Wall clock time and date at job start Sun Mar 29 2020 22:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46900 * 110.99972 * 2 1 4 4 C 1.50705 * 109.46826 * 66.04586 * 3 2 1 5 5 C 1.39870 * 125.89609 * 94.71843 * 4 3 2 6 6 C 1.35318 * 107.92064 * 179.86429 * 5 4 3 7 7 N 1.34944 * 107.74337 * 0.38779 * 6 5 4 8 8 C 1.46502 * 126.03669 * 179.74633 * 7 6 5 9 9 N 1.30830 * 125.90063 * 275.02171 * 4 3 2 10 10 C 1.46896 * 110.99919 * 236.04978 * 2 1 3 11 11 C 1.53001 * 109.47230 * 293.95264 * 10 2 1 12 12 H 1.08998 * 109.47065 * 59.99662 * 11 10 2 13 13 O 1.42908 * 109.46829 * 300.00177 * 11 10 2 14 14 C 1.50697 * 109.46995 * 180.02562 * 11 10 2 15 15 H 1.07991 * 120.00449 * 359.72153 * 14 11 10 16 16 C 1.37885 * 119.99686 * 179.97438 * 14 11 10 17 17 N 1.31516 * 119.99913 * 359.72095 * 16 14 11 18 18 Si 1.86798 * 119.99766 * 179.72528 * 16 14 11 19 19 H 1.48493 * 109.47326 * 90.00142 * 18 16 14 20 20 H 1.48506 * 109.46545 * 209.99892 * 18 16 14 21 21 H 1.48498 * 109.47210 * 329.99603 * 18 16 14 22 22 H 1.08996 * 109.46926 * 183.95025 * 1 2 3 23 23 H 1.08998 * 109.47045 * 303.95299 * 1 2 3 24 24 H 1.09001 * 109.47220 * 63.95437 * 1 2 3 25 25 H 1.08996 * 109.47582 * 186.04410 * 3 2 1 26 26 H 1.09006 * 109.47301 * 306.05124 * 3 2 1 27 27 H 1.08001 * 126.04232 * 359.97438 * 5 4 3 28 28 H 1.08001 * 126.12961 * 180.15129 * 6 5 4 29 29 H 1.08995 * 109.47377 * 269.98180 * 8 7 6 30 30 H 1.08994 * 109.46863 * 29.98748 * 8 7 6 31 31 H 1.09002 * 109.47038 * 149.97688 * 8 7 6 32 32 H 1.08998 * 109.47372 * 173.95115 * 10 2 1 33 33 H 1.09006 * 109.47513 * 53.95286 * 10 2 1 34 34 H 0.96704 * 113.99704 * 299.99964 * 13 11 10 35 35 H 0.97000 * 119.99651 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 1.2985 5 6 2.4485 2.1225 2.4352 6 6 1.7724 2.8099 3.3847 7 7 0.5721 3.1497 2.8701 8 6 -0.4809 3.8986 3.5605 9 7 0.5106 2.6596 1.5591 10 6 1.9954 -0.7659 -1.1376 11 6 1.6315 -2.2426 -0.9705 12 1 0.5472 -2.3474 -0.9324 13 8 2.2010 -2.7391 0.2425 14 6 2.1721 -3.0283 -2.1372 15 1 2.7165 -2.5243 -2.9219 16 6 1.9671 -4.3901 -2.2054 17 7 1.3045 -5.0041 -1.2495 18 14 2.6305 -5.3629 -3.6555 19 1 4.0041 -5.8358 -3.3476 20 1 1.7506 -6.5315 -3.9117 21 1 2.6641 -4.4951 -4.8601 22 1 -0.3633 -1.0252 0.0708 23 1 -0.3633 0.5740 0.8524 24 1 -0.3634 0.4512 -0.9233 25 1 3.0797 1.3445 -0.1082 26 1 1.5610 1.9274 -0.8309 27 1 3.4402 1.7071 2.5366 28 1 2.1280 3.0414 4.3778 29 1 -1.1407 3.2034 4.0793 30 1 -0.0291 4.5785 4.2828 31 1 -1.0560 4.4714 2.8330 32 1 3.0797 -0.6610 -1.1757 33 1 1.5611 -0.3871 -2.0629 34 1 3.1653 -2.6770 0.2785 35 1 1.1607 -5.9622 -1.2974 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001655068926.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:00 Heat of formation + Delta-G solvation = 39.821684 kcal Electronic energy + Delta-G solvation = -16971.788144 eV Core-core repulsion = 14200.179251 eV Total energy + Delta-G solvation = -2771.608893 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.03141 -37.32172 -34.88359 -33.08384 -31.99924 -30.05158 -28.90461 -27.75769 -26.00969 -24.92041 -22.42926 -21.00523 -19.89976 -19.38632 -16.93039 -16.86773 -15.54686 -14.85061 -14.73865 -14.50014 -14.47563 -13.90155 -13.57444 -13.39143 -12.93451 -12.58041 -12.55953 -12.24886 -11.89033 -11.42299 -11.13642 -10.98396 -10.88524 -10.69947 -10.46119 -10.38930 -9.99931 -9.16259 -8.90900 -8.50800 -8.43265 -8.01602 -7.53222 -5.94072 -4.12367 1.97754 2.58236 2.93824 3.31650 3.38440 3.41141 4.41276 4.49094 4.77399 4.84219 5.00404 5.09638 5.25024 5.33423 5.37082 5.76556 5.88511 5.95753 6.00863 6.08767 6.20203 6.31433 6.39435 6.59662 6.68119 6.82090 6.89352 7.09399 7.60754 7.70923 7.84498 7.88632 7.96566 8.27714 8.91931 9.54016 9.71210 11.10047 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.058648 B = 0.004557 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.310156 B = 6142.659737 C = 6168.182858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.523 5.523 3 C 0.131 3.869 4 C 0.095 3.905 5 C -0.251 4.251 6 C 0.044 3.956 7 N -0.384 5.384 8 C 0.105 3.895 9 N -0.296 5.296 10 C 0.031 3.969 11 C 0.237 3.763 12 H 0.054 0.946 13 O -0.553 6.553 14 C -0.574 4.574 15 H 0.055 0.945 16 C 0.080 3.920 17 N -0.859 5.859 18 Si 0.889 3.111 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.274 1.274 22 H 0.074 0.926 23 H 0.062 0.938 24 H 0.016 0.984 25 H 0.089 0.911 26 H 0.040 0.960 27 H 0.147 0.853 28 H 0.170 0.830 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.027 0.973 34 H 0.342 0.658 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.164 16.366 8.307 18.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.248 5.248 3 C 0.001 3.999 4 C -0.072 4.072 5 C -0.281 4.281 6 C -0.102 4.102 7 N -0.166 5.166 8 C -0.037 4.037 9 N -0.119 5.119 10 C -0.096 4.096 11 C 0.179 3.821 12 H 0.072 0.928 13 O -0.355 6.355 14 C -0.612 4.612 15 H 0.073 0.927 16 C -0.126 4.126 17 N -0.495 5.495 18 Si 0.716 3.284 19 H -0.205 1.205 20 H -0.212 1.212 21 H -0.199 1.199 22 H 0.093 0.907 23 H 0.081 0.919 24 H 0.034 0.966 25 H 0.107 0.893 26 H 0.058 0.942 27 H 0.165 0.835 28 H 0.187 0.813 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.045 0.955 34 H 0.185 0.815 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.666 16.287 8.592 18.489 hybrid contribution 1.371 -0.262 -1.266 1.884 sum -0.295 16.025 7.326 17.623 Atomic orbital electron populations 1.22382 0.87703 1.02456 0.99453 1.61973 1.07930 1.09991 1.44898 1.20462 1.00299 0.89225 0.89945 1.22242 0.91403 0.96447 0.97121 1.21399 1.03358 1.09602 0.93703 1.22456 0.87084 1.00645 0.99973 1.48465 1.13189 1.44261 1.10734 1.21766 0.89587 0.95559 0.96766 1.77317 1.21834 1.18292 0.94438 1.23125 0.99079 0.98229 0.89161 1.19320 0.94830 0.84371 0.83563 0.92812 1.86567 1.22128 1.86311 1.40489 1.21674 1.38275 0.93336 1.07930 0.92706 1.25025 0.94254 0.97866 0.95497 1.70093 1.38451 1.09336 1.31573 0.86683 0.78956 0.79721 0.83051 1.20525 1.21181 1.19895 0.90715 0.91934 0.96575 0.89261 0.94203 0.83505 0.81262 0.90989 0.89843 0.89612 0.91718 0.95460 0.81495 0.93055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 9.14 60.07 0.55 1.11 16 2 N -0.52 -10.30 4.62 -244.37 -1.13 -11.43 16 3 C 0.13 2.16 5.53 -4.97 -0.03 2.13 16 4 C 0.09 1.54 5.98 -82.41 -0.49 1.04 16 5 C -0.25 -3.53 10.74 -40.01 -0.43 -3.96 16 6 C 0.04 0.51 11.49 -17.22 -0.20 0.32 16 7 N -0.38 -4.92 4.01 -68.16 -0.27 -5.19 16 8 C 0.10 0.82 11.47 59.85 0.69 1.51 16 9 N -0.30 -4.81 11.44 33.67 0.39 -4.43 16 10 C 0.03 0.67 4.56 -3.83 -0.02 0.65 16 11 C 0.24 6.17 2.70 -27.88 -0.08 6.10 16 12 H 0.05 1.55 6.55 -51.93 -0.34 1.21 16 13 O -0.55 -14.86 12.59 -35.23 -0.44 -15.31 16 14 C -0.57 -15.99 8.76 -34.44 -0.30 -16.29 16 15 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 16 C 0.08 2.26 5.40 -17.82 -0.10 2.17 16 17 N -0.86 -25.87 12.83 55.43 0.71 -25.16 16 18 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 22 H 0.07 1.61 6.47 -51.93 -0.34 1.27 16 23 H 0.06 1.20 6.32 -51.93 -0.33 0.87 16 24 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 25 H 0.09 1.33 7.93 -51.93 -0.41 0.91 16 26 H 0.04 0.65 8.12 -51.93 -0.42 0.23 16 27 H 0.15 1.84 8.06 -52.49 -0.42 1.42 16 28 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 1.31 7.93 -51.93 -0.41 0.89 16 33 H 0.03 0.58 8.12 -51.93 -0.42 0.16 16 34 H 0.34 8.22 9.04 45.56 0.41 8.63 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 297.33 15.07 4.48 4.48 Total: -1.00 -33.90 297.33 -6.03 -39.93 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -4.34 Total: 5.98 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -0.40 Total: -5.22 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: -0.31 Total: -46.22 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.44 Total: -15.31 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -33.90 -6.03 -39.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001655068926.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.753 kcal (2) G-P(sol) polarization free energy of solvation -33.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds