Wall clock time and date at job start Sun Mar 29 2020 22:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47023 * 2 1 4 4 C 1.52994 * 109.47451 * 239.99674 * 2 1 3 5 5 C 1.53001 * 109.47174 * 119.99317 * 2 1 3 6 6 H 1.09000 * 110.01951 * 303.48335 * 5 2 1 7 7 C 1.54272 * 110.07615 * 182.06380 * 5 2 1 8 8 C 1.54890 * 104.19461 * 217.08830 * 7 5 2 9 9 C 1.55014 * 102.75834 * 37.95249 * 8 7 5 10 10 C 1.53878 * 110.03024 * 64.87163 * 5 2 1 11 11 H 1.09005 * 110.03168 * 0.02562 * 10 5 2 12 12 N 1.46493 * 110.03352 * 238.61794 * 10 5 2 13 13 C 1.34783 * 119.99982 * 155.69120 * 12 10 5 14 14 O 1.21692 * 119.99780 * 359.97438 * 13 12 10 15 15 C 1.46371 * 120.00272 * 179.97438 * 13 12 10 16 16 H 1.08004 * 119.99974 * 6.26922 * 15 13 12 17 17 C 1.40050 * 120.00375 * 186.26898 * 15 13 12 18 18 N 1.30671 * 120.00161 * 184.67034 * 17 15 13 19 19 Si 1.86802 * 119.99878 * 4.66678 * 17 15 13 20 20 H 1.48496 * 109.47432 * 180.02562 * 19 17 15 21 21 H 1.48502 * 109.47058 * 60.00295 * 19 17 15 22 22 H 1.48501 * 109.47230 * 300.00326 * 19 17 15 23 23 H 1.09002 * 109.47393 * 300.00149 * 1 2 3 24 24 H 1.08997 * 109.47280 * 59.99994 * 1 2 3 25 25 H 1.08997 * 109.47320 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47022 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.46916 * 299.99386 * 3 2 1 28 28 H 1.09002 * 109.47158 * 59.99707 * 3 2 1 29 29 H 1.08996 * 109.47222 * 301.66621 * 4 2 1 30 30 H 1.09001 * 109.46964 * 61.66283 * 4 2 1 31 31 H 1.09004 * 109.47271 * 181.66624 * 4 2 1 32 32 H 1.09003 * 110.47793 * 335.76550 * 7 5 2 33 33 H 1.08997 * 110.48593 * 98.40877 * 7 5 2 34 34 H 1.09003 * 110.75241 * 156.25999 * 8 7 5 35 35 H 1.09005 * 110.75178 * 279.44003 * 8 7 5 36 36 H 1.08996 * 110.52502 * 203.38558 * 9 8 7 37 37 H 1.08999 * 110.50268 * 80.70037 * 9 8 7 38 38 H 0.96995 * 120.00258 * 335.68837 * 12 10 5 39 39 H 0.96995 * 119.99816 * 354.89807 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0400 -0.7211 1.2493 6 1 1.6316 -0.2513 2.1441 7 6 3.5817 -0.6842 1.2898 8 6 3.9796 -2.0650 1.8678 9 6 2.9471 -3.0196 1.2155 10 6 1.6368 -2.2054 1.2026 11 1 1.0783 -2.4121 0.2897 12 7 0.8252 -2.5421 2.3748 13 6 -0.0282 -3.5842 2.3267 14 8 -0.1248 -4.2451 1.3095 15 6 -0.8388 -3.9211 3.4980 16 1 -0.8293 -3.2767 4.3647 17 6 -1.6267 -5.0789 3.4949 18 7 -2.4196 -5.3323 4.5022 19 14 -1.5442 -6.2610 2.0508 20 1 -2.4679 -7.3989 2.2891 21 1 -0.1568 -6.7708 1.9071 22 1 -1.9425 -5.5526 0.8079 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 3.1299 1.4425 0.0005 27 1 1.6766 1.9563 -0.8901 28 1 1.6765 1.9564 0.8900 29 1 1.6525 -1.7399 -1.2642 30 1 1.7012 -0.1905 -2.1389 31 1 3.1296 -0.7472 -1.2343 32 1 3.9867 -0.5600 0.2854 33 1 3.9271 0.1169 1.9433 34 1 4.9937 -2.3309 1.5694 35 1 3.8839 -2.0713 2.9537 36 1 2.8294 -3.9224 1.8149 37 1 3.2495 -3.2721 0.1992 38 1 0.9019 -2.0151 3.1854 39 1 -2.4085 -4.7589 5.2844 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335642899.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:45 Heat of formation + Delta-G solvation = -105.332287 kcal Electronic energy + Delta-G solvation = -18291.379252 eV Core-core repulsion = 15617.016354 eV Total energy + Delta-G solvation = -2674.362898 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.11989 -39.23539 -36.15791 -35.08528 -33.98277 -29.67339 -28.90424 -28.18292 -27.99852 -27.03766 -22.58040 -22.04462 -20.83864 -20.27421 -19.01985 -17.39492 -17.31945 -16.46680 -15.93427 -15.61165 -15.23758 -15.03992 -14.93269 -14.48292 -14.25635 -14.01443 -13.29825 -13.29561 -12.88081 -12.74771 -12.52332 -12.49841 -12.37964 -12.18027 -12.08420 -11.83343 -11.74437 -11.36497 -11.21380 -11.19136 -11.17297 -11.09379 -10.07234 -9.62504 -9.19970 -7.13876 1.41833 1.51870 1.94625 2.21430 2.39419 2.96142 3.29235 3.57989 3.70942 3.82768 4.13390 4.16558 4.21842 4.50028 4.61817 4.62767 4.70495 4.73059 4.80531 4.86061 4.89090 4.94790 5.01434 5.07350 5.07805 5.15196 5.22871 5.27157 5.30723 5.39188 5.43850 5.48410 5.53840 5.59680 5.65632 5.90084 6.16919 6.63821 7.20476 8.04635 8.10657 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.031725 B = 0.007177 C = 0.006853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.370423 B = 3900.338765 C = 4084.524547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.058 4.058 3 C -0.133 4.133 4 C -0.145 4.145 5 C -0.082 4.082 6 H 0.072 0.928 7 C -0.109 4.109 8 C -0.116 4.116 9 C -0.136 4.136 10 C 0.145 3.855 11 H 0.061 0.939 12 N -0.734 5.734 13 C 0.552 3.448 14 O -0.643 6.643 15 C -0.619 4.619 16 H 0.063 0.937 17 C 0.028 3.972 18 N -0.851 5.851 19 Si 1.163 2.837 20 H -0.307 1.307 21 H -0.296 1.296 22 H -0.297 1.297 23 H 0.049 0.951 24 H 0.064 0.936 25 H 0.025 0.975 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.035 0.965 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.034 0.966 37 H 0.071 0.929 38 H 0.394 0.606 39 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.802 13.451 -7.532 20.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.059 4.059 3 C -0.190 4.190 4 C -0.202 4.202 5 C -0.101 4.101 6 H 0.090 0.910 7 C -0.146 4.146 8 C -0.154 4.154 9 C -0.175 4.175 10 C 0.040 3.960 11 H 0.079 0.921 12 N -0.383 5.383 13 C 0.358 3.642 14 O -0.538 6.538 15 C -0.656 4.656 16 H 0.082 0.918 17 C -0.186 4.186 18 N -0.479 5.479 19 Si 0.995 3.005 20 H -0.238 1.238 21 H -0.224 1.224 22 H -0.225 1.225 23 H 0.068 0.932 24 H 0.083 0.917 25 H 0.044 0.956 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.053 0.947 37 H 0.090 0.910 38 H 0.228 0.772 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.092 11.733 -8.738 18.979 hybrid contribution 0.125 1.355 1.555 2.067 sum 12.216 13.088 -7.182 19.291 Atomic orbital electron populations 1.21885 0.96027 1.00317 1.01670 1.20518 0.94328 0.96560 0.94449 1.21824 1.01822 0.93361 1.01983 1.22001 1.01914 0.99455 0.96851 1.22079 0.97174 0.92438 0.98383 0.91007 1.22486 0.92895 0.96854 1.02369 1.22479 0.98373 0.94889 0.99619 1.22792 0.96002 0.98019 1.00706 1.21630 0.90956 0.94655 0.88771 0.92080 1.45686 1.43126 1.33462 1.15986 1.18281 0.79040 0.79377 0.87505 1.90108 1.73245 1.54783 1.35641 1.22248 1.29622 1.11558 1.02157 0.91824 1.27779 0.88951 0.98614 1.03207 1.70658 1.31085 1.39946 1.06216 0.81922 0.75173 0.71848 0.71568 1.23806 1.22430 1.22503 0.93161 0.91662 0.95599 0.90972 0.92017 0.92745 0.94551 0.91807 0.90713 0.89466 0.89828 0.90008 0.92254 0.94698 0.91020 0.77249 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 8.27 71.98 0.60 -3.31 16 2 C -0.06 -1.33 0.52 -52.18 -0.03 -1.36 16 3 C -0.13 -2.24 8.21 71.98 0.59 -1.65 16 4 C -0.15 -3.21 7.92 71.98 0.57 -2.64 16 5 C -0.08 -2.08 2.06 -10.07 -0.02 -2.10 16 6 H 0.07 1.88 7.61 -2.39 -0.02 1.86 16 7 C -0.11 -2.13 5.05 31.67 0.16 -1.97 16 8 C -0.12 -2.73 6.91 31.93 0.22 -2.51 16 9 C -0.14 -4.41 6.55 31.71 0.21 -4.20 16 10 C 0.14 5.09 1.83 45.72 0.08 5.17 16 11 H 0.06 2.50 4.43 -2.38 -0.01 2.49 16 12 N -0.73 -31.26 5.03 -443.37 -2.23 -33.49 16 13 C 0.55 29.97 7.56 86.36 0.65 30.62 16 14 O -0.64 -37.86 11.74 -4.32 -0.05 -37.91 16 15 C -0.62 -36.02 9.96 24.83 0.25 -35.78 16 16 H 0.06 3.66 8.05 -2.91 -0.02 3.64 16 17 C 0.03 1.69 5.52 85.31 0.47 2.16 16 18 N -0.85 -50.36 13.64 21.84 0.30 -50.06 16 19 Si 1.16 62.82 25.99 68.60 1.78 64.60 16 20 H -0.31 -15.56 7.11 99.48 0.71 -14.85 16 21 H -0.30 -16.07 7.11 99.48 0.71 -15.36 16 22 H -0.30 -16.67 6.78 99.48 0.67 -16.00 16 23 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.02 0.89 6.79 -2.39 -0.02 0.88 16 26 H 0.07 1.00 6.95 -2.39 -0.02 0.99 16 27 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.04 1.00 6.25 -2.39 -0.01 0.98 16 30 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 31 H 0.07 1.37 6.14 -2.38 -0.01 1.36 16 32 H 0.09 1.46 5.51 -2.39 -0.01 1.45 16 33 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.03 1.36 8.04 -2.39 -0.02 1.34 16 37 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.39 15.16 8.29 -92.71 -0.77 14.39 16 39 H 0.28 15.82 8.72 -92.71 -0.81 15.01 16 Total: -1.00 -67.60 297.83 3.74 -63.86 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: 0.19 Total: 10.55 kcal Atomic # 6 Polarization: -21.31 SS G_CDS: 3.75 Total: -17.56 kcal Atomic # 7 Polarization: -81.62 SS G_CDS: -1.93 Total: -83.55 kcal Atomic # 8 Polarization: -37.86 SS G_CDS: -0.05 Total: -37.91 kcal Atomic # 14 Polarization: 62.82 SS G_CDS: 1.78 Total: 64.60 kcal Total: -67.60 3.74 -63.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335642899.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.470 kcal (2) G-P(sol) polarization free energy of solvation -67.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds