Wall clock time and date at job start Sun Mar 29 2020 22:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47049 * 2 1 4 4 C 1.53004 * 109.47074 * 240.00135 * 2 1 3 5 5 C 1.52999 * 109.46917 * 120.00032 * 2 1 3 6 6 H 1.08999 * 110.05296 * 178.18300 * 5 2 1 7 7 C 1.54263 * 110.03077 * 299.59762 * 5 2 1 8 8 C 1.54895 * 104.19410 * 142.89758 * 7 5 2 9 9 C 1.54891 * 102.74637 * 322.05916 * 8 7 5 10 10 C 1.53871 * 110.03415 * 56.76577 * 5 2 1 11 11 H 1.09007 * 110.03208 * 0.02562 * 10 5 2 12 12 N 1.46500 * 110.03196 * 121.42813 * 10 5 2 13 13 C 1.34779 * 120.00021 * 203.62275 * 12 10 5 14 14 O 1.21686 * 120.00061 * 0.02562 * 13 12 10 15 15 C 1.46377 * 119.99880 * 179.97438 * 13 12 10 16 16 H 1.07994 * 119.99960 * 5.21879 * 15 13 12 17 17 C 1.40054 * 119.99962 * 185.21510 * 15 13 12 18 18 N 1.30669 * 119.99655 * 354.76733 * 17 15 13 19 19 Si 1.86792 * 119.99930 * 174.75900 * 17 15 13 20 20 H 1.48508 * 109.46897 * 95.00030 * 19 17 15 21 21 H 1.48497 * 109.47271 * 214.99838 * 19 17 15 22 22 H 1.48501 * 109.47307 * 335.00044 * 19 17 15 23 23 H 1.09004 * 109.47149 * 304.97492 * 1 2 3 24 24 H 1.09004 * 109.47101 * 64.97425 * 1 2 3 25 25 H 1.08997 * 109.47246 * 184.97576 * 1 2 3 26 26 H 1.08993 * 109.47268 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.46788 * 300.00241 * 3 2 1 28 28 H 1.08998 * 109.46864 * 59.99924 * 3 2 1 29 29 H 1.09004 * 109.46661 * 299.99795 * 4 2 1 30 30 H 1.09003 * 109.46889 * 59.99887 * 4 2 1 31 31 H 1.08993 * 109.46775 * 179.97438 * 4 2 1 32 32 H 1.09000 * 110.49084 * 24.22084 * 7 5 2 33 33 H 1.08996 * 110.59994 * 261.62735 * 7 5 2 34 34 H 1.09000 * 110.75600 * 203.74229 * 8 7 5 35 35 H 1.08998 * 110.75669 * 80.37165 * 8 7 5 36 36 H 1.09002 * 110.48493 * 279.25901 * 9 8 7 37 37 H 1.08998 * 110.59798 * 156.68011 * 9 8 7 38 38 H 0.96998 * 120.00136 * 23.61837 * 12 10 5 39 39 H 0.97000 * 120.00073 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 3.1294 -0.7550 1.2428 7 6 1.5412 0.0017 2.5174 8 6 1.2418 -1.1446 3.5152 9 6 0.6427 -2.2438 2.6031 10 6 1.4687 -2.1489 1.3038 11 1 0.8284 -2.3282 0.4399 12 7 2.5603 -3.1256 1.3306 13 6 2.3460 -4.3876 0.9087 14 8 1.2459 -4.7157 0.5051 15 6 3.4369 -5.3632 0.9350 16 1 4.3889 -5.0972 1.3700 17 6 3.2460 -6.6418 0.3962 18 7 2.0660 -6.9987 -0.0370 19 14 4.6783 -7.8367 0.2965 20 1 4.6667 -8.7237 1.4875 21 1 4.5528 -8.6584 -0.9340 22 1 5.9542 -7.0779 0.2569 23 1 -0.3634 0.5891 0.8421 24 1 -0.3633 0.4347 -0.9312 25 1 -0.3633 -1.0238 0.0891 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6767 -1.7489 -1.2492 30 1 1.6766 -0.2074 -2.1393 31 1 3.1299 -0.7208 -1.2495 32 1 0.6343 0.5670 2.3026 33 1 2.3149 0.6595 2.9132 34 1 0.5163 -0.8257 4.2635 35 1 2.1592 -1.4936 3.9892 36 1 -0.4093 -2.0412 2.4021 37 1 0.7605 -3.2268 3.0592 38 1 3.4373 -2.8640 1.6519 39 1 1.9338 -7.8840 -0.4105 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335642900.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:49 Heat of formation + Delta-G solvation = -91.458188 kcal Electronic energy + Delta-G solvation = -18198.927508 eV Core-core repulsion = 15525.166237 eV Total energy + Delta-G solvation = -2673.761272 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.97143 -38.74370 -36.04749 -34.66745 -33.62115 -29.59021 -28.86899 -28.16803 -28.00290 -27.06743 -22.63635 -21.96366 -20.68281 -19.73512 -18.53672 -17.43720 -17.07823 -16.51216 -15.76752 -15.50393 -15.15573 -14.82237 -14.54206 -14.21577 -13.98002 -13.44631 -13.26741 -13.11313 -12.82756 -12.77403 -12.62694 -12.49389 -12.38959 -12.15855 -12.05325 -12.01239 -11.79904 -11.69199 -11.14778 -11.14122 -11.06428 -10.92701 -9.79091 -9.32882 -8.28112 -6.83280 1.37956 1.39578 1.55282 2.24342 2.49764 3.20138 3.59230 3.64205 3.81187 3.88409 4.16322 4.19998 4.26147 4.54857 4.65763 4.67612 4.73856 4.76170 4.86254 4.88817 4.93493 4.97754 5.05244 5.09238 5.12328 5.18672 5.27915 5.31218 5.32277 5.36029 5.42986 5.47084 5.62926 5.68242 5.92027 6.27886 6.44769 6.88248 7.62500 8.53973 8.71379 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.032797 B = 0.006518 C = 0.006157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.526998 B = 4294.907510 C = 4546.447860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.058 4.058 3 C -0.132 4.132 4 C -0.140 4.140 5 C -0.079 4.079 6 H 0.074 0.926 7 C -0.108 4.108 8 C -0.113 4.113 9 C -0.135 4.135 10 C 0.151 3.849 11 H 0.046 0.954 12 N -0.746 5.746 13 C 0.542 3.458 14 O -0.633 6.633 15 C -0.578 4.578 16 H 0.084 0.916 17 C 0.029 3.971 18 N -0.824 5.824 19 Si 0.995 3.005 20 H -0.262 1.262 21 H -0.273 1.273 22 H -0.249 1.249 23 H 0.076 0.924 24 H 0.060 0.940 25 H 0.031 0.969 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.019 0.981 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.027 0.973 38 H 0.389 0.611 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.188 16.044 3.265 16.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.058 4.058 3 C -0.189 4.189 4 C -0.197 4.197 5 C -0.098 4.098 6 H 0.092 0.908 7 C -0.146 4.146 8 C -0.151 4.151 9 C -0.174 4.174 10 C 0.046 3.954 11 H 0.064 0.936 12 N -0.399 5.399 13 C 0.346 3.654 14 O -0.520 6.520 15 C -0.615 4.615 16 H 0.102 0.898 17 C -0.186 4.186 18 N -0.453 5.453 19 Si 0.815 3.185 20 H -0.187 1.187 21 H -0.197 1.197 22 H -0.172 1.172 23 H 0.094 0.906 24 H 0.079 0.921 25 H 0.050 0.950 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.039 0.961 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.046 0.954 38 H 0.222 0.778 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.270 15.708 2.887 16.022 hybrid contribution 0.576 -1.186 -0.162 1.328 sum 1.845 14.522 2.725 14.891 Atomic orbital electron populations 1.21997 0.94720 1.00987 1.02471 1.20513 0.95691 0.96268 0.93314 1.21814 1.01027 0.93356 1.02675 1.21872 1.00763 0.98958 0.98121 1.22051 0.99923 0.91991 0.95872 0.90766 1.22480 1.02210 0.96871 0.93007 1.22444 1.00540 0.94799 0.97310 1.22743 0.99206 0.98402 0.97063 1.21415 0.88984 0.88555 0.96444 0.93572 1.45937 1.12937 1.10599 1.70407 1.18512 0.88482 0.81791 0.76645 1.90540 1.27925 1.79992 1.53533 1.21453 0.99383 0.97956 1.42669 0.89819 1.26951 0.99191 1.00396 0.92037 1.70200 1.24936 1.19536 1.30646 0.85050 0.77786 0.77178 0.78535 1.18708 1.19743 1.17204 0.90567 0.92058 0.94964 0.92506 0.92051 0.90943 0.96137 0.91760 0.92912 0.89733 0.89498 0.90139 0.91995 0.92019 0.95361 0.77763 0.91721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 7.91 71.98 0.57 -3.08 16 2 C -0.06 -1.47 0.53 -52.18 -0.03 -1.49 16 3 C -0.13 -2.43 8.23 71.98 0.59 -1.83 16 4 C -0.14 -4.26 8.26 71.98 0.59 -3.67 16 5 C -0.08 -2.23 2.07 -10.07 -0.02 -2.25 16 6 H 0.07 2.08 7.60 -2.39 -0.02 2.07 16 7 C -0.11 -2.37 5.07 31.67 0.16 -2.21 16 8 C -0.11 -2.97 6.91 31.89 0.22 -2.75 16 9 C -0.13 -4.97 6.53 31.67 0.21 -4.76 16 10 C 0.15 5.98 1.74 45.71 0.08 6.05 16 11 H 0.05 2.17 4.47 -2.38 -0.01 2.16 16 12 N -0.75 -34.56 5.04 -443.39 -2.23 -36.80 16 13 C 0.54 32.33 7.73 86.36 0.67 33.00 16 14 O -0.63 -43.57 14.72 -4.30 -0.06 -43.64 16 15 C -0.58 -33.77 9.54 24.83 0.24 -33.53 16 16 H 0.08 4.41 7.85 -2.91 -0.02 4.39 16 17 C 0.03 1.66 5.50 85.31 0.47 2.13 16 18 N -0.82 -51.87 11.85 21.84 0.26 -51.61 16 19 Si 1.00 42.11 29.56 68.60 2.03 44.14 16 20 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 21 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 22 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 23 H 0.08 1.58 6.29 -2.38 -0.01 1.56 16 24 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.03 1.01 6.13 -2.39 -0.01 1.00 16 26 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.07 1.11 7.06 -2.39 -0.02 1.09 16 29 H 0.02 0.79 6.68 -2.39 -0.02 0.77 16 30 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.08 1.62 5.58 -2.39 -0.01 1.61 16 33 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.03 1.24 8.04 -2.39 -0.02 1.22 16 38 H 0.39 15.85 8.27 -92.71 -0.77 15.09 16 39 H 0.27 15.57 8.29 -92.71 -0.77 14.80 16 Total: -1.00 -76.30 302.04 4.00 -72.30 By element: Atomic # 1 Polarization: 29.74 SS G_CDS: 0.26 Total: 30.00 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: 3.75 Total: -14.40 kcal Atomic # 7 Polarization: -86.43 SS G_CDS: -1.98 Total: -88.41 kcal Atomic # 8 Polarization: -43.57 SS G_CDS: -0.06 Total: -43.64 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -76.30 4.00 -72.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335642900.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.157 kcal (2) G-P(sol) polarization free energy of solvation -76.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds