Wall clock time and date at job start Sun Mar 29 2020 22:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46900 * 110.99972 * 2 1 4 4 C 1.50705 * 109.46826 * 66.04586 * 3 2 1 5 5 C 1.39870 * 125.89609 * 94.71843 * 4 3 2 6 6 C 1.35318 * 107.92064 * 179.86429 * 5 4 3 7 7 N 1.34944 * 107.74337 * 0.38779 * 6 5 4 8 8 C 1.46502 * 126.03669 * 179.74633 * 7 6 5 9 9 N 1.30830 * 125.90063 * 275.02171 * 4 3 2 10 10 C 1.46896 * 110.99919 * 236.04978 * 2 1 3 11 11 C 1.53001 * 109.47230 * 293.95264 * 10 2 1 12 12 H 1.08998 * 109.47065 * 59.99662 * 11 10 2 13 13 O 1.42908 * 109.46829 * 300.00177 * 11 10 2 14 14 C 1.50697 * 109.46995 * 180.02562 * 11 10 2 15 15 H 1.07991 * 120.00449 * 359.72153 * 14 11 10 16 16 C 1.37885 * 119.99686 * 179.97438 * 14 11 10 17 17 N 1.31516 * 119.99913 * 359.72095 * 16 14 11 18 18 Si 1.86798 * 119.99766 * 179.72528 * 16 14 11 19 19 H 1.48493 * 109.47326 * 90.00142 * 18 16 14 20 20 H 1.48506 * 109.46545 * 209.99892 * 18 16 14 21 21 H 1.48498 * 109.47210 * 329.99603 * 18 16 14 22 22 H 1.08996 * 109.46926 * 183.95025 * 1 2 3 23 23 H 1.08998 * 109.47045 * 303.95299 * 1 2 3 24 24 H 1.09001 * 109.47220 * 63.95437 * 1 2 3 25 25 H 1.08996 * 109.47582 * 186.04410 * 3 2 1 26 26 H 1.09006 * 109.47301 * 306.05124 * 3 2 1 27 27 H 1.08001 * 126.04232 * 359.97438 * 5 4 3 28 28 H 1.08001 * 126.12961 * 180.15129 * 6 5 4 29 29 H 1.08995 * 109.47377 * 269.98180 * 8 7 6 30 30 H 1.08994 * 109.46863 * 29.98748 * 8 7 6 31 31 H 1.09002 * 109.47038 * 149.97688 * 8 7 6 32 32 H 1.08998 * 109.47372 * 173.95115 * 10 2 1 33 33 H 1.09006 * 109.47513 * 53.95286 * 10 2 1 34 34 H 0.96704 * 113.99704 * 299.99964 * 13 11 10 35 35 H 0.97000 * 119.99651 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 1.2985 5 6 2.4485 2.1225 2.4352 6 6 1.7724 2.8099 3.3847 7 7 0.5721 3.1497 2.8701 8 6 -0.4809 3.8986 3.5605 9 7 0.5106 2.6596 1.5591 10 6 1.9954 -0.7659 -1.1376 11 6 1.6315 -2.2426 -0.9705 12 1 0.5472 -2.3474 -0.9324 13 8 2.2010 -2.7391 0.2425 14 6 2.1721 -3.0283 -2.1372 15 1 2.7165 -2.5243 -2.9219 16 6 1.9671 -4.3901 -2.2054 17 7 1.3045 -5.0041 -1.2495 18 14 2.6305 -5.3629 -3.6555 19 1 4.0041 -5.8358 -3.3476 20 1 1.7506 -6.5315 -3.9117 21 1 2.6641 -4.4951 -4.8601 22 1 -0.3633 -1.0252 0.0708 23 1 -0.3633 0.5740 0.8524 24 1 -0.3634 0.4512 -0.9233 25 1 3.0797 1.3445 -0.1082 26 1 1.5610 1.9274 -0.8309 27 1 3.4402 1.7071 2.5366 28 1 2.1280 3.0414 4.3778 29 1 -1.1407 3.2034 4.0793 30 1 -0.0291 4.5785 4.2828 31 1 -1.0560 4.4714 2.8330 32 1 3.0797 -0.6610 -1.1757 33 1 1.5611 -0.3871 -2.0629 34 1 3.1653 -2.6770 0.2785 35 1 1.1607 -5.9622 -1.2974 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001655068926.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:59 Heat of formation + Delta-G solvation = 13.081410 kcal Electronic energy + Delta-G solvation = -16972.947689 eV Core-core repulsion = 14200.179251 eV Total energy + Delta-G solvation = -2772.768438 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.04445 -39.00033 -36.72987 -34.22349 -34.08766 -31.11959 -30.48992 -29.24135 -27.57480 -26.36195 -24.10537 -21.95437 -21.72974 -20.52620 -19.02624 -17.79201 -16.79206 -16.65201 -16.41641 -16.21028 -15.90671 -15.25629 -15.13096 -14.62030 -14.41462 -14.11699 -13.47891 -13.34111 -13.14185 -13.02254 -12.93170 -12.78166 -12.65863 -12.50489 -12.22944 -11.97057 -11.51056 -10.96025 -10.67203 -10.23130 -10.05536 -9.42322 -9.12172 -8.10040 -6.36372 0.98457 1.42992 1.43651 1.54571 1.74213 1.84181 2.41671 3.15693 3.25039 3.67251 3.91865 4.20479 4.24834 4.34456 4.37888 4.46057 4.47919 4.53690 4.70797 4.71065 4.75165 4.89634 4.98205 5.03524 5.06514 5.19036 5.63601 5.71256 5.77749 6.01106 6.19763 6.23803 6.25979 6.77584 6.82169 7.38233 7.68108 8.94676 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.058648 B = 0.004557 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.310156 B = 6142.659737 C = 6168.182858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.533 5.533 3 C 0.134 3.866 4 C 0.071 3.929 5 C -0.279 4.279 6 C 0.060 3.940 7 N -0.384 5.384 8 C 0.095 3.905 9 N -0.334 5.334 10 C 0.049 3.951 11 C 0.237 3.763 12 H 0.017 0.983 13 O -0.570 6.570 14 C -0.588 4.588 15 H 0.062 0.938 16 C 0.025 3.975 17 N -0.902 5.902 18 Si 0.962 3.038 19 H -0.271 1.271 20 H -0.285 1.285 21 H -0.264 1.264 22 H 0.046 0.954 23 H 0.066 0.934 24 H 0.021 0.979 25 H 0.106 0.894 26 H 0.040 0.960 27 H 0.156 0.844 28 H 0.216 0.784 29 H 0.079 0.921 30 H 0.121 0.879 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.027 0.973 34 H 0.353 0.647 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.219 17.677 8.802 19.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.258 5.258 3 C 0.005 3.995 4 C -0.094 4.094 5 C -0.308 4.308 6 C -0.086 4.086 7 N -0.167 5.167 8 C -0.045 4.045 9 N -0.159 5.159 10 C -0.079 4.079 11 C 0.179 3.821 12 H 0.034 0.966 13 O -0.374 6.374 14 C -0.626 4.626 15 H 0.080 0.920 16 C -0.178 4.178 17 N -0.539 5.539 18 Si 0.787 3.213 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.188 1.188 22 H 0.065 0.935 23 H 0.085 0.915 24 H 0.040 0.960 25 H 0.124 0.876 26 H 0.058 0.942 27 H 0.174 0.826 28 H 0.233 0.767 29 H 0.098 0.902 30 H 0.140 0.860 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.045 0.955 34 H 0.198 0.802 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.610 17.627 9.079 19.837 hybrid contribution 0.989 -0.573 -1.295 1.727 sum 0.378 17.054 7.784 18.750 Atomic orbital electron populations 1.22205 0.88104 1.00639 0.99907 1.61875 1.07692 1.12185 1.44024 1.20461 1.01060 0.87169 0.90807 1.22223 0.92290 0.97374 0.97528 1.21672 1.04181 1.11181 0.93805 1.23132 0.86002 0.98389 1.01077 1.48876 1.14421 1.43600 1.09772 1.22162 0.89177 0.95987 0.97190 1.77205 1.22336 1.19487 0.96864 1.22757 0.99924 0.95438 0.89792 1.19171 0.92703 0.87302 0.82896 0.96563 1.86510 1.23165 1.86845 1.40851 1.22072 1.38008 0.93957 1.08547 0.91963 1.25926 0.94400 0.99107 0.98322 1.70245 1.40070 1.09643 1.33919 0.85523 0.78345 0.77978 0.79490 1.19613 1.21074 1.18842 0.93531 0.91522 0.96003 0.87629 0.94178 0.82627 0.76708 0.90212 0.86044 0.89602 0.90165 0.95454 0.80243 0.93061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.61 9.14 127.69 1.17 2.78 16 2 N -0.53 -21.07 4.62 -927.03 -4.28 -25.35 16 3 C 0.13 4.37 5.53 85.56 0.47 4.84 16 4 C 0.07 2.26 5.98 43.10 0.26 2.52 16 5 C -0.28 -7.40 10.74 21.99 0.24 -7.17 16 6 C 0.06 1.24 11.49 83.54 0.96 2.20 16 7 N -0.38 -9.00 4.01 -369.57 -1.48 -10.49 16 8 C 0.09 1.22 11.47 127.77 1.47 2.69 16 9 N -0.33 -10.64 11.44 -47.38 -0.54 -11.18 16 10 C 0.05 2.07 4.56 86.30 0.39 2.47 16 11 C 0.24 12.61 2.70 29.85 0.08 12.69 16 12 H 0.02 0.99 6.55 -2.39 -0.02 0.98 16 13 O -0.57 -31.22 12.59 -148.98 -1.88 -33.10 16 14 C -0.59 -32.86 8.76 25.60 0.22 -32.63 16 15 H 0.06 3.31 7.74 -2.92 -0.02 3.29 16 16 C 0.02 1.40 5.40 84.66 0.46 1.86 16 17 N -0.90 -55.29 12.83 21.45 0.28 -55.01 16 18 Si 0.96 43.85 29.54 68.60 2.03 45.87 16 19 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 20 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 21 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 22 H 0.05 2.10 6.47 -2.39 -0.02 2.09 16 23 H 0.07 2.61 6.32 -2.39 -0.02 2.59 16 24 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.11 3.01 7.93 -2.39 -0.02 3.00 16 26 H 0.04 1.29 8.12 -2.38 -0.02 1.27 16 27 H 0.16 3.66 8.06 -2.91 -0.02 3.64 16 28 H 0.22 2.21 8.06 -2.91 -0.02 2.19 16 29 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.08 3.15 7.93 -2.39 -0.02 3.13 16 33 H 0.03 1.15 8.12 -2.38 -0.02 1.14 16 34 H 0.35 17.10 9.04 -74.05 -0.67 16.43 16 35 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -73.89 297.33 0.24 -73.65 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: 0.41 Total: 23.36 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: 5.72 Total: -7.75 kcal Atomic # 7 Polarization: -96.00 SS G_CDS: -6.03 Total: -102.03 kcal Atomic # 8 Polarization: -31.22 SS G_CDS: -1.88 Total: -33.10 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -73.89 0.24 -73.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001655068926.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.727 kcal (2) G-P(sol) polarization free energy of solvation -73.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds