Wall clock time and date at job start Sun Mar 29 2020 22:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47296 * 2 1 4 4 C 1.53003 * 109.47343 * 186.11355 * 3 2 1 5 5 H 1.08997 * 109.58376 * 188.29183 * 4 3 2 6 6 C 1.53195 * 109.70155 * 308.64493 * 4 3 2 7 7 H 1.08998 * 109.49478 * 54.54477 * 6 4 3 8 8 C 1.52998 * 109.49533 * 294.44533 * 6 4 3 9 9 C 1.53036 * 109.31010 * 174.48979 * 6 4 3 10 10 C 1.53066 * 109.66343 * 298.70072 * 9 6 4 11 11 C 1.53195 * 109.29620 * 61.15308 * 10 9 6 12 12 N 1.46927 * 108.89158 * 305.57970 * 11 10 9 13 13 C 1.34775 * 120.63348 * 233.51547 * 12 11 10 14 14 O 1.21690 * 120.00143 * 175.81647 * 13 12 11 15 15 C 1.46382 * 119.99749 * 355.81350 * 13 12 11 16 16 H 1.08000 * 119.99570 * 354.75647 * 15 13 12 17 17 C 1.40038 * 119.99823 * 174.75813 * 15 13 12 18 18 N 1.30674 * 120.00597 * 359.97438 * 17 15 13 19 19 Si 1.86804 * 120.00008 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47071 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47410 * 119.99667 * 19 17 15 22 22 H 1.48503 * 109.46929 * 239.99799 * 19 17 15 23 23 H 1.08999 * 109.47129 * 299.99908 * 1 2 3 24 24 H 1.09002 * 109.46885 * 60.00401 * 1 2 3 25 25 H 1.09005 * 109.47317 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47494 * 239.99739 * 2 1 3 27 27 H 1.09003 * 109.47331 * 120.00227 * 2 1 3 28 28 H 1.08998 * 109.47063 * 66.10980 * 3 2 1 29 29 H 1.09000 * 109.46637 * 306.11162 * 3 2 1 30 30 H 1.08998 * 109.47730 * 59.99961 * 8 6 4 31 31 H 1.08999 * 109.46749 * 180.02562 * 8 6 4 32 32 H 1.08998 * 109.47380 * 299.99672 * 8 6 4 33 33 H 1.09004 * 109.45715 * 58.65774 * 9 6 4 34 34 H 1.09004 * 109.46235 * 178.62316 * 9 6 4 35 35 H 1.09001 * 109.38950 * 301.27800 * 10 9 6 36 36 H 1.09005 * 109.62612 * 181.16835 * 10 9 6 37 37 H 1.08996 * 109.58925 * 185.72448 * 11 10 9 38 38 H 1.09003 * 109.58509 * 65.43443 * 11 10 9 39 39 H 0.96996 * 120.00810 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5623 1.4452 -0.1536 5 1 3.9425 2.4562 -0.0070 6 6 4.1876 0.5061 0.8826 7 1 3.7397 -0.4837 0.7936 8 6 3.9367 1.0566 2.2879 9 6 5.6944 0.4090 0.6334 10 6 5.9498 -0.1707 -0.7600 11 6 5.3411 0.7592 -1.8145 12 7 3.9225 0.9736 -1.4977 13 6 2.9698 0.7424 -2.4226 14 8 1.7946 0.8502 -2.1256 15 6 3.3488 0.3617 -3.7843 16 1 4.3899 0.3483 -4.0712 17 6 2.3614 0.0149 -4.7148 18 7 1.1017 0.0306 -4.3674 19 14 2.8450 -0.4716 -6.4523 20 1 4.3223 -0.4101 -6.5905 21 1 2.3788 -1.8545 -6.7270 22 1 2.2182 0.4636 -7.4207 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.7687 1.9238 0.9396 29 1 1.5900 1.9869 -0.8302 30 1 2.8634 1.1283 2.4638 31 1 4.3822 0.3883 3.0247 32 1 4.3862 2.0456 2.3763 33 1 6.1379 1.4026 0.6980 34 1 6.1457 -0.2395 1.3844 35 1 5.4874 -1.1551 -0.8328 36 1 7.0230 -0.2589 -0.9289 37 1 5.4304 0.3022 -2.7999 38 1 5.8659 1.7145 -1.8057 39 1 0.4178 -0.2092 -5.0120 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335717966.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:44 Heat of formation + Delta-G solvation = -44.948453 kcal Electronic energy + Delta-G solvation = -18848.817084 eV Core-core repulsion = 16177.072626 eV Total energy + Delta-G solvation = -2671.744458 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.08797 -37.79563 -35.86729 -34.53596 -33.60180 -32.22601 -29.33400 -27.59376 -26.84822 -24.74210 -23.16568 -21.97271 -21.66061 -19.74998 -18.15287 -17.61311 -16.43429 -16.21198 -15.84991 -15.48488 -15.26281 -14.87411 -14.39143 -14.09199 -13.94051 -13.43468 -13.26592 -13.20256 -13.01731 -12.80601 -12.63106 -12.48058 -12.32738 -12.08997 -12.04777 -11.91460 -11.52874 -11.31960 -11.20011 -11.10742 -10.90631 -10.61872 -9.01166 -8.71306 -8.07558 -6.68827 1.38660 1.40217 1.55009 2.26643 2.57919 2.96302 3.71882 3.93152 3.99554 4.08138 4.26354 4.38268 4.40046 4.51247 4.55411 4.69049 4.77202 4.82484 4.93966 4.97395 4.97743 5.00042 5.09049 5.13217 5.18244 5.27139 5.35679 5.41277 5.43653 5.48539 5.54878 5.67269 5.79196 5.89222 5.98633 6.28444 6.64202 7.00272 7.61099 8.62034 8.83241 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.025587 B = 0.009691 C = 0.007477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.038666 B = 2888.622109 C = 3743.958592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.087 4.087 3 C -0.099 4.099 4 C 0.157 3.843 5 H 0.048 0.952 6 C -0.102 4.102 7 H 0.054 0.946 8 C -0.136 4.136 9 C -0.105 4.105 10 C -0.127 4.127 11 C 0.115 3.885 12 N -0.641 5.641 13 C 0.537 3.463 14 O -0.577 6.577 15 C -0.573 4.573 16 H 0.080 0.920 17 C 0.037 3.963 18 N -0.815 5.815 19 Si 0.981 3.019 20 H -0.252 1.252 21 H -0.272 1.272 22 H -0.273 1.273 23 H 0.056 0.944 24 H 0.028 0.972 25 H 0.039 0.961 26 H 0.044 0.956 27 H 0.040 0.960 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.044 0.956 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.493 0.098 8.514 12.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.124 4.124 3 C -0.136 4.136 4 C 0.053 3.947 5 H 0.066 0.934 6 C -0.122 4.122 7 H 0.073 0.927 8 C -0.194 4.194 9 C -0.142 4.142 10 C -0.166 4.166 11 C -0.008 4.008 12 N -0.377 5.377 13 C 0.342 3.658 14 O -0.462 6.462 15 C -0.609 4.609 16 H 0.098 0.902 17 C -0.178 4.178 18 N -0.445 5.445 19 Si 0.802 3.198 20 H -0.175 1.175 21 H -0.198 1.198 22 H -0.198 1.198 23 H 0.075 0.925 24 H 0.047 0.953 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.063 0.937 36 H 0.110 0.890 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.677 0.142 8.634 11.554 hybrid contribution -0.191 -0.224 -1.117 1.155 sum 7.486 -0.082 7.517 10.609 Atomic orbital electron populations 1.21496 0.96964 0.99829 1.00079 1.21455 0.95282 0.96974 0.98673 1.21894 0.94366 0.97952 0.99429 1.21088 0.95052 0.95639 0.82944 0.93387 1.21571 0.96450 0.98906 0.95243 0.92734 1.21738 1.01635 1.01356 0.94641 1.21528 0.94684 1.01562 0.96420 1.21891 1.01085 0.98281 0.95327 1.21561 0.81446 0.98550 0.99252 1.48027 1.06562 1.71252 1.11897 1.18337 0.84550 0.77462 0.85440 1.90579 1.19330 1.55988 1.80324 1.21536 0.94588 1.49148 0.95673 0.90190 1.26697 0.94197 0.92833 1.04106 1.70155 1.01573 1.36658 1.36120 0.85213 0.79746 0.78067 0.76777 1.17487 1.19758 1.19843 0.92457 0.95269 0.94210 0.93740 0.94131 0.93467 0.91816 0.93032 0.91260 0.91942 0.91323 0.90411 0.93724 0.89029 0.90798 0.92771 0.92138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.30 9.78 71.98 0.70 -4.60 16 2 C -0.09 -3.80 4.08 30.59 0.12 -3.67 16 3 C -0.10 -4.20 4.05 30.60 0.12 -4.07 16 4 C 0.16 6.03 2.66 44.98 0.12 6.15 16 5 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 6 C -0.10 -3.14 1.93 -10.72 -0.02 -3.16 16 7 H 0.05 1.92 6.15 -2.39 -0.01 1.91 16 8 C -0.14 -3.30 8.97 71.98 0.65 -2.65 16 9 C -0.10 -2.69 5.16 30.63 0.16 -2.54 16 10 C -0.13 -3.70 6.09 30.68 0.19 -3.52 16 11 C 0.12 4.22 6.31 86.36 0.54 4.76 16 12 N -0.64 -28.62 2.93 -800.04 -2.35 -30.97 16 13 C 0.54 29.77 6.54 86.36 0.57 30.33 16 14 O -0.58 -34.54 7.81 -4.32 -0.03 -34.58 16 15 C -0.57 -31.89 8.78 24.83 0.22 -31.68 16 16 H 0.08 4.12 5.80 -2.91 -0.02 4.10 16 17 C 0.04 2.02 5.50 85.30 0.47 2.49 16 18 N -0.81 -48.62 11.84 21.83 0.26 -48.36 16 19 Si 0.98 41.38 29.56 68.60 2.03 43.41 16 20 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 21 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 22 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 23 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.03 1.41 7.60 -2.39 -0.02 1.39 16 25 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 26 H 0.04 2.39 5.31 -2.39 -0.01 2.38 16 27 H 0.04 1.57 6.61 -2.39 -0.02 1.55 16 28 H 0.05 1.72 7.05 -2.39 -0.02 1.70 16 29 H 0.06 3.31 5.74 -20.14 -0.12 3.19 16 30 H 0.05 1.31 6.81 -2.39 -0.02 1.30 16 31 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 35 H 0.04 1.45 8.14 -2.39 -0.02 1.44 16 36 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 37 H 0.07 2.92 5.41 -2.39 -0.01 2.91 16 38 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.27 14.75 8.29 -92.71 -0.77 13.99 16 Total: -1.00 -66.57 289.51 4.66 -61.90 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.92 Total: 20.75 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 3.84 Total: -12.16 kcal Atomic # 7 Polarization: -77.24 SS G_CDS: -2.09 Total: -79.33 kcal Atomic # 8 Polarization: -34.54 SS G_CDS: -0.03 Total: -34.58 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -66.57 4.66 -61.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335717966.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.955 kcal (2) G-P(sol) polarization free energy of solvation -66.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds