Wall clock time and date at job start Sun Mar 29 2020 21:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47473 * 2 1 4 4 C 1.46503 * 119.99679 * 90.00212 * 3 2 1 5 5 C 1.50688 * 109.47315 * 90.00264 * 4 3 2 6 6 H 1.07996 * 120.00358 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00178 * 179.97438 * 5 4 3 8 8 N 1.31521 * 120.00224 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00280 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46824 * 60.00585 * 9 7 5 11 11 H 1.48504 * 109.47189 * 180.02562 * 9 7 5 12 12 H 1.48492 * 109.47186 * 300.00252 * 9 7 5 13 13 C 1.34774 * 120.00273 * 270.00246 * 3 2 1 14 14 O 1.21275 * 119.99873 * 179.97438 * 13 3 2 15 15 C 1.50700 * 119.99626 * 359.97438 * 13 3 2 16 16 H 1.08994 * 115.55252 * 34.28472 * 15 13 3 17 17 C 1.53005 * 117.49885 * 248.60630 * 15 13 3 18 18 C 1.52998 * 59.99975 * 252.51320 * 17 15 13 19 19 C 1.53000 * 117.49832 * 107.49151 * 18 17 15 20 20 C 1.52997 * 117.50038 * 252.50920 * 18 17 15 21 21 C 1.53004 * 109.47274 * 248.62481 * 20 18 17 22 22 H 1.09002 * 109.47153 * 59.99757 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99948 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 120.00243 * 2 1 3 26 26 H 1.08998 * 109.47533 * 239.99872 * 2 1 3 27 27 H 1.09001 * 109.46688 * 210.00173 * 4 3 2 28 28 H 1.08998 * 109.47230 * 329.99640 * 4 3 2 29 29 H 0.96991 * 120.00458 * 180.02562 * 8 7 5 30 30 H 1.08999 * 117.49772 * 0.02562 * 17 15 13 31 31 H 1.09004 * 117.49477 * 144.99919 * 17 15 13 32 32 H 1.09002 * 109.47236 * 351.37354 * 19 18 17 33 33 H 1.08998 * 109.47547 * 111.37706 * 19 18 17 34 34 H 1.09006 * 109.46982 * 231.37800 * 19 18 17 35 35 H 1.09005 * 109.47318 * 8.62338 * 20 18 17 36 36 H 1.09005 * 109.47348 * 128.62293 * 20 18 17 37 37 H 1.08991 * 109.46872 * 299.99887 * 21 20 18 38 38 H 1.08998 * 109.46896 * 60.00025 * 21 20 18 39 39 H 1.09001 * 109.47187 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 1.2688 5 6 3.6858 1.8349 1.7038 6 1 4.3429 1.2308 1.0958 7 6 4.1495 2.3903 2.8775 8 7 3.3495 3.1263 3.6177 9 14 5.9135 2.0961 3.4171 10 1 6.8413 2.6186 2.3820 11 1 6.1610 2.7962 4.7031 12 1 6.1402 0.6395 3.5953 13 6 2.2430 2.0166 -1.1671 14 8 2.6469 3.1601 -1.1671 15 6 1.9923 1.3060 -2.4722 16 1 1.1574 0.6053 -2.4732 17 6 3.2091 0.9563 -3.3314 18 6 2.2660 2.0812 -3.7626 19 6 2.7733 3.5185 -3.6292 20 6 1.3466 1.8138 -4.9559 21 6 1.7823 2.6799 -6.1396 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 2.0957 3.1409 1.1385 28 1 1.5818 1.6876 2.0284 29 1 3.6757 3.5174 4.4432 30 1 4.1910 1.2398 -2.9524 31 1 3.1747 0.0254 -3.8975 32 1 3.7181 3.5213 -3.0855 33 1 2.9237 3.9443 -4.6212 34 1 2.0396 4.1138 -3.0856 35 1 1.4083 0.7615 -5.2336 36 1 0.3195 2.0585 -4.6853 37 1 1.7206 3.7320 -5.8620 38 1 2.8094 2.4351 -6.4102 39 1 1.1276 2.4890 -6.9899 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134269548.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:46 Heat of formation + Delta-G solvation = -43.667528 kcal Electronic energy + Delta-G solvation = -17797.284082 eV Core-core repulsion = 15125.595169 eV Total energy + Delta-G solvation = -2671.688913 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.24296 -38.62663 -36.82578 -34.91722 -33.03925 -31.61055 -29.52469 -28.77877 -26.00516 -24.63394 -24.47735 -23.22232 -20.17281 -19.31477 -18.61354 -18.02392 -17.05331 -16.32854 -16.05828 -15.64396 -15.39772 -14.77255 -14.65022 -14.43928 -13.98720 -13.60884 -13.53972 -13.25923 -13.23164 -13.09283 -12.98183 -12.68785 -12.55725 -12.51051 -12.16978 -11.97494 -11.88735 -11.75513 -11.60837 -10.95925 -10.69022 -10.63822 -10.23403 -9.40486 -8.23644 -6.39127 1.34123 1.38659 1.46106 1.73743 2.27659 2.43812 2.89509 3.05115 3.61028 3.73829 3.91054 4.10201 4.14418 4.22492 4.43826 4.49610 4.58241 4.63117 4.78396 4.86790 4.90253 4.93910 4.97566 5.00348 5.02498 5.10252 5.16446 5.20906 5.24215 5.36950 5.38168 5.47030 5.57077 5.64853 5.88396 6.05776 6.68712 6.84521 7.27346 7.54782 8.83136 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.028189 B = 0.006465 C = 0.005814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.051675 B = 4329.648840 C = 4814.482953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.102 3.898 3 N -0.603 5.603 4 C 0.264 3.736 5 C -0.543 4.543 6 H 0.051 0.949 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.968 3.032 10 H -0.278 1.278 11 H -0.277 1.277 12 H -0.259 1.259 13 C 0.520 3.480 14 O -0.589 6.589 15 C -0.190 4.190 16 H 0.148 0.852 17 C -0.135 4.135 18 C -0.092 4.092 19 C -0.102 4.102 20 C -0.079 4.079 21 C -0.151 4.151 22 H 0.059 0.941 23 H 0.036 0.964 24 H 0.096 0.904 25 H 0.068 0.932 26 H 0.099 0.901 27 H -0.006 1.006 28 H 0.019 0.981 29 H 0.267 0.733 30 H 0.073 0.927 31 H 0.139 0.861 32 H 0.030 0.970 33 H 0.077 0.923 34 H 0.037 0.963 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.051 0.949 38 H 0.058 0.942 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.936 -8.827 -16.558 19.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.020 4.020 3 N -0.334 5.334 4 C 0.142 3.858 5 C -0.581 4.581 6 H 0.069 0.931 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.792 3.208 10 H -0.204 1.204 11 H -0.202 1.202 12 H -0.184 1.184 13 C 0.310 3.690 14 O -0.470 6.470 15 C -0.211 4.211 16 H 0.165 0.835 17 C -0.173 4.173 18 C -0.093 4.093 19 C -0.159 4.159 20 C -0.116 4.116 21 C -0.208 4.208 22 H 0.078 0.922 23 H 0.055 0.945 24 H 0.115 0.885 25 H 0.087 0.913 26 H 0.117 0.883 27 H 0.012 0.988 28 H 0.037 0.963 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.157 0.843 32 H 0.049 0.951 33 H 0.096 0.904 34 H 0.056 0.944 35 H 0.106 0.894 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.755 -8.152 -16.350 18.879 hybrid contribution 0.857 0.448 1.245 1.577 sum -3.897 -7.704 -15.105 17.399 Atomic orbital electron populations 1.22157 0.94629 1.03481 1.01547 1.21691 0.95225 0.81515 1.03602 1.48245 1.64003 1.15037 1.06111 1.18660 0.95257 0.91366 0.80508 1.21659 0.97823 1.32068 1.06565 0.93091 1.25878 1.02502 0.94410 0.96353 1.70050 1.37859 1.34149 1.14821 0.85461 0.78851 0.79082 0.77371 1.20409 1.20161 1.18373 1.20460 0.76832 0.86040 0.85670 1.90629 1.48175 1.20405 1.87833 1.22437 1.04224 1.05599 0.88862 0.83490 1.23258 0.92635 1.00859 1.00518 1.21706 1.00848 0.93190 0.93539 1.21331 0.99840 0.94229 1.00478 1.21101 0.97336 1.01453 0.91728 1.21822 1.01879 0.99669 0.97410 0.92218 0.94463 0.88487 0.91300 0.88324 0.98826 0.96277 0.92381 0.90851 0.84262 0.95073 0.90409 0.94416 0.89428 0.91434 0.92994 0.92334 0.91068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.19 10.12 71.98 0.73 -3.46 16 2 C 0.10 3.30 5.76 86.38 0.50 3.80 16 3 N -0.60 -27.00 2.46 -826.19 -2.03 -29.03 16 4 C 0.26 14.89 5.16 85.63 0.44 15.33 16 5 C -0.54 -32.41 9.39 25.60 0.24 -32.17 16 6 H 0.05 3.02 7.81 -2.91 -0.02 2.99 16 7 C 0.01 0.44 5.46 84.65 0.46 0.90 16 8 N -0.93 -57.69 13.29 21.45 0.28 -57.40 16 9 Si 0.97 45.97 29.54 68.60 2.03 48.00 16 10 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 13 C 0.52 22.87 7.44 87.66 0.65 23.52 16 14 O -0.59 -31.55 12.68 -3.02 -0.04 -31.59 16 15 C -0.19 -5.73 4.52 -11.54 -0.05 -5.78 16 16 H 0.15 3.45 6.48 -2.39 -0.02 3.43 16 17 C -0.14 -3.47 9.52 30.60 0.29 -3.18 16 18 C -0.09 -2.46 2.47 -52.18 -0.13 -2.59 16 19 C -0.10 -3.34 7.73 71.98 0.56 -2.78 16 20 C -0.08 -1.44 6.12 30.59 0.19 -1.26 16 21 C -0.15 -2.44 8.92 71.98 0.64 -1.80 16 22 H 0.06 1.46 7.46 -2.39 -0.02 1.44 16 23 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 25 H 0.07 2.37 8.07 -2.39 -0.02 2.35 16 26 H 0.10 2.55 6.64 -2.39 -0.02 2.53 16 27 H -0.01 -0.42 7.42 -2.39 -0.02 -0.43 16 28 H 0.02 1.10 8.07 -2.39 -0.02 1.08 16 29 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 30 H 0.07 2.27 8.05 -2.39 -0.02 2.25 16 31 H 0.14 2.41 8.05 -2.38 -0.02 2.39 16 32 H 0.03 1.20 7.02 -2.39 -0.02 1.18 16 33 H 0.08 2.03 5.59 -2.39 -0.01 2.02 16 34 H 0.04 1.43 7.26 -2.38 -0.02 1.41 16 35 H 0.09 1.21 7.90 -2.38 -0.02 1.19 16 36 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 37 H 0.05 0.94 6.45 -2.39 -0.02 0.93 16 38 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -75.05 313.17 5.77 -69.28 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: 1.00 Total: 10.20 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: 4.52 Total: -9.45 kcal Atomic # 7 Polarization: -84.69 SS G_CDS: -1.74 Total: -86.44 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -0.04 Total: -31.59 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -75.05 5.77 -69.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134269548.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.614 kcal (2) G-P(sol) polarization free energy of solvation -75.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds