Wall clock time and date at job start Sun Mar 29 2020 22:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.46996 * 2 1 4 4 C 1.50700 * 109.47543 * 120.00307 * 2 1 3 5 5 H 1.07994 * 120.00578 * 119.99536 * 4 2 1 6 6 C 1.37879 * 119.99581 * 300.00230 * 4 2 1 7 7 N 1.31522 * 119.99957 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00081 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47350 * 89.99453 * 8 6 4 10 10 H 1.48500 * 109.47382 * 209.99933 * 8 6 4 11 11 H 1.48500 * 109.47189 * 329.99850 * 8 6 4 12 12 C 1.50712 * 109.46969 * 240.00220 * 2 1 3 13 13 O 1.21283 * 119.99561 * 239.99837 * 12 2 1 14 14 N 1.34773 * 119.99914 * 60.00081 * 12 2 1 15 15 C 1.46500 * 119.99821 * 180.02562 * 14 12 2 16 16 H 1.09003 * 110.66356 * 327.16059 * 15 14 12 17 17 C 1.54993 * 110.74889 * 203.93927 * 15 14 12 18 18 C 1.55822 * 102.79183 * 241.67270 * 17 15 14 19 19 H 1.08996 * 115.39096 * 201.16186 * 18 17 15 20 20 C 1.55824 * 105.32186 * 72.69082 * 18 17 15 21 21 C 1.55005 * 102.78826 * 287.31088 * 20 18 17 22 22 C 1.55819 * 110.74791 * 90.36935 * 15 14 12 23 23 H 1.09002 * 115.39262 * 277.16083 * 22 15 14 24 24 O 1.46537 * 101.24344 * 327.58619 * 18 17 15 25 25 H 1.09001 * 109.47192 * 299.99769 * 1 2 3 26 26 H 1.09002 * 109.47165 * 60.00000 * 1 2 3 27 27 H 1.09003 * 109.47319 * 179.97438 * 1 2 3 28 28 H 0.97004 * 119.99727 * 180.02562 * 7 6 4 29 29 H 0.96996 * 119.99868 * 359.97438 * 14 12 2 30 30 H 1.09000 * 110.75025 * 0.02562 * 17 15 14 31 31 H 1.09011 * 110.74777 * 123.35048 * 17 15 14 32 32 H 1.08997 * 110.74792 * 45.64003 * 20 18 17 33 33 H 1.08995 * 110.74476 * 168.98831 * 20 18 17 34 34 H 1.08996 * 110.74666 * 118.32510 * 21 20 18 35 35 H 1.08993 * 110.74730 * 241.49414 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6033 8 14 2.3214 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3432 -0.9493 5.1120 11 1 2.4860 -2.5662 3.7119 12 6 2.0323 -0.7104 -1.2306 13 8 2.7296 -1.6965 -1.1193 14 7 1.7067 -0.2499 -2.4546 15 6 2.1946 -0.9408 -3.6508 16 1 3.1782 -1.3745 -3.4703 17 6 2.2335 0.0229 -4.8641 18 6 1.2379 -0.6395 -5.8630 19 1 1.3627 -0.3522 -6.9070 20 6 -0.1777 -0.3832 -5.2643 21 6 -0.2168 -1.3470 -4.0510 22 6 1.1839 -2.0356 -4.1067 23 1 1.2620 -2.9899 -3.5858 24 8 1.4258 -2.0596 -5.5543 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 0.7095 1.1617 3.4844 29 1 1.1488 0.5385 -2.5436 30 1 1.8904 1.0173 -4.5785 31 1 3.2360 0.0671 -5.2902 32 1 -0.2775 0.6521 -4.9385 33 1 -0.9540 -0.6387 -5.9855 34 1 -0.3360 -0.7919 -3.1206 35 1 -1.0146 -2.0806 -4.1661 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001653997142.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:10 Heat of formation + Delta-G solvation = -94.973033 kcal Electronic energy + Delta-G solvation = -17782.409359 eV Core-core repulsion = 14972.662577 eV Total energy + Delta-G solvation = -2809.746781 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.02746 -40.08928 -35.78507 -35.48993 -32.87090 -32.38012 -31.02859 -29.66151 -27.19278 -24.71313 -23.16401 -22.44066 -21.18192 -20.86469 -18.39504 -18.18848 -17.40350 -17.16366 -16.70275 -16.21272 -15.64862 -15.11385 -15.03791 -14.40252 -14.21880 -13.61154 -13.56181 -13.28949 -12.97831 -12.74743 -12.67579 -12.65580 -12.48023 -12.20774 -12.02830 -12.00349 -11.93872 -11.28351 -11.05064 -11.02170 -10.60467 -10.31007 -9.86391 -8.15487 -6.25369 1.40160 1.41151 1.52842 1.90881 2.27618 2.47898 2.95970 3.14266 3.52567 3.59855 3.74175 3.97234 4.07956 4.22019 4.29112 4.41061 4.49881 4.65598 4.75653 4.86454 4.94590 4.99592 5.01822 5.02984 5.09432 5.15389 5.19005 5.48154 5.50699 5.69853 5.76991 5.95251 6.22334 6.73404 6.86160 7.40129 7.54554 8.90169 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.049555 B = 0.005933 C = 0.005706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.887843 B = 4718.493545 C = 4906.295962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.025 3.975 3 H 0.043 0.957 4 C -0.530 4.530 5 H 0.046 0.954 6 C 0.021 3.979 7 N -0.910 5.910 8 Si 0.953 3.047 9 H -0.275 1.275 10 H -0.274 1.274 11 H -0.280 1.280 12 C 0.522 3.478 13 O -0.587 6.587 14 N -0.708 5.708 15 C 0.112 3.888 16 H 0.067 0.933 17 C -0.146 4.146 18 C 0.063 3.937 19 H 0.162 0.838 20 C -0.141 4.141 21 C -0.151 4.151 22 C 0.047 3.953 23 H 0.109 0.891 24 O -0.395 6.395 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.022 0.978 28 H 0.265 0.735 29 H 0.411 0.589 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.670 2.608 -16.247 16.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.003 3.997 3 H 0.060 0.940 4 C -0.568 4.568 5 H 0.065 0.935 6 C -0.179 4.179 7 N -0.549 5.549 8 Si 0.779 3.221 9 H -0.200 1.200 10 H -0.199 1.199 11 H -0.205 1.205 12 C 0.312 3.688 13 O -0.467 6.467 14 N -0.363 5.363 15 C 0.006 3.994 16 H 0.085 0.915 17 C -0.184 4.184 18 C 0.006 3.994 19 H 0.179 0.821 20 C -0.179 4.179 21 C -0.189 4.189 22 C -0.012 4.012 23 H 0.127 0.873 24 O -0.314 6.314 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.041 0.959 28 H 0.074 0.926 29 H 0.249 0.751 30 H 0.123 0.877 31 H 0.109 0.891 32 H 0.114 0.886 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.198 1.837 -16.192 16.607 hybrid contribution 0.225 -0.236 1.311 1.351 sum -2.974 1.602 -14.881 15.259 Atomic orbital electron populations 1.21550 0.94849 0.99410 1.01805 1.18811 0.95456 0.95923 0.89475 0.93963 1.21293 1.31553 1.12710 0.91242 0.93526 1.25565 0.95201 0.95764 1.01326 1.69943 1.37164 1.23522 1.24289 0.85628 0.78412 0.78750 0.79286 1.20046 1.19895 1.20536 1.21602 0.77968 0.83628 0.85642 1.90517 1.39905 1.28749 1.87484 1.45994 1.53995 1.32110 1.04180 1.22484 0.97405 0.93949 0.85569 0.91475 1.23512 1.01953 0.99094 0.93823 1.24990 0.94029 0.79766 1.00628 0.82108 1.23276 0.97422 1.00388 0.96785 1.23266 0.95990 0.99483 1.00112 1.25046 0.95724 0.98622 0.81782 0.87318 1.90062 1.91857 1.27519 1.21946 0.91135 0.92727 0.95903 0.92597 0.75116 0.87736 0.89116 0.88566 0.89641 0.90371 0.91043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.20 8.87 71.98 0.64 -4.56 16 2 C 0.02 1.21 2.64 -12.28 -0.03 1.18 16 3 H 0.04 2.15 8.14 -2.39 -0.02 2.13 16 4 C -0.53 -30.61 8.37 25.60 0.21 -30.39 16 5 H 0.05 2.90 6.75 -2.91 -0.02 2.88 16 6 C 0.02 1.15 5.30 84.65 0.45 1.60 16 7 N -0.91 -50.60 11.32 21.45 0.24 -50.36 16 8 Si 0.95 44.96 29.54 68.60 2.03 46.98 16 9 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 12 C 0.52 23.48 7.15 87.66 0.63 24.11 16 13 O -0.59 -31.34 15.12 -3.04 -0.05 -31.39 16 14 N -0.71 -22.93 3.60 -434.71 -1.56 -24.49 16 15 C 0.11 3.29 3.20 46.65 0.15 3.44 16 16 H 0.07 2.38 7.58 -2.39 -0.02 2.36 16 17 C -0.15 -2.86 6.28 32.25 0.20 -2.65 16 18 C 0.06 1.13 5.71 32.55 0.19 1.31 16 19 H 0.16 1.86 8.14 -2.39 -0.02 1.84 16 20 C -0.14 -2.37 6.52 32.26 0.21 -2.16 16 21 C -0.15 -3.57 6.40 32.38 0.21 -3.36 16 22 C 0.05 1.37 5.64 32.67 0.18 1.56 16 23 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 24 O -0.39 -10.71 11.64 -148.98 -1.73 -12.45 16 25 H 0.07 3.47 6.07 -2.39 -0.01 3.45 16 26 H 0.05 1.87 7.56 -2.39 -0.02 1.86 16 27 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 29 H 0.41 10.77 7.33 -92.71 -0.68 10.09 16 30 H 0.10 1.62 7.39 -2.39 -0.02 1.60 16 31 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.10 1.26 7.80 -2.39 -0.02 1.24 16 33 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.08 1.97 6.36 -2.39 -0.02 1.95 16 35 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -68.62 280.77 2.37 -66.25 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.41 Total: 15.39 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: 3.04 Total: -9.94 kcal Atomic # 7 Polarization: -73.53 SS G_CDS: -1.32 Total: -74.85 kcal Atomic # 8 Polarization: -42.05 SS G_CDS: -1.78 Total: -43.83 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -68.62 2.37 -66.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653997142.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.724 kcal (2) G-P(sol) polarization free energy of solvation -68.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds