Wall clock time and date at job start Sun Mar 29 2020 22:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46446 * 2 1 4 4 C 1.53002 * 109.47131 * 240.00280 * 2 1 3 5 5 C 1.52999 * 109.46909 * 119.99809 * 2 1 3 6 6 H 1.09001 * 110.53829 * 204.55048 * 5 2 1 7 7 C 1.54891 * 110.48805 * 327.16637 * 5 2 1 8 8 C 1.54889 * 102.74607 * 156.62332 * 7 5 2 9 9 C 1.54271 * 104.19422 * 322.05246 * 8 7 5 10 10 C 1.53872 * 106.59977 * 23.61684 * 9 8 7 11 11 H 1.08999 * 110.07719 * 119.30315 * 10 9 8 12 12 N 1.46497 * 110.02929 * 240.71469 * 10 9 8 13 13 C 1.34776 * 119.99958 * 280.15330 * 12 10 9 14 14 O 1.21693 * 119.99997 * 0.02562 * 13 12 10 15 15 C 1.46376 * 120.00174 * 180.02562 * 13 12 10 16 16 H 1.08001 * 119.99974 * 0.02562 * 15 13 12 17 17 C 1.40054 * 120.00053 * 180.02562 * 15 13 12 18 18 N 1.30670 * 119.99965 * 0.02562 * 17 15 13 19 19 Si 1.86802 * 120.00084 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.46694 * 89.99947 * 19 17 15 21 21 H 1.48492 * 109.47176 * 210.00102 * 19 17 15 22 22 H 1.48503 * 109.46869 * 330.00102 * 19 17 15 23 23 H 1.08998 * 109.47449 * 331.41708 * 1 2 3 24 24 H 1.09002 * 109.46965 * 91.41659 * 1 2 3 25 25 H 1.09001 * 109.46848 * 211.41170 * 1 2 3 26 26 H 1.09004 * 109.46757 * 179.97438 * 3 2 1 27 27 H 1.08993 * 109.47631 * 299.99605 * 3 2 1 28 28 H 1.08998 * 109.47548 * 60.00593 * 3 2 1 29 29 H 1.08999 * 109.47158 * 323.88967 * 4 2 1 30 30 H 1.08999 * 109.47185 * 83.89389 * 4 2 1 31 31 H 1.09003 * 109.46479 * 203.89173 * 4 2 1 32 32 H 1.08997 * 110.75097 * 274.93353 * 7 5 2 33 33 H 1.08999 * 110.75447 * 38.30280 * 7 5 2 34 34 H 1.09004 * 110.48254 * 203.37635 * 8 7 5 35 35 H 1.08993 * 110.60459 * 80.79209 * 8 7 5 36 36 H 1.09003 * 110.03167 * 264.32818 * 9 8 7 37 37 H 1.09000 * 110.02534 * 142.89739 * 9 8 7 38 38 H 0.96995 * 120.00410 * 100.16129 * 12 10 9 39 39 H 0.96996 * 120.00464 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2493 6 1 3.0428 -0.3795 1.5056 7 6 1.0712 -0.4986 2.4372 8 6 1.3685 -1.7121 3.3526 9 6 1.6020 -2.8787 2.3705 10 6 2.0289 -2.2487 1.0332 11 1 3.0255 -2.5941 0.7581 12 7 1.0690 -2.6001 -0.0162 13 6 1.1311 -3.8089 -0.6090 14 8 1.9843 -4.6086 -0.2722 15 6 0.1723 -4.1598 -1.6579 16 1 -0.5846 -3.4500 -1.9571 17 6 0.2365 -5.4162 -2.2735 18 7 1.1521 -6.2753 -1.9111 19 14 -0.9866 -5.8638 -3.6125 20 1 -0.4413 -5.4640 -4.9346 21 1 -1.2228 -7.3297 -3.5973 22 1 -2.2679 -5.1534 -3.3701 23 1 -0.3634 0.9024 0.4916 24 1 -0.3633 -0.0254 -1.0274 25 1 -0.3633 -0.8771 0.5356 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9563 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.3784 -1.5553 -1.4828 30 1 2.0581 -0.0257 -2.0884 31 1 3.0470 -1.0963 -1.0665 32 1 1.2971 0.4364 2.9497 33 1 0.0352 -0.5144 2.0989 34 1 0.5151 -1.9214 3.9977 35 1 2.2620 -1.5320 3.9502 36 1 0.6805 -3.4459 2.2387 37 1 2.3915 -3.5299 2.7454 38 1 0.3888 -1.9628 -0.2845 39 1 1.1969 -7.1452 -2.3377 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335642901.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:53 Heat of formation + Delta-G solvation = -51.341208 kcal Electronic energy + Delta-G solvation = -18615.690688 eV Core-core repulsion = 15943.669019 eV Total energy + Delta-G solvation = -2672.021669 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = -0.67 seconds Orbital eigenvalues (eV) -41.51543 -38.48888 -36.03802 -34.70738 -33.81457 -29.53724 -28.86843 -28.33682 -27.81615 -27.17010 -22.57040 -21.74553 -20.80415 -19.73369 -18.81063 -17.54503 -16.62095 -16.46094 -15.98655 -15.46003 -15.22549 -14.81051 -14.60168 -14.08128 -13.94297 -13.67368 -13.29958 -13.18284 -12.87303 -12.68119 -12.56836 -12.35168 -12.25635 -12.11538 -11.99507 -11.87535 -11.84792 -11.56712 -11.17904 -11.10059 -10.96570 -10.91119 -9.77034 -9.06430 -8.25847 -6.81900 1.38425 1.40346 1.54969 2.24802 2.51482 3.22883 3.60833 3.62065 3.79868 3.88962 4.17852 4.21503 4.25531 4.57254 4.60615 4.65850 4.72025 4.78995 4.87375 4.89467 4.91717 4.96372 5.11180 5.11971 5.16308 5.23530 5.25366 5.32104 5.34010 5.36857 5.48463 5.53625 5.62927 5.72776 5.92765 6.30531 6.44531 6.89528 7.65614 8.56027 8.73758 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.028930 B = 0.007874 C = 0.006917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.612184 B = 3554.981971 C = 4046.798542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.057 4.057 3 C -0.130 4.130 4 C -0.160 4.160 5 C -0.080 4.080 6 H 0.087 0.913 7 C -0.118 4.118 8 C -0.113 4.113 9 C -0.133 4.133 10 C 0.152 3.848 11 H 0.027 0.973 12 N -0.742 5.742 13 C 0.538 3.462 14 O -0.634 6.634 15 C -0.575 4.575 16 H 0.083 0.917 17 C 0.029 3.971 18 N -0.823 5.823 19 Si 0.993 3.007 20 H -0.262 1.262 21 H -0.274 1.274 22 H -0.248 1.248 23 H 0.086 0.914 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.025 0.975 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.037 0.963 37 H 0.041 0.959 38 H 0.401 0.599 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.129 15.487 5.081 16.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.057 4.057 3 C -0.187 4.187 4 C -0.217 4.217 5 C -0.099 4.099 6 H 0.105 0.895 7 C -0.155 4.155 8 C -0.151 4.151 9 C -0.172 4.172 10 C 0.046 3.954 11 H 0.045 0.955 12 N -0.403 5.403 13 C 0.342 3.658 14 O -0.522 6.522 15 C -0.612 4.612 16 H 0.101 0.899 17 C -0.186 4.186 18 N -0.453 5.453 19 Si 0.813 3.187 20 H -0.187 1.187 21 H -0.199 1.199 22 H -0.171 1.171 23 H 0.105 0.895 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.044 0.956 32 H 0.112 0.888 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.244 0.756 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.443 14.775 5.319 15.892 hybrid contribution -0.192 -0.860 -0.773 1.173 sum -2.635 13.915 4.545 14.873 Atomic orbital electron populations 1.22306 0.94425 1.02522 1.02180 1.20446 0.95870 0.96069 0.93314 1.21876 1.00695 0.93557 1.02600 1.22549 1.00872 1.00756 0.97544 1.22370 1.00537 0.91238 0.95787 0.89507 1.22794 0.99836 0.98280 0.94551 1.22326 1.02047 0.93860 0.96857 1.22553 0.99704 0.98597 0.96367 1.21231 0.91702 0.95192 0.87305 0.95465 1.46778 1.35833 1.17293 1.40396 1.18533 0.84554 0.80394 0.82340 1.90541 1.41442 1.51667 1.68510 1.21414 1.16697 1.01860 1.21230 0.89922 1.26936 0.97104 0.95343 0.99193 1.70200 1.31230 1.06227 1.37605 0.85091 0.78466 0.77890 0.77302 1.18653 1.19881 1.17143 0.89545 0.92540 0.92539 0.93055 0.92110 0.90840 0.91444 0.92962 0.95557 0.88764 0.90120 0.90898 0.90466 0.94390 0.94038 0.75587 0.91792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.80 6.33 71.98 0.46 -3.35 16 2 C -0.06 -1.49 0.62 -52.18 -0.03 -1.53 16 3 C -0.13 -2.57 8.06 71.98 0.58 -1.99 16 4 C -0.16 -5.45 7.40 71.98 0.53 -4.91 16 5 C -0.08 -2.27 2.34 -9.72 -0.02 -2.29 16 6 H 0.09 2.27 7.96 -2.39 -0.02 2.25 16 7 C -0.12 -2.67 5.90 31.89 0.19 -2.49 16 8 C -0.11 -2.95 6.83 31.67 0.22 -2.73 16 9 C -0.13 -5.07 6.48 31.32 0.20 -4.87 16 10 C 0.15 6.12 2.13 45.72 0.10 6.21 16 11 H 0.03 1.30 7.79 -2.39 -0.02 1.28 16 12 N -0.74 -33.91 2.47 -443.38 -1.09 -35.00 16 13 C 0.54 31.84 7.14 86.36 0.62 32.46 16 14 O -0.63 -43.62 14.79 -4.32 -0.06 -43.69 16 15 C -0.58 -33.29 9.54 24.83 0.24 -33.05 16 16 H 0.08 4.31 7.85 -2.91 -0.02 4.28 16 17 C 0.03 1.65 5.50 85.31 0.47 2.12 16 18 N -0.82 -51.68 11.83 21.84 0.26 -51.42 16 19 Si 0.99 41.88 29.56 68.60 2.03 43.91 16 20 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 21 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 22 H -0.25 -9.68 7.11 99.48 0.71 -8.98 16 23 H 0.09 1.56 7.77 -2.39 -0.02 1.55 16 24 H 0.06 1.39 7.82 -2.39 -0.02 1.37 16 25 H 0.06 1.56 4.54 -2.39 -0.01 1.55 16 26 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 27 H 0.06 1.12 8.12 -2.39 -0.02 1.10 16 28 H 0.07 1.15 8.11 -2.39 -0.02 1.13 16 29 H 0.07 2.77 4.51 -2.39 -0.01 2.76 16 30 H 0.05 1.56 7.91 -2.39 -0.02 1.54 16 31 H 0.03 0.98 7.58 -2.39 -0.02 0.96 16 32 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.08 1.84 5.23 -2.39 -0.01 1.83 16 34 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.04 1.64 7.92 -2.39 -0.02 1.63 16 37 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.40 16.06 3.15 -92.71 -0.29 15.76 16 39 H 0.27 15.52 8.29 -92.71 -0.77 14.75 16 Total: -1.00 -75.89 293.50 5.40 -70.48 By element: Atomic # 1 Polarization: 31.39 SS G_CDS: 0.74 Total: 32.13 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: 3.54 Total: -16.42 kcal Atomic # 7 Polarization: -85.58 SS G_CDS: -0.84 Total: -86.42 kcal Atomic # 8 Polarization: -43.62 SS G_CDS: -0.06 Total: -43.69 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -75.89 5.40 -70.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335642901.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.143 kcal (2) G-P(sol) polarization free energy of solvation -75.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.67 seconds