Wall clock time and date at job start Sun Mar 29 2020 22:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47806 * 2 1 4 4 C 1.52994 * 109.47262 * 175.69257 * 3 2 1 5 5 C 1.50698 * 112.85173 * 302.14547 * 4 3 2 6 6 O 1.21284 * 119.99911 * 114.11898 * 5 4 3 7 7 N 1.34776 * 120.00025 * 294.11662 * 5 4 3 8 8 C 1.46499 * 119.99948 * 175.00055 * 7 5 4 9 9 H 1.08999 * 109.46941 * 35.00380 * 8 7 5 10 10 C 1.52998 * 109.47247 * 275.00222 * 8 7 5 11 11 C 1.50698 * 109.47316 * 155.00110 * 8 7 5 12 12 H 1.08001 * 119.99725 * 34.10139 * 11 8 7 13 13 C 1.37880 * 120.00426 * 214.10970 * 11 8 7 14 14 N 1.31515 * 119.99965 * 183.46104 * 13 11 8 15 15 Si 1.86798 * 119.99806 * 3.45125 * 13 11 8 16 16 H 1.48504 * 109.47007 * 93.22086 * 15 13 11 17 17 H 1.48500 * 109.47067 * 213.22030 * 15 13 11 18 18 H 1.48506 * 109.47156 * 333.22108 * 15 13 11 19 19 C 1.53785 * 113.61414 * 170.94869 * 4 3 2 20 20 C 1.53960 * 87.02136 * 220.05036 * 19 4 3 21 21 C 1.53782 * 87.10861 * 25.36307 * 20 19 4 22 22 H 1.08993 * 109.47596 * 179.97438 * 1 2 3 23 23 H 1.09009 * 109.46757 * 300.00209 * 1 2 3 24 24 H 1.09001 * 109.46930 * 59.99188 * 1 2 3 25 25 H 1.09001 * 109.46930 * 120.00812 * 2 1 3 26 26 H 1.09009 * 109.46757 * 239.99791 * 2 1 3 27 27 H 1.08997 * 109.47066 * 295.69519 * 3 2 1 28 28 H 1.09003 * 109.46976 * 55.69478 * 3 2 1 29 29 H 0.97001 * 119.99976 * 355.00348 * 7 5 4 30 30 H 1.09002 * 109.47076 * 64.95402 * 10 8 7 31 31 H 1.09006 * 109.47113 * 184.95412 * 10 8 7 32 32 H 1.08999 * 109.46874 * 304.95423 * 10 8 7 33 33 H 0.96996 * 119.99537 * 179.97438 * 14 13 11 34 34 H 1.08997 * 113.61257 * 334.57029 * 19 4 3 35 35 H 1.08995 * 113.61581 * 105.47293 * 19 4 3 36 36 H 1.08998 * 113.53402 * 270.80972 * 20 19 4 37 37 H 1.08994 * 113.66689 * 139.93280 * 20 19 4 38 38 H 1.09003 * 113.61116 * 220.09478 * 21 20 19 39 39 H 1.08994 * 113.61288 * 89.19096 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5662 1.4436 0.1083 5 6 4.0660 0.7349 1.3408 6 8 4.7071 -0.2891 1.2334 7 7 3.8007 1.2389 2.5622 8 6 4.1907 0.4947 3.7623 9 1 5.1301 -0.0263 3.5774 10 6 3.1021 -0.5236 4.1072 11 6 4.3654 1.4523 4.9127 12 1 3.7358 2.3266 4.9879 13 6 5.3291 1.2124 5.8692 14 7 5.4365 2.0105 6.9090 15 14 6.4819 -0.2462 5.6882 16 1 7.7244 0.1873 5.0000 17 1 6.8206 -0.7791 7.0323 18 1 5.8171 -1.3063 4.8885 19 6 4.1978 2.8297 -0.1039 20 6 5.3039 2.1148 -0.9013 21 6 4.2759 1.0066 -1.1841 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5140 -0.8899 25 1 1.8933 -0.5140 0.8899 26 1 1.8933 -0.5139 -0.8901 27 1 1.7412 1.9335 -0.9260 28 1 1.6152 1.9781 0.8489 29 1 3.3514 2.0945 2.6468 30 1 3.0365 -1.2682 3.3138 31 1 3.3497 -1.0157 5.0478 32 1 2.1445 -0.0123 4.2057 33 1 6.1142 1.8415 7.5820 34 1 3.5870 3.4997 -0.7090 35 1 4.5521 3.2936 0.8165 36 1 6.1414 1.7867 -0.2856 37 1 5.6194 2.6557 -1.7934 38 1 4.6932 0.0009 -1.1343 39 1 3.6866 1.1773 -2.0849 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332066140.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:49 Heat of formation + Delta-G solvation = -65.248160 kcal Electronic energy + Delta-G solvation = -18089.314778 eV Core-core repulsion = 15416.690058 eV Total energy + Delta-G solvation = -2672.624720 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.68506 -38.68636 -36.63200 -35.19457 -34.36748 -31.72085 -29.30463 -27.35613 -26.54808 -25.18913 -23.42405 -22.03431 -21.55969 -20.45083 -18.70885 -17.47143 -17.16472 -16.58872 -16.32643 -15.75021 -15.37146 -14.95304 -14.67039 -14.51077 -14.35729 -14.04292 -13.38243 -13.27901 -13.19440 -13.04650 -13.00864 -12.82861 -12.48193 -12.41171 -12.00200 -11.88598 -11.79295 -11.58991 -11.24161 -11.06020 -10.94779 -10.88056 -10.53641 -9.78703 -8.41493 -6.47194 1.24738 1.30128 1.41913 1.80226 2.24235 2.45781 3.01307 3.48989 3.64041 3.82158 3.92498 4.10113 4.20649 4.31471 4.39739 4.48771 4.70077 4.75307 4.79729 4.84241 4.84843 4.87656 4.94996 5.00890 5.04746 5.09498 5.16916 5.22287 5.29596 5.34019 5.41363 5.43208 5.48231 5.54074 5.75837 6.11374 6.57383 6.92879 7.19080 7.49030 8.73592 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.025760 B = 0.007588 C = 0.006814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.707498 B = 3689.328682 C = 4107.923258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.127 4.127 3 C -0.090 4.090 4 C -0.111 4.111 5 C 0.527 3.473 6 O -0.600 6.600 7 N -0.702 5.702 8 C 0.232 3.768 9 H 0.028 0.972 10 C -0.139 4.139 11 C -0.525 4.525 12 H 0.057 0.943 13 C 0.034 3.966 14 N -0.929 5.929 15 Si 0.923 3.077 16 H -0.277 1.277 17 H -0.273 1.273 18 H -0.257 1.257 19 C -0.118 4.118 20 C -0.145 4.145 21 C -0.112 4.112 22 H 0.052 0.948 23 H 0.051 0.949 24 H 0.073 0.927 25 H 0.026 0.974 26 H 0.064 0.936 27 H 0.104 0.896 28 H 0.068 0.932 29 H 0.403 0.597 30 H 0.031 0.969 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.271 0.729 34 H 0.126 0.874 35 H 0.057 0.943 36 H 0.047 0.953 37 H 0.096 0.904 38 H 0.052 0.948 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.512 0.656 -16.883 18.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.164 4.164 3 C -0.127 4.127 4 C -0.114 4.114 5 C 0.314 3.686 6 O -0.482 6.482 7 N -0.350 5.350 8 C 0.128 3.872 9 H 0.046 0.954 10 C -0.197 4.197 11 C -0.564 4.564 12 H 0.075 0.925 13 C -0.166 4.166 14 N -0.567 5.567 15 Si 0.748 3.252 16 H -0.202 1.202 17 H -0.198 1.198 18 H -0.181 1.181 19 C -0.156 4.156 20 C -0.182 4.182 21 C -0.149 4.149 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.092 0.908 25 H 0.045 0.955 26 H 0.082 0.918 27 H 0.123 0.877 28 H 0.087 0.913 29 H 0.238 0.762 30 H 0.050 0.950 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.144 0.856 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.114 0.886 38 H 0.070 0.930 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.980 -0.038 -16.739 18.136 hybrid contribution 0.761 -0.389 0.860 1.213 sum -6.219 -0.427 -15.879 17.058 Atomic orbital electron populations 1.21721 0.94195 1.01847 1.02453 1.21503 0.97042 0.97001 1.00878 1.21535 0.90004 0.97073 1.04095 1.22072 0.97845 0.98533 0.92930 1.20684 0.78269 0.84388 0.85247 1.90590 1.42541 1.27579 1.87513 1.46308 1.59407 1.23928 1.05348 1.18906 0.94195 0.91070 0.83019 0.95391 1.22102 0.99923 0.98227 0.99497 1.21187 1.18674 1.09572 1.06944 0.92489 1.25572 0.98045 0.98349 0.94673 1.69974 1.35402 1.39584 1.11771 0.86090 0.79887 0.81243 0.77942 1.20239 1.19818 1.18112 1.23082 0.97519 0.94041 1.00911 1.22840 0.96488 0.98020 1.00896 1.22879 0.97295 0.98770 0.95988 0.92919 0.92955 0.90822 0.95471 0.91760 0.87715 0.91332 0.76244 0.94959 0.93251 0.92234 0.92008 0.85614 0.92373 0.93390 0.88561 0.92954 0.86281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.91 71.98 0.71 -2.04 16 2 C -0.13 -3.04 5.66 30.59 0.17 -2.86 16 3 C -0.09 -1.91 4.63 30.59 0.14 -1.77 16 4 C -0.11 -2.99 0.80 -52.40 -0.04 -3.03 16 5 C 0.53 20.45 5.21 87.66 0.46 20.91 16 6 O -0.60 -28.43 15.58 -3.04 -0.05 -28.48 16 7 N -0.70 -28.78 5.07 -446.10 -2.26 -31.04 16 8 C 0.23 11.29 2.18 44.24 0.10 11.39 16 9 H 0.03 1.51 4.59 -2.39 -0.01 1.50 16 10 C -0.14 -6.13 9.46 71.98 0.68 -5.45 16 11 C -0.53 -28.91 9.05 25.60 0.23 -28.68 16 12 H 0.06 3.32 8.06 -2.91 -0.02 3.29 16 13 C 0.03 1.94 5.47 84.66 0.46 2.41 16 14 N -0.93 -55.80 13.96 21.45 0.30 -55.50 16 15 Si 0.92 45.49 27.14 68.60 1.86 47.36 16 16 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 17 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 18 H -0.26 -12.53 6.52 99.48 0.65 -11.89 16 19 C -0.12 -2.67 7.24 31.18 0.23 -2.44 16 20 C -0.15 -3.51 7.81 31.18 0.24 -3.27 16 21 C -0.11 -2.72 6.84 31.12 0.21 -2.51 16 22 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 24 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.03 0.85 7.19 -2.39 -0.02 0.83 16 26 H 0.06 1.49 8.01 -2.38 -0.02 1.47 16 27 H 0.10 1.55 8.13 -2.39 -0.02 1.53 16 28 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.40 14.75 8.60 -92.71 -0.80 13.95 16 30 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.05 2.19 8.09 -2.38 -0.02 2.17 16 32 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 34 H 0.13 1.92 8.10 -2.39 -0.02 1.90 16 35 H 0.06 1.52 8.09 -2.39 -0.02 1.50 16 36 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.05 1.59 7.34 -2.39 -0.02 1.57 16 39 H 0.12 2.03 8.09 -2.39 -0.02 2.01 16 Total: -1.00 -67.93 314.47 3.60 -64.32 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: 0.15 Total: 20.67 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: 3.60 Total: -17.33 kcal Atomic # 7 Polarization: -84.58 SS G_CDS: -1.96 Total: -86.54 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -0.05 Total: -28.48 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.86 Total: 47.36 kcal Total: -67.93 3.60 -64.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332066140.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.925 kcal (2) G-P(sol) polarization free energy of solvation -67.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds