Wall clock time and date at job start Sun Mar 29 2020 22:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47079 * 2 1 4 4 C 1.53003 * 109.46914 * 184.62864 * 3 2 1 5 5 C 1.50699 * 112.90864 * 44.51637 * 4 3 2 6 6 O 1.21294 * 120.00090 * 250.55132 * 5 4 3 7 7 N 1.34775 * 120.00157 * 70.55229 * 5 4 3 8 8 C 1.37095 * 120.00068 * 185.70651 * 7 5 4 9 9 H 1.07993 * 120.00254 * 4.58509 * 8 7 5 10 10 C 1.38955 * 119.99695 * 184.58832 * 8 7 5 11 11 N 1.31409 * 120.00118 * 6.06351 * 10 8 7 12 12 Si 1.86800 * 119.99690 * 186.06581 * 10 8 7 13 13 H 1.48498 * 109.47484 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47141 * 120.00277 * 12 10 8 15 15 H 1.48506 * 109.46920 * 239.99711 * 12 10 8 16 16 C 1.46508 * 119.99701 * 5.70853 * 7 5 4 17 17 C 1.52993 * 109.46929 * 95.49110 * 16 7 5 18 18 C 1.53780 * 113.61481 * 175.77073 * 4 3 2 19 19 C 1.53785 * 87.08122 * 89.11226 * 18 4 3 20 20 C 1.53783 * 113.61291 * 273.26836 * 4 3 2 21 21 H 1.08997 * 109.46955 * 175.02684 * 1 2 3 22 22 H 1.08998 * 109.46989 * 295.02907 * 1 2 3 23 23 H 1.09005 * 109.46716 * 55.02658 * 1 2 3 24 24 H 1.08997 * 109.47237 * 239.99409 * 2 1 3 25 25 H 1.09006 * 109.46875 * 119.99567 * 2 1 3 26 26 H 1.08993 * 109.47377 * 64.62822 * 3 2 1 27 27 H 1.09003 * 109.46938 * 304.62092 * 3 2 1 28 28 H 0.97001 * 120.00180 * 180.02562 * 11 10 8 29 29 H 1.08997 * 109.46555 * 215.48993 * 16 7 5 30 30 H 1.09001 * 109.47030 * 335.49171 * 16 7 5 31 31 H 1.09000 * 109.47215 * 185.26144 * 17 16 7 32 32 H 1.08997 * 109.47678 * 305.26668 * 17 16 7 33 33 H 1.09003 * 109.47465 * 65.26966 * 17 16 7 34 34 H 1.09000 * 113.61515 * 334.56576 * 18 4 3 35 35 H 1.09003 * 113.69124 * 203.67267 * 18 4 3 36 36 H 1.09003 * 113.61603 * 139.97897 * 19 18 4 37 37 H 1.09000 * 113.61532 * 270.88534 * 19 18 4 38 38 H 1.08993 * 113.61614 * 156.33397 * 20 4 3 39 39 H 1.09006 * 113.61410 * 25.43217 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5656 1.4440 -0.1164 5 6 4.0754 0.4813 -1.1577 6 8 4.6622 -0.5245 -0.8183 7 7 3.8794 0.7380 -2.4662 8 6 4.2380 -0.1913 -3.4082 9 1 4.6084 -1.1577 -3.0998 10 6 4.1248 0.1103 -4.7599 11 7 3.7886 1.3236 -5.1365 12 14 4.4506 -1.2089 -6.0417 13 1 4.8101 -2.4801 -5.3635 14 1 3.2302 -1.4133 -6.8628 15 1 5.5709 -0.7818 -6.9179 16 6 3.2833 2.0101 -2.8819 17 6 4.3930 3.0006 -3.2396 18 6 4.1734 2.8521 -0.2291 19 6 4.2373 2.8619 1.3074 20 6 4.2868 1.3265 1.2368 21 1 -0.3633 -1.0238 -0.0891 22 1 -0.3633 0.4348 0.9312 23 1 -0.3633 0.5891 -0.8421 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.7460 1.9318 0.9285 27 1 1.6106 1.9796 -0.8457 28 1 3.7092 1.5341 -6.0800 29 1 2.6480 1.8462 -3.7523 30 1 2.6844 2.4145 -2.0658 31 1 3.9544 3.9741 -3.4586 32 1 5.0821 3.0931 -2.4001 33 1 4.9333 2.6404 -4.1151 34 1 3.4878 3.5919 -0.6422 35 1 5.1530 2.8694 -0.7069 36 1 5.1484 3.3103 1.7037 37 1 3.3341 3.2484 1.7796 38 1 5.2972 0.9252 1.1596 39 1 3.6926 0.8346 2.0069 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344189333.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:39 Heat of formation + Delta-G solvation = -8.511518 kcal Electronic energy + Delta-G solvation = -18816.205729 eV Core-core repulsion = 16146.041295 eV Total energy + Delta-G solvation = -2670.164434 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.06844 -36.90119 -34.98460 -33.77579 -31.55642 -29.37060 -27.99491 -25.35478 -24.99608 -23.68223 -22.03853 -20.93310 -19.84013 -17.80211 -16.71169 -15.97987 -15.08636 -14.84873 -14.53036 -14.01225 -13.65762 -13.14310 -12.89629 -12.68236 -12.60473 -12.08222 -11.99616 -11.38985 -11.31752 -11.20245 -11.06286 -10.93266 -10.82439 -10.60077 -10.50483 -10.25635 -10.13965 -9.91339 -9.85217 -9.66731 -9.54030 -8.73356 -8.11969 -7.62596 -6.10267 -3.73085 3.17232 3.27801 3.34899 3.99686 4.16813 4.83569 5.02406 5.09362 5.19704 5.22560 5.32706 5.51093 5.56853 5.64997 5.91767 5.97135 6.04995 6.10089 6.16658 6.22728 6.26705 6.31371 6.38403 6.41262 6.52834 6.67669 6.78915 6.80347 6.83359 6.89403 6.92030 7.04378 7.48874 7.70871 7.90425 8.19190 8.64763 9.28389 9.58370 10.12498 10.75694 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.024871 B = 0.009202 C = 0.008292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.541362 B = 3042.200594 C = 3376.083453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C -0.088 4.088 4 C -0.091 4.091 5 C 0.463 3.537 6 O -0.598 6.598 7 N -0.443 5.443 8 C -0.287 4.287 9 H 0.101 0.899 10 C 0.019 3.981 11 N -0.881 5.881 12 Si 0.927 3.073 13 H -0.271 1.271 14 H -0.282 1.282 15 H -0.283 1.283 16 C 0.113 3.887 17 C -0.148 4.148 18 C -0.124 4.124 19 C -0.146 4.146 20 C -0.109 4.109 21 H 0.050 0.950 22 H 0.047 0.953 23 H 0.053 0.947 24 H 0.072 0.928 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.261 0.739 29 H 0.116 0.884 30 H 0.035 0.965 31 H 0.029 0.971 32 H 0.024 0.976 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.337 4.698 6.939 9.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.126 4.126 4 C -0.095 4.095 5 C 0.251 3.749 6 O -0.483 6.483 7 N -0.161 5.161 8 C -0.415 4.415 9 H 0.118 0.882 10 C -0.181 4.181 11 N -0.524 5.524 12 Si 0.754 3.246 13 H -0.195 1.195 14 H -0.208 1.208 15 H -0.209 1.209 16 C -0.010 4.010 17 C -0.206 4.206 18 C -0.161 4.161 19 C -0.184 4.184 20 C -0.147 4.147 21 H 0.069 0.931 22 H 0.066 0.934 23 H 0.072 0.928 24 H 0.091 0.909 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.133 0.867 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.043 0.957 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.082 4.279 6.874 9.068 hybrid contribution 0.165 -0.393 -0.805 0.911 sum -3.916 3.887 6.069 8.202 Atomic orbital electron populations 1.21752 0.96416 1.01234 1.01059 1.21509 0.94883 0.96844 1.02979 1.21420 0.92279 0.97308 1.01551 1.21903 0.95663 0.95845 0.96072 1.19644 0.84466 0.87757 0.83035 1.90487 1.46703 1.30226 1.80928 1.43803 1.52614 1.15611 1.04078 1.19868 1.39601 0.96332 0.85737 0.88154 1.25220 0.97852 0.97054 0.97960 1.70111 1.48726 1.17601 1.15973 0.85834 0.77782 0.80733 0.80220 1.19497 1.20848 1.20931 1.21918 0.96350 0.83316 0.99395 1.22369 0.99335 0.96838 1.02015 1.23184 1.01594 0.95875 0.95493 1.22898 1.01217 0.97126 0.97134 1.22733 1.01214 0.95105 0.95645 0.93120 0.93399 0.92832 0.90949 0.92303 0.92095 0.91117 0.92762 0.86696 0.94694 0.95166 0.95711 0.89238 0.91239 0.89593 0.91950 0.90608 0.89744 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.91 37.16 0.37 -1.70 16 2 C -0.12 -2.15 5.59 -26.73 -0.15 -2.30 16 3 C -0.09 -1.46 4.38 -26.73 -0.12 -1.58 16 4 C -0.09 -1.73 0.39 -154.85 -0.06 -1.79 16 5 C 0.46 11.31 4.83 -10.99 -0.05 11.26 16 6 O -0.60 -16.81 15.88 5.55 0.09 -16.72 16 7 N -0.44 -11.27 2.63 -114.81 -0.30 -11.57 16 8 C -0.29 -7.96 9.53 -14.93 -0.14 -8.11 16 9 H 0.10 2.96 7.20 -52.49 -0.38 2.59 16 10 C 0.02 0.48 5.36 -17.47 -0.09 0.39 16 11 N -0.88 -22.41 7.26 55.50 0.40 -22.01 16 12 Si 0.93 20.86 29.56 -169.99 -5.02 15.84 16 13 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 14 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 16 C 0.11 2.56 4.83 -4.04 -0.02 2.54 16 17 C -0.15 -3.19 9.05 37.15 0.34 -2.86 16 18 C -0.12 -2.09 4.58 -25.92 -0.12 -2.21 16 19 C -0.15 -2.09 7.73 -25.91 -0.20 -2.29 16 20 C -0.11 -1.87 6.83 -25.92 -0.18 -2.05 16 21 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.07 1.53 6.87 -51.93 -0.36 1.17 16 25 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.06 0.86 7.38 -51.93 -0.38 0.48 16 27 H 0.07 1.18 6.10 -51.93 -0.32 0.86 16 28 H 0.26 6.36 8.31 -40.82 -0.34 6.02 16 29 H 0.12 2.85 5.72 -51.93 -0.30 2.55 16 30 H 0.04 0.70 3.26 -51.93 -0.17 0.53 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.02 0.51 5.28 -51.93 -0.27 0.23 16 33 H 0.09 2.20 6.02 -51.93 -0.31 1.89 16 34 H 0.07 1.09 7.23 -51.93 -0.38 0.71 16 35 H 0.09 1.59 6.20 -51.93 -0.32 1.27 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.95 7.70 -51.93 -0.40 0.55 16 38 H 0.08 1.60 7.81 -51.93 -0.41 1.20 16 39 H 0.06 0.99 8.10 -51.93 -0.42 0.57 16 LS Contribution 291.69 15.07 4.40 4.40 Total: -1.00 -28.92 291.69 -6.95 -35.87 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -6.08 Total: 4.89 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: -0.43 Total: -10.69 kcal Atomic # 7 Polarization: -33.68 SS G_CDS: 0.10 Total: -33.58 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: 0.09 Total: -16.72 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.92 -6.95 -35.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344189333.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.358 kcal (2) G-P(sol) polarization free energy of solvation -28.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds