Wall clock time and date at job start Sun Mar 29 2020 23:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47347 * 2 1 4 4 C 1.53001 * 109.47254 * 119.99816 * 2 1 3 5 5 N 1.46500 * 109.47296 * 65.98077 * 4 2 1 6 6 C 1.46496 * 120.00240 * 82.48635 * 5 4 2 7 7 C 1.50694 * 109.47396 * 90.00067 * 6 5 4 8 8 H 1.08003 * 119.99853 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00299 * 180.02562 * 7 6 5 10 10 N 1.31510 * 119.99853 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99852 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47394 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47041 * 120.00125 * 11 9 7 14 14 H 1.48498 * 109.46870 * 239.99707 * 11 9 7 15 15 C 1.34774 * 119.99733 * 262.48896 * 5 4 2 16 16 O 1.21282 * 119.99867 * 184.47316 * 15 5 4 17 17 C 1.50701 * 120.00234 * 4.47517 * 15 5 4 18 18 C 1.53002 * 109.46899 * 186.91586 * 17 15 5 19 19 C 1.52998 * 117.49910 * 243.61885 * 18 17 15 20 20 C 1.52999 * 60.00342 * 252.51585 * 19 18 17 21 21 H 1.09001 * 109.47105 * 296.11062 * 1 2 3 22 22 H 1.09001 * 109.47120 * 56.11545 * 1 2 3 23 23 H 1.09001 * 109.46523 * 176.11176 * 1 2 3 24 24 H 1.08996 * 109.47805 * 239.99690 * 2 1 3 25 25 H 1.08997 * 109.47645 * 180.02562 * 3 2 1 26 26 H 1.09001 * 109.46811 * 299.99985 * 3 2 1 27 27 H 1.09002 * 109.47091 * 59.99842 * 3 2 1 28 28 H 1.08996 * 109.47234 * 305.98147 * 4 2 1 29 29 H 1.08999 * 109.47414 * 185.98087 * 4 2 1 30 30 H 1.08998 * 109.47530 * 210.00335 * 6 5 4 31 31 H 1.09003 * 109.47168 * 330.00269 * 6 5 4 32 32 H 0.97003 * 119.99726 * 180.02562 * 10 9 7 33 33 H 1.08993 * 109.46890 * 306.91371 * 17 15 5 34 34 H 1.09002 * 109.46749 * 66.91543 * 17 15 5 35 35 H 1.08998 * 115.55095 * 29.32849 * 18 17 15 36 36 H 1.09004 * 117.49767 * 0.02562 * 19 18 17 37 37 H 1.09000 * 117.49732 * 145.02092 * 19 18 17 38 38 H 1.08993 * 117.49779 * 252.51419 * 20 19 18 39 39 H 1.08997 * 117.50101 * 107.48630 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6727 -2.1377 1.1796 6 6 2.4989 -3.0717 0.4106 7 6 3.5651 -3.6519 1.3037 8 1 3.6219 -3.3543 2.3403 9 6 4.4687 -4.5618 0.7971 10 7 4.3998 -4.9237 -0.4653 11 14 5.7898 -5.2814 1.9045 12 1 5.6525 -4.7162 3.2708 13 1 5.6380 -6.7576 1.9613 14 1 7.1296 -4.9422 1.3613 15 6 0.5748 -2.5816 1.8229 16 8 0.3153 -3.7663 1.8329 17 6 -0.3306 -1.6059 2.5296 18 6 -1.3944 -2.3748 3.3158 19 6 -2.8545 -2.1862 2.8994 20 6 -2.3434 -1.5633 4.2001 21 1 -0.3633 0.4523 0.9228 22 1 -0.3633 0.5729 -0.8531 23 1 -0.3632 -1.0253 -0.0697 24 1 1.8934 -0.5138 -0.8899 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.5919 -0.2729 2.1360 29 1 3.1247 -0.6294 1.3044 30 1 1.8733 -3.8754 0.0223 31 1 2.9681 -2.5433 -0.4193 32 1 5.0353 -5.5642 -0.8215 33 1 0.2575 -0.9957 3.2151 34 1 -0.8155 -0.9628 1.7952 35 1 -1.0953 -3.3610 3.6708 36 1 -3.0571 -1.5146 2.0651 37 1 -3.5163 -3.0484 2.9803 38 1 -2.6689 -2.0158 5.1366 39 1 -2.2098 -0.4818 4.2217 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049816877.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:09:54 Heat of formation + Delta-G solvation = -27.459383 kcal Electronic energy + Delta-G solvation = -17818.128875 eV Core-core repulsion = 15147.142800 eV Total energy + Delta-G solvation = -2670.986075 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -39.39819 -36.99616 -36.13838 -33.60847 -32.22829 -29.67635 -27.23774 -26.88313 -25.40065 -22.90690 -22.27295 -20.42934 -20.21288 -18.16028 -16.56045 -16.41200 -15.65816 -15.11248 -14.82069 -14.41313 -14.07720 -13.72002 -13.27591 -13.08987 -12.58507 -12.29820 -12.14587 -11.81842 -11.56786 -11.41519 -11.38641 -11.06773 -10.88542 -10.83406 -10.71553 -10.53392 -10.31775 -10.20949 -10.07351 -9.74724 -9.54483 -8.77025 -8.40363 -7.56997 -6.00850 -4.04876 3.31633 3.39009 3.42869 3.52161 3.86663 4.08753 4.47784 4.86868 4.97555 5.04532 5.09729 5.15382 5.26832 5.33186 5.46223 5.61352 5.67858 5.69240 5.72592 5.78866 5.88023 5.91178 5.98178 6.02608 6.09674 6.19040 6.21541 6.28905 6.45493 6.54540 6.58444 7.13145 7.48997 7.62117 7.96384 8.28624 8.51196 8.95778 9.19314 9.60208 11.07243 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.019602 B = 0.007613 C = 0.006041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.111913 B = 3677.019137 C = 4633.708957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.142 4.142 4 C 0.116 3.884 5 N -0.598 5.598 6 C 0.247 3.753 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.060 3.940 10 N -0.896 5.896 11 Si 0.897 3.103 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.284 1.284 15 C 0.507 3.493 16 O -0.540 6.540 17 C -0.126 4.126 18 C -0.132 4.132 19 C -0.179 4.179 20 C -0.186 4.186 21 H 0.054 0.946 22 H 0.051 0.949 23 H 0.058 0.942 24 H 0.077 0.923 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.041 0.959 31 H 0.031 0.969 32 H 0.262 0.738 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.115 0.885 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.142 12.697 3.887 16.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.137 4.137 3 C -0.200 4.200 4 C -0.009 4.009 5 N -0.329 5.329 6 C 0.128 3.872 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.142 4.142 10 N -0.535 5.535 11 Si 0.725 3.275 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.210 1.210 15 C 0.294 3.706 16 O -0.418 6.418 17 C -0.165 4.165 18 C -0.150 4.150 19 C -0.216 4.216 20 C -0.223 4.223 21 H 0.073 0.927 22 H 0.070 0.930 23 H 0.077 0.923 24 H 0.096 0.904 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.071 0.929 33 H 0.105 0.895 34 H 0.118 0.882 35 H 0.133 0.867 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.169 11.934 3.746 15.509 hybrid contribution 0.860 -0.390 0.493 1.066 sum -8.308 11.543 4.239 14.841 Atomic orbital electron populations 1.22048 0.95843 1.01794 1.00993 1.21567 0.95767 0.96053 1.00271 1.21762 1.01227 0.95708 1.01314 1.21546 1.01058 0.81784 0.96493 1.48199 1.25625 1.08497 1.50557 1.19222 0.89375 0.87966 0.90647 1.21486 1.12943 1.24786 0.96882 0.92466 1.24935 0.97867 0.96260 0.95125 1.69944 1.37115 1.33343 1.13136 0.86463 0.81248 0.79079 0.80756 1.19828 1.20909 1.21013 1.20246 0.81582 0.89095 0.79705 1.90654 1.73206 1.17316 1.60599 1.21669 0.96727 0.98344 0.99783 1.22082 0.90327 1.00949 1.01670 1.22975 0.97507 1.02992 0.98130 1.22970 1.05125 0.99329 0.94854 0.92671 0.93023 0.92331 0.90422 0.92446 0.92886 0.92910 0.91471 0.90317 0.94127 0.95127 0.92853 0.89541 0.88225 0.86672 0.89103 0.89024 0.89033 0.89081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 7.39 37.16 0.27 -1.60 16 2 C -0.12 -1.62 3.10 -90.62 -0.28 -1.90 16 3 C -0.14 -1.56 9.19 37.16 0.34 -1.22 16 4 C 0.12 1.88 4.88 -4.04 -0.02 1.86 16 5 N -0.60 -12.66 2.25 -175.07 -0.39 -13.05 16 6 C 0.25 6.52 5.14 -5.20 -0.03 6.49 16 7 C -0.52 -15.03 9.39 -34.44 -0.32 -15.35 16 8 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 9 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 10 N -0.90 -26.96 13.29 55.43 0.74 -26.23 16 11 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 12 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 C 0.51 10.67 6.70 -10.99 -0.07 10.60 16 16 O -0.54 -13.90 15.26 5.56 0.08 -13.82 16 17 C -0.13 -1.91 4.42 -27.88 -0.12 -2.04 16 18 C -0.13 -1.95 5.36 -90.62 -0.49 -2.44 16 19 C -0.18 -2.23 10.18 -26.73 -0.27 -2.50 16 20 C -0.19 -2.11 10.25 -26.73 -0.27 -2.39 16 21 H 0.05 0.59 6.70 -51.93 -0.35 0.25 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.86 6.46 -51.93 -0.34 0.53 16 24 H 0.08 1.24 7.93 -51.93 -0.41 0.83 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.92 6.00 -51.93 -0.31 0.60 16 29 H 0.08 1.35 8.12 -51.93 -0.42 0.92 16 30 H 0.04 1.21 7.49 -51.93 -0.39 0.83 16 31 H 0.03 0.82 7.86 -51.93 -0.41 0.41 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.09 1.17 6.89 -51.93 -0.36 0.81 16 34 H 0.10 1.32 3.99 -51.93 -0.21 1.11 16 35 H 0.12 2.00 7.42 -51.93 -0.39 1.61 16 36 H 0.09 1.04 8.03 -51.93 -0.42 0.62 16 37 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 313.11 15.07 4.72 4.72 Total: -1.00 -32.57 313.11 -7.73 -40.30 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -6.50 Total: -0.25 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -1.36 Total: -8.85 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.34 Total: -39.28 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: 0.08 Total: -13.82 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.57 -7.73 -40.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049816877.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.843 kcal (2) G-P(sol) polarization free energy of solvation -32.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds