Wall clock time and date at job start Sun Mar 29 2020 23:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.53000 * 109.47166 * 64.99895 * 3 2 1 6 6 C 1.52996 * 109.46950 * 180.02562 * 5 3 2 7 7 C 1.53008 * 109.47194 * 299.99754 * 6 5 3 8 8 C 1.53003 * 109.46799 * 59.99931 * 7 6 5 9 9 C 1.52996 * 109.47304 * 300.00002 * 8 7 6 10 10 H 1.08996 * 109.47312 * 300.00532 * 9 8 7 11 11 C 1.50700 * 109.46911 * 179.97438 * 9 8 7 12 12 O 1.21283 * 120.00241 * 240.00163 * 11 9 8 13 13 N 1.34775 * 119.99782 * 60.00475 * 11 9 8 14 14 C 1.46506 * 119.99752 * 179.97438 * 13 11 9 15 15 C 1.50695 * 109.46876 * 179.97438 * 14 13 11 16 16 H 1.07998 * 120.00141 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00001 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00009 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00099 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47441 * 90.00715 * 19 17 15 21 21 H 1.48505 * 109.47086 * 210.00223 * 19 17 15 22 22 H 1.48500 * 109.47223 * 330.00335 * 19 17 15 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 27 27 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 28 28 H 1.08998 * 109.46865 * 300.00077 * 5 3 2 29 29 H 1.08997 * 109.47108 * 60.00222 * 5 3 2 30 30 H 1.08993 * 109.47243 * 180.02562 * 6 5 3 31 31 H 1.08996 * 109.47312 * 59.99462 * 6 5 3 32 32 H 1.09000 * 109.46508 * 300.00505 * 7 6 5 33 33 H 1.08992 * 109.47388 * 180.02562 * 7 6 5 34 34 H 1.08998 * 109.46693 * 180.02562 * 8 7 6 35 35 H 1.08997 * 109.46927 * 60.00202 * 8 7 6 36 36 H 0.96991 * 120.00101 * 359.97438 * 13 11 9 37 37 H 1.09002 * 109.47182 * 299.99945 * 14 13 11 38 38 H 1.08997 * 109.47005 * 59.99774 * 14 13 11 39 39 H 0.96996 * 120.00506 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6352 2.1266 1.3073 6 6 2.1447 3.5693 1.3070 7 6 3.6696 3.5717 1.1810 8 6 4.0743 2.8875 -0.1263 9 6 3.5648 1.4448 -0.1260 10 1 3.9997 0.9061 0.7159 11 6 3.9630 0.7713 -1.4139 12 8 3.1111 0.3325 -2.1574 13 7 5.2658 0.6564 -1.7395 14 6 5.6529 0.0011 -2.9914 15 6 7.1546 0.0040 -3.1164 16 1 7.7602 0.4491 -2.3408 17 6 7.7556 -0.5624 -4.2204 18 7 7.0183 -1.1048 -5.1647 19 14 9.6172 -0.5594 -4.3751 20 1 10.1676 -1.7904 -3.7532 21 1 9.9946 -0.5190 -5.8108 22 1 10.1693 0.6336 -3.6843 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 0.5489 2.1253 1.3968 29 1 2.0698 1.5876 2.1491 30 1 1.8567 4.0565 2.2385 31 1 1.7098 4.1080 0.4652 32 1 4.1044 3.0328 2.0229 33 1 4.0326 4.5993 1.1813 34 1 5.1606 2.8888 -0.2158 35 1 3.6393 3.4263 -0.9681 36 1 5.9470 1.0076 -1.1451 37 1 5.2900 -1.0268 -2.9908 38 1 5.2175 0.5396 -3.8331 39 1 7.4410 -1.5030 -5.9416 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357103460.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:59:23 Heat of formation + Delta-G solvation = -81.898613 kcal Electronic energy + Delta-G solvation = -17634.943440 eV Core-core repulsion = 14961.596703 eV Total energy + Delta-G solvation = -2673.346738 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.91570 -37.38127 -34.39672 -33.54807 -32.31226 -30.94850 -28.91432 -27.15383 -23.87526 -23.50008 -22.08181 -20.52528 -19.94099 -19.31366 -17.16335 -15.77370 -15.31677 -14.85513 -14.67327 -14.51374 -14.14851 -13.86768 -13.46650 -13.12739 -13.00039 -12.42006 -12.30756 -11.88486 -11.71860 -11.44464 -11.41424 -11.04773 -11.00240 -10.91540 -10.85591 -10.63763 -10.36708 -10.27710 -10.09334 -9.86074 -9.37421 -8.73320 -8.67148 -7.81581 -6.15473 -4.22231 3.24649 3.30794 3.33210 3.43185 4.13408 4.38679 4.71133 4.77917 4.89827 5.15176 5.20537 5.27195 5.41865 5.44673 5.50776 5.55147 5.56104 5.67108 5.78084 5.82293 5.92061 6.06483 6.10565 6.13351 6.17015 6.22712 6.31363 6.38909 6.42280 6.67970 6.83291 7.34105 7.50734 7.54480 7.69378 7.99258 8.68042 8.81005 9.17013 9.44806 10.94774 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.034293 B = 0.005390 C = 0.004797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.306701 B = 5193.934064 C = 5836.015945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C -0.062 4.062 4 H 0.074 0.926 5 C -0.115 4.115 6 C -0.121 4.121 7 C -0.117 4.117 8 C -0.111 4.111 9 C -0.104 4.104 10 H 0.089 0.911 11 C 0.501 3.499 12 O -0.552 6.552 13 N -0.713 5.713 14 C 0.249 3.751 15 C -0.542 4.542 16 H 0.062 0.938 17 C 0.064 3.936 18 N -0.886 5.886 19 Si 0.903 3.097 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.273 1.273 23 H 0.048 0.952 24 H 0.052 0.948 25 H 0.047 0.953 26 H 0.049 0.951 27 H 0.096 0.904 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.389 0.611 37 H 0.026 0.974 38 H 0.026 0.974 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.987 7.534 13.689 17.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.172 4.172 3 C -0.081 4.081 4 H 0.092 0.908 5 C -0.153 4.153 6 C -0.158 4.158 7 C -0.154 4.154 8 C -0.149 4.149 9 C -0.125 4.125 10 H 0.107 0.893 11 C 0.287 3.713 12 O -0.431 6.431 13 N -0.360 5.360 14 C 0.129 3.871 15 C -0.581 4.581 16 H 0.080 0.920 17 C -0.140 4.140 18 N -0.523 5.523 19 Si 0.730 3.270 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 H 0.067 0.933 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.114 0.886 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.222 0.778 37 H 0.044 0.956 38 H 0.044 0.956 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.560 7.107 12.937 17.063 hybrid contribution 1.424 0.081 0.094 1.430 sum -7.135 7.188 13.032 16.505 Atomic orbital electron populations 1.21752 0.96546 1.00959 1.01089 1.21843 0.95428 0.96463 1.03420 1.20896 0.92912 0.96771 0.97502 0.90758 1.21666 1.00569 0.95374 0.97678 1.21559 0.95836 0.97041 1.01387 1.21527 0.95955 1.00324 0.97603 1.21516 1.00969 0.94151 0.98215 1.21387 0.97505 0.96753 0.96890 0.89332 1.20475 0.83295 0.80078 0.87499 1.90578 1.49922 1.50000 1.52628 1.46493 1.06029 1.58569 1.24957 1.19080 0.94926 0.92895 0.80245 1.21235 0.91024 1.39516 1.06303 0.91972 1.24950 0.98849 0.94850 0.95359 1.69974 1.35533 1.37363 1.09474 0.86427 0.84642 0.78502 0.77412 1.20472 1.21009 1.19756 0.93331 0.92899 0.93389 0.93214 0.88622 0.91773 0.92183 0.92356 0.92031 0.91954 0.91986 0.91321 0.91480 0.77836 0.95649 0.95637 0.92477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.67 37.16 0.36 -1.46 16 2 C -0.13 -1.95 5.14 -26.73 -0.14 -2.09 16 3 C -0.06 -0.85 1.36 -90.61 -0.12 -0.97 16 4 H 0.07 1.14 8.10 -51.93 -0.42 0.72 16 5 C -0.12 -1.24 4.96 -26.73 -0.13 -1.37 16 6 C -0.12 -1.18 5.92 -26.73 -0.16 -1.34 16 7 C -0.12 -1.18 5.92 -26.73 -0.16 -1.33 16 8 C -0.11 -1.40 5.10 -26.73 -0.14 -1.53 16 9 C -0.10 -1.51 2.06 -91.77 -0.19 -1.70 16 10 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 11 C 0.50 9.98 6.83 -10.99 -0.08 9.90 16 12 O -0.55 -12.98 13.67 5.55 0.08 -12.91 16 13 N -0.71 -15.12 5.44 -61.47 -0.33 -15.45 16 14 C 0.25 6.66 5.43 -5.19 -0.03 6.63 16 15 C -0.54 -14.82 9.28 -34.44 -0.32 -15.13 16 16 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 17 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 18 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 19 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.51 6.57 -51.93 -0.34 0.17 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.10 1.75 5.41 -51.93 -0.28 1.47 16 28 H 0.06 0.64 6.56 -51.93 -0.34 0.30 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.85 7.56 -51.93 -0.39 0.46 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.39 7.17 7.74 -40.82 -0.32 6.85 16 37 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 305.93 15.07 4.61 4.61 Total: -1.00 -30.61 305.93 -7.83 -38.44 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -6.70 Total: 3.66 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -1.20 Total: -8.73 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: 0.40 Total: -40.99 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.08 Total: -12.91 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.61 -7.83 -38.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357103460.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.458 kcal (2) G-P(sol) polarization free energy of solvation -30.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds