033 8 14 2.3214 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3432 -0.9493 5.1120 11 1 2.4860 -2.5662 3.7119 12 6 2.0323 -0.7104 -1.2306 13 8 2.7296 -1.6965 -1.1193 14 7 1.7067 -0.2499 -2.4546 15 6 2.1946 -0.9408 -3.6508 16 1 3.1782 -1.3745 -3.4703 17 6 2.2335 0.0229 -4.8641 18 6 1.2379 -0.6395 -5.8630 19 1 1.3627 -0.3522 -6.9070 20 6 -0.1777 -0.3832 -5.2643 21 6 -0.2168 -1.3470 -4.0510 22 6 1.1839 -2.0356 -4.1067 23 1 1.2620 -2.9899 -3.5858 24 8 1.4258 -2.0596 -5.5543 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 0.7095 1.1617 3.4844 29 1 1.1488 0.5385 -2.5436 30 1 1.8904 1.0173 -4.5785 31 1 3.2360 0.0671 -5.2902 32 1 -0.2775 0.6521 -4.9385 33 1 -0.9540 -0.6387 -5.9855 34 1 -0.3360 -0.7919 -3.1206 35 1 -1.0146 -2.0806 -4.1661 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001653997142.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:11 Heat of formation + Delta-G solvation = -73.964893 kcal Electronic energy + Delta-G solvation = -17781.498378 eV Core-core repulsion = 14972.662577 eV Total energy + Delta-G solvation = -2808.835800 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.90549 -38.41611 -34.03390 -33.74361 -31.65220 -30.70035 -29.95718 -28.40880 -25.15070 -23.00152 -22.09418 -21.31677 -19.94380 -19.34981 -17.02386 -16.35052 -15.99596 -15.62626 -15.41406 -14.40959 -14.25924 -13.72032 -13.57800 -12.81216 -12.61092 -12.56893 -12.17741 -11.79127 -11.58464 -11.55254 -11.13582 -11.01247 -10.87786 -10.72579 -10.70496 -10.29989 -10.17041 -10.06381 -9.96313 -8.99152 -8.63156 -8.42731 -8.32529 -6.04218 -4.07236 3.33475 3.39199 3.45979 3.63150 3.67171 4.08289 4.47418 4.52535 4.57638 4.71513 4.97564 5.11364 5.17781 5.22992 5.29434 5.42426 5.65167 5.77940 5.85910 5.93554 6.00809 6.09251 6.14672 6.33197 6.52237 6.59005 6.79664 6.90061 7.08176 7.45417 7.73925 7.97603 8.12740 8.42406 9.02059 9.21309 9.58556 11.03411 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.049555 B = 0.005933 C = 0.005706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.887843 B = 4718.493545 C = 4906.295962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.029 3.971 3 H 0.052 0.948 4 C -0.500 4.500 5 H 0.074 0.926 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.900 3.100 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.519 3.481 13 O -0.543 6.543 14 N -0.734 5.734 15 C 0.119 3.881 16 H 0.096 0.904 17 C -0.155 4.155 18 C 0.061 3.939 19 H 0.128 0.872 20 C -0.148 4.148 21 C -0.151 4.151 22 C 0.055 3.945 23 H 0.132 0.868 24 O -0.376 6.376 25 H 0.093 0.907 26 H 0.011 0.989 27 H 0.031 0.969 28 H 0.260 0.740 29 H 0.396 0.604 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.766 1.261 -14.726 15.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.008 3.992 3 H 0.070 0.930 4 C -0.539 4.539 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.197 1.197 12 C 0.309 3.691 13 O -0.419 6.419 14 N -0.389 5.389 15 C 0.012 3.988 16 H 0.114 0.886 17 C -0.193 4.193 18 C 0.003 3.997 19 H 0.146 0.854 20 C -0.185 4.185 21 C -0.188 4.188 22 C -0.004 4.004 23 H 0.149 0.851 24 O -0.295 6.295 25 H 0.112 0.888 26 H 0.030 0.970 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.231 0.769 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.265 0.446 -14.630 14.811 hybrid contribution -0.067 0.179 0.896 0.916 sum -2.332 0.625 -13.733 13.944 Atomic orbital electron populations 1.21745 0.96545 0.99803 1.00877 1.18877 0.94125 0.96832 0.89368 0.93039 1.21147 1.30925 1.12823 0.88995 0.90777 1.24953 0.95100 0.95085 0.99130 1.69873 1.37142 1.23129 1.23533 0.86451 0.78443 0.80275 0.82048 1.20670 1.21304 1.19744 1.22040 0.78279 0.84287 0.84479 1.90536 1.37798 1.26849 1.86700 1.46362 1.55097 1.32260 1.05228 1.22363 0.98743 0.92567 0.85109 0.88566 1.23499 1.00763 0.99193 0.95840 1.24630 0.94120 0.81932 0.99028 0.85438 1.23245 0.97352 1.00054 0.97891 1.23274 0.97467 0.98999 0.99107 1.25176 0.94427 0.99546 0.81236 0.85078 1.90071 1.91662 1.24971 1.22767 0.88823 0.97034 0.94966 0.92976 0.76950 0.89943 0.90123 0.90648 0.91076 0.89483 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 8.87 37.16 0.33 -2.61 16 2 C 0.03 0.71 2.64 -92.92 -0.25 0.46 16 3 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 4 C -0.50 -14.09 8.37 -34.44 -0.29 -14.38 16 5 H 0.07 2.21 6.75 -52.49 -0.35 1.86 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 7 N -0.90 -24.99 11.32 55.43 0.63 -24.37 16 8 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 12 C 0.52 11.50 7.15 -10.98 -0.08 11.43 16 13 O -0.54 -13.93 15.12 5.55 0.08 -13.85 16 14 N -0.73 -12.23 3.60 -51.33 -0.18 -12.42 16 15 C 0.12 1.79 3.20 -65.37 -0.21 1.58 16 16 H 0.10 1.66 7.58 -51.93 -0.39 1.27 16 17 C -0.15 -1.75 6.28 -24.17 -0.15 -1.91 16 18 C 0.06 0.66 5.71 -23.72 -0.14 0.52 16 19 H 0.13 1.06 8.14 -51.93 -0.42 0.64 16 20 C -0.15 -1.53 6.52 -24.16 -0.16 -1.69 16 21 C -0.15 -1.93 6.40 -23.97 -0.15 -2.09 16 22 C 0.05 0.81 5.64 -23.52 -0.13 0.67 16 23 H 0.13 2.04 8.14 -51.93 -0.42 1.62 16 24 O -0.38 -5.41 11.64 -35.23 -0.41 -5.82 16 25 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 26 H 0.01 0.20 7.56 -51.93 -0.39 -0.19 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.40 5.68 7.33 -40.82 -0.30 5.38 16 30 H 0.08 0.82 7.39 -51.93 -0.38 0.44 16 31 H 0.08 0.85 8.14 -51.92 -0.42 0.43 16 32 H 0.07 0.69 7.80 -51.93 -0.41 0.28 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 1.19 6.36 -51.93 -0.33 0.86 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 280.77 15.07 4.23 4.23 Total: -1.00 -30.94 280.77 -6.96 -37.90 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -4.97 Total: 4.09 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -1.32 Total: -6.51 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.44 Total: -36.78 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.33 Total: -19.67 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.94 -6.96 -37.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653997142.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.068 kcal (2) G-P(sol) polarization free energy of solvation -30.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds