Wall clock time and date at job start Sun Mar 29 2020 22:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 O 1.42898 * 110.27034 * 300.41995 * 9 7 2 11 11 C 1.54592 * 110.30890 * 62.50972 * 9 7 2 12 12 C 1.55196 * 102.80300 * 96.98090 * 11 9 7 13 13 N 1.48533 * 103.23367 * 37.43310 * 12 11 9 14 14 C 1.46904 * 110.99848 * 200.25751 * 13 12 11 15 15 C 1.53006 * 109.47159 * 307.39541 * 14 13 12 16 16 C 1.54263 * 110.03278 * 292.17030 * 15 14 13 17 17 C 1.54888 * 104.19618 * 217.10464 * 16 15 14 18 18 C 1.54893 * 102.74786 * 37.93920 * 17 16 15 19 19 C 1.53868 * 110.03140 * 174.99983 * 15 14 13 20 20 C 1.47899 * 105.82058 * 320.76900 * 13 12 11 21 21 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 22 22 H 0.96704 * 114.00075 * 59.30102 * 10 9 7 23 23 H 1.09002 * 110.72407 * 215.31938 * 11 9 7 24 24 H 1.09000 * 110.72935 * 338.59896 * 11 9 7 25 25 H 1.09001 * 110.68056 * 278.98632 * 12 11 9 26 26 H 1.09004 * 110.78754 * 155.92756 * 12 11 9 27 27 H 1.09004 * 109.47148 * 67.39535 * 14 13 12 28 28 H 1.09001 * 109.46976 * 187.39905 * 14 13 12 29 29 H 1.09008 * 110.01284 * 53.60660 * 15 14 13 30 30 H 1.09002 * 110.48694 * 335.77806 * 16 15 14 31 31 H 1.08997 * 110.48903 * 98.42540 * 16 15 14 32 32 H 1.09003 * 110.75523 * 279.62942 * 17 16 15 33 33 H 1.08996 * 110.91749 * 156.33017 * 17 16 15 34 34 H 1.09000 * 110.48781 * 203.38222 * 18 17 16 35 35 H 1.09001 * 110.48223 * 80.73926 * 18 17 16 36 36 H 1.09008 * 110.03201 * 238.56815 * 19 15 14 37 37 H 1.09001 * 110.03570 * 359.97438 * 19 15 14 38 38 H 1.09002 * 109.91880 * 265.97874 * 20 13 12 39 39 H 1.09002 * 110.08119 * 144.77515 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 8 4.0115 -0.5121 -1.1462 11 6 4.0427 -0.5286 1.2960 12 6 4.3308 -1.7443 2.2166 13 7 4.8572 -2.7661 1.2758 14 6 4.7407 -4.1154 1.8450 15 6 5.3823 -4.1403 3.2338 16 6 6.9088 -3.9530 3.1140 17 6 7.4922 -4.8780 4.2108 18 6 6.5563 -6.1108 4.1516 19 6 5.1581 -5.5122 3.8934 20 6 4.0458 -2.6378 0.0459 21 1 -0.4849 0.8400 0.0004 22 1 3.7249 0.4091 -1.2130 23 1 4.9576 0.0286 1.0942 24 1 3.2847 0.1192 1.7362 25 1 3.4136 -2.0940 2.6907 26 1 5.0787 -1.4918 2.9683 27 1 3.6879 -4.3858 1.9262 28 1 5.2500 -4.8284 1.1966 29 1 4.9564 -3.3528 3.8556 30 1 7.2553 -4.2643 2.1285 31 1 7.1820 -2.9152 3.3053 32 1 7.4389 -4.3992 5.1886 33 1 8.5185 -5.1605 3.9762 34 1 6.5722 -6.6478 5.1000 35 1 6.8458 -6.7705 3.3336 36 1 4.6242 -5.3906 4.8359 37 1 4.5919 -6.1602 3.2244 38 1 3.2135 -3.3411 0.0750 39 1 4.6634 -2.8297 -0.8315 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592148042.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:49 Heat of formation + Delta-G solvation = -45.735517 kcal Electronic energy + Delta-G solvation = -18065.096887 eV Core-core repulsion = 15393.318299 eV Total energy + Delta-G solvation = -2671.778588 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.16507 -37.70613 -35.05805 -32.39996 -31.13152 -28.76148 -28.62349 -27.72700 -24.91410 -23.31631 -21.12520 -20.57233 -19.56719 -19.04862 -17.11964 -16.14240 -15.80510 -15.12192 -14.94851 -14.42133 -13.62755 -13.51061 -13.46104 -13.23355 -12.65883 -12.52938 -12.06971 -11.77842 -11.48506 -11.20265 -11.10082 -10.95292 -10.90198 -10.72708 -10.59363 -10.45859 -10.33058 -10.16399 -10.04667 -9.69166 -9.17035 -8.76861 -8.46065 -7.77849 -6.26890 -4.31181 3.11364 3.19305 3.25613 4.19938 4.43960 4.71140 4.75301 4.86815 4.94395 5.27881 5.48476 5.50538 5.57722 5.60299 5.69081 5.71599 5.74509 5.78892 5.91329 5.93269 6.05866 6.09701 6.13684 6.19375 6.26019 6.35664 6.41582 6.50852 6.59903 6.66687 6.77652 6.88166 7.02269 7.27850 7.61689 7.69881 8.29805 8.75080 8.79159 9.32977 10.85780 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.044387 B = 0.006044 C = 0.005897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.664488 B = 4631.618365 C = 4746.725059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.076 3.924 3 Si 0.843 3.157 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.232 1.232 7 C -0.535 4.535 8 H 0.078 0.922 9 C 0.211 3.789 10 O -0.575 6.575 11 C -0.151 4.151 12 C 0.046 3.954 13 N -0.516 5.516 14 C 0.054 3.946 15 C -0.093 4.093 16 C -0.105 4.105 17 C -0.129 4.129 18 C -0.123 4.123 19 C -0.121 4.121 20 C 0.062 3.938 21 H 0.267 0.733 22 H 0.349 0.651 23 H 0.057 0.943 24 H 0.072 0.928 25 H 0.045 0.955 26 H 0.067 0.933 27 H 0.034 0.966 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.051 0.949 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.564 -7.051 7.919 15.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.127 4.127 3 Si 0.670 3.330 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.156 1.156 7 C -0.572 4.572 8 H 0.096 0.904 9 C 0.171 3.829 10 O -0.383 6.383 11 C -0.190 4.190 12 C -0.082 4.082 13 N -0.240 5.240 14 C -0.075 4.075 15 C -0.112 4.112 16 C -0.143 4.143 17 C -0.166 4.166 18 C -0.161 4.161 19 C -0.159 4.159 20 C -0.065 4.065 21 H 0.077 0.923 22 H 0.198 0.802 23 H 0.075 0.925 24 H 0.090 0.910 25 H 0.064 0.936 26 H 0.085 0.915 27 H 0.052 0.948 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.218 -7.456 7.705 16.255 hybrid contribution -1.042 1.316 0.262 1.699 sum 11.176 -6.140 7.967 15.036 Atomic orbital electron populations 1.69892 1.06225 1.27270 1.49021 1.25037 0.94832 0.99142 0.93712 0.87781 0.82132 0.83928 0.79134 1.19972 1.21329 1.15630 1.21515 0.88865 0.95008 1.51844 0.90359 1.19988 0.92759 0.88538 0.81627 1.86466 1.76353 1.27041 1.48482 1.23693 0.99850 0.96836 0.98582 1.23083 0.97395 0.92607 0.95108 1.64817 1.51376 1.03065 1.04779 1.22416 0.98535 0.91783 0.94750 1.21858 0.96363 0.97042 0.95927 1.22280 0.94142 0.99282 0.98597 1.22545 0.98474 0.96315 0.99274 1.22341 0.95263 0.97504 1.00953 1.22190 0.97040 0.96332 1.00325 1.22645 0.94946 0.96642 0.92280 0.92311 0.80179 0.92453 0.90998 0.93621 0.91494 0.94789 0.91198 0.90870 0.91267 0.91824 0.91961 0.92025 0.92217 0.91834 0.92063 0.91774 0.93066 0.90940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.44 13.96 55.43 0.77 -25.67 16 2 C 0.08 2.14 5.36 -17.82 -0.10 2.04 16 3 Si 0.84 19.73 23.20 -169.99 -3.94 15.79 16 4 H -0.27 -6.27 7.04 56.52 0.40 -5.87 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.23 -5.02 4.44 56.52 0.25 -4.77 16 7 C -0.53 -14.88 8.84 -34.44 -0.30 -15.18 16 8 H 0.08 2.37 7.59 -52.49 -0.40 1.97 16 9 C 0.21 5.09 0.96 -90.42 -0.09 5.00 16 10 O -0.57 -14.23 12.91 -35.23 -0.45 -14.69 16 11 C -0.15 -3.29 4.23 -24.73 -0.10 -3.40 16 12 C 0.05 0.87 5.11 -1.76 -0.01 0.86 16 13 N -0.52 -9.60 5.22 -230.27 -1.20 -10.80 16 14 C 0.05 0.84 4.08 -3.82 -0.02 0.82 16 15 C -0.09 -1.23 2.64 -89.50 -0.24 -1.46 16 16 C -0.11 -1.30 6.19 -25.07 -0.16 -1.45 16 17 C -0.13 -1.31 6.91 -24.74 -0.17 -1.48 16 18 C -0.12 -1.21 6.83 -25.07 -0.17 -1.39 16 19 C -0.12 -1.35 6.46 -25.62 -0.17 -1.52 16 20 C 0.06 1.35 6.17 -2.76 -0.02 1.33 16 21 H 0.27 7.44 8.31 -40.82 -0.34 7.11 16 22 H 0.35 8.23 4.55 45.56 0.21 8.44 16 23 H 0.06 1.21 7.83 -51.93 -0.41 0.80 16 24 H 0.07 1.62 5.13 -51.93 -0.27 1.35 16 25 H 0.05 0.90 8.02 -51.93 -0.42 0.48 16 26 H 0.07 1.12 7.52 -51.93 -0.39 0.73 16 27 H 0.03 0.56 7.81 -51.93 -0.41 0.16 16 28 H 0.07 1.03 8.00 -51.93 -0.42 0.62 16 29 H 0.07 1.02 6.49 -51.92 -0.34 0.68 16 30 H 0.07 0.90 7.76 -51.93 -0.40 0.49 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.66 8.14 -51.92 -0.42 0.23 16 37 H 0.06 0.71 7.67 -51.93 -0.40 0.32 16 38 H 0.05 1.13 6.81 -51.93 -0.35 0.77 16 39 H 0.07 1.55 7.96 -51.93 -0.41 1.14 16 LS Contribution 287.96 15.07 4.34 4.34 Total: -1.00 -29.32 287.96 -8.24 -37.56 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -6.22 Total: 9.29 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: -1.53 Total: -15.82 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: -0.43 Total: -36.47 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -0.45 Total: -14.69 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -3.94 Total: 15.79 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.32 -8.24 -37.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592148042.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.177 kcal (2) G-P(sol) polarization free energy of solvation -29.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds