Wall clock time and date at job start Sun Mar 29 2020 22:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.53001 * 109.47492 * 179.97438 * 3 2 1 5 5 H 1.09004 * 115.55848 * 29.30639 * 4 3 2 6 6 C 1.53005 * 117.49972 * 243.62485 * 4 3 2 7 7 C 1.52993 * 117.50238 * 175.00241 * 4 3 2 8 8 H 1.08996 * 117.49992 * 215.00433 * 7 4 3 9 9 C 1.50703 * 117.49943 * 359.97438 * 7 4 3 10 10 O 1.21279 * 119.99620 * 0.02562 * 9 7 4 11 11 N 1.34771 * 120.00343 * 179.97438 * 9 7 4 12 12 C 1.46505 * 119.99877 * 0.02562 * 11 9 7 13 13 C 1.53000 * 109.46748 * 269.99734 * 12 11 9 14 14 C 1.46499 * 120.00531 * 179.97438 * 11 9 7 15 15 C 1.50701 * 109.47260 * 270.00758 * 14 11 9 16 16 H 1.08002 * 119.99761 * 359.97438 * 15 14 11 17 17 C 1.37871 * 119.99694 * 180.27562 * 15 14 11 18 18 N 1.31523 * 119.99908 * 179.72112 * 17 15 14 19 19 Si 1.86800 * 120.00405 * 359.71709 * 17 15 14 20 20 H 1.48500 * 109.47210 * 90.00069 * 19 17 15 21 21 H 1.48504 * 109.47424 * 210.00300 * 19 17 15 22 22 H 1.48502 * 109.46888 * 330.00390 * 19 17 15 23 23 H 1.09001 * 109.47025 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47283 * 300.00017 * 1 2 3 25 25 H 1.09003 * 109.46678 * 60.00466 * 1 2 3 26 26 H 1.08995 * 109.47734 * 240.00268 * 2 1 3 27 27 H 1.09001 * 109.47380 * 119.99762 * 2 1 3 28 28 H 1.09004 * 109.47147 * 59.99803 * 3 2 1 29 29 H 1.09001 * 109.47273 * 299.99801 * 3 2 1 30 30 H 1.08994 * 117.49844 * 145.01699 * 6 4 3 31 31 H 1.08996 * 117.49627 * 0.02562 * 6 4 3 32 32 H 1.08997 * 109.47067 * 29.99430 * 12 11 9 33 33 H 1.08998 * 109.47093 * 149.99718 * 12 11 9 34 34 H 1.09002 * 109.47059 * 179.97438 * 13 12 11 35 35 H 1.08997 * 109.47089 * 299.99683 * 13 12 11 36 36 H 1.08998 * 109.47336 * 60.00133 * 13 12 11 37 37 H 1.09000 * 109.47197 * 149.99763 * 14 11 9 38 38 H 1.09007 * 109.46342 * 30.00336 * 14 11 9 39 39 H 0.96995 * 120.00181 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 4.0405 0.5851 -0.4804 6 6 4.2759 2.0458 1.2168 7 6 4.2764 2.7945 -0.1175 8 1 5.2115 2.8266 -0.6766 9 6 3.4120 4.0242 -0.2262 10 8 2.2038 3.9188 -0.2174 11 7 3.9815 5.2411 -0.3320 12 6 5.4410 5.3685 -0.3420 13 6 5.9478 5.5384 1.0916 14 6 3.1412 6.4365 -0.4382 15 6 2.8552 6.7221 -1.8900 16 1 3.2593 6.0779 -2.6569 17 6 2.0828 7.8094 -2.2395 18 7 1.8377 8.0618 -3.5067 19 14 1.3843 8.9239 -0.9131 20 1 2.3490 10.0156 -0.6252 21 1 0.1017 9.5075 -1.3817 22 1 1.1470 8.1347 0.3222 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8934 -0.5137 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6767 1.9564 -0.8900 30 1 5.2108 1.5851 1.5357 31 1 3.6503 2.4421 2.0165 32 1 5.8809 4.4721 -0.7790 33 1 5.7257 6.2385 -0.9336 34 1 7.0337 5.6327 1.0843 35 1 5.5079 6.4348 1.5286 36 1 5.6631 4.6684 1.6832 37 1 3.6610 7.2865 0.0039 38 1 2.2030 6.2691 0.0909 39 1 1.2941 8.8265 -3.7526 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360329934.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:53 Heat of formation + Delta-G solvation = -45.965355 kcal Electronic energy + Delta-G solvation = -17648.361117 eV Core-core repulsion = 14976.572563 eV Total energy + Delta-G solvation = -2671.788555 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.14736 -38.19534 -36.75651 -34.96737 -34.60982 -31.85651 -29.84799 -28.21383 -25.75487 -24.30238 -23.27815 -22.53494 -21.55812 -19.43593 -19.11244 -18.15024 -17.06269 -16.37642 -16.19387 -15.68022 -15.49233 -14.91502 -14.63558 -14.43139 -14.09077 -13.84908 -13.76016 -13.41070 -13.23648 -13.17781 -12.97474 -12.58728 -12.35149 -12.18369 -12.04260 -11.90019 -11.87242 -11.77356 -11.63380 -11.00331 -10.85122 -10.79831 -10.29825 -9.37199 -8.36528 -6.41415 1.28486 1.33209 1.44170 1.72990 2.28535 2.33148 2.93413 2.97313 3.58899 3.75177 4.00471 4.09655 4.21200 4.24945 4.36653 4.43335 4.46127 4.59217 4.67375 4.76584 4.83932 4.92080 4.95264 5.00241 5.00487 5.04744 5.07027 5.11809 5.20209 5.38783 5.39313 5.45860 5.46184 5.66064 5.71078 6.23164 6.59511 6.76569 7.19956 7.49648 8.80688 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.021031 B = 0.007221 C = 0.005894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.035983 B = 3876.506722 C = 4749.377203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.116 4.116 3 C -0.078 4.078 4 C -0.121 4.121 5 H 0.138 0.862 6 C -0.124 4.124 7 C -0.201 4.201 8 H 0.143 0.857 9 C 0.522 3.478 10 O -0.586 6.586 11 N -0.600 5.600 12 C 0.100 3.900 13 C -0.157 4.157 14 C 0.227 3.773 15 C -0.535 4.535 16 H 0.026 0.974 17 C 0.011 3.989 18 N -0.945 5.945 19 Si 0.948 3.052 20 H -0.250 1.250 21 H -0.280 1.280 22 H -0.258 1.258 23 H 0.071 0.929 24 H 0.046 0.954 25 H 0.037 0.963 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.042 0.958 29 H 0.037 0.963 30 H 0.141 0.859 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.043 0.957 36 H 0.062 0.938 37 H 0.044 0.956 38 H 0.017 0.983 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.628 -13.173 11.849 19.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.115 4.115 4 C -0.139 4.139 5 H 0.156 0.844 6 C -0.161 4.161 7 C -0.221 4.221 8 H 0.161 0.839 9 C 0.312 3.688 10 O -0.467 6.467 11 N -0.331 5.331 12 C -0.022 4.022 13 C -0.215 4.215 14 C 0.104 3.896 15 C -0.574 4.574 16 H 0.044 0.956 17 C -0.187 4.187 18 N -0.586 5.586 19 Si 0.771 3.229 20 H -0.174 1.174 21 H -0.206 1.206 22 H -0.183 1.183 23 H 0.090 0.910 24 H 0.065 0.935 25 H 0.056 0.944 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.159 0.841 31 H 0.101 0.899 32 H 0.113 0.887 33 H 0.086 0.914 34 H 0.112 0.888 35 H 0.062 0.938 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.035 0.965 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.935 -13.069 11.735 19.274 hybrid contribution -0.763 1.153 -0.386 1.435 sum 7.172 -11.917 11.349 17.951 Atomic orbital electron populations 1.21774 0.96411 1.01916 1.00989 1.21543 0.95560 0.95560 1.02658 1.21104 0.93094 0.96345 1.00995 1.22554 0.94854 0.94344 1.02183 0.84417 1.23129 1.03666 1.00168 0.89123 1.22341 1.02173 0.90924 1.06695 0.83947 1.20453 0.88029 0.84842 0.75525 1.90632 1.16972 1.86517 1.52558 1.48035 1.07997 1.06226 1.70813 1.21745 0.78285 1.03339 0.98854 1.22121 1.02317 1.01917 0.95158 1.19241 0.91031 0.84422 0.94859 1.21559 1.32322 1.11199 0.92299 0.95556 1.25862 0.95793 0.99163 0.97911 1.70055 1.40102 1.29994 1.18413 0.85703 0.78718 0.79167 0.79329 1.17383 1.20553 1.18256 0.90981 0.93522 0.94380 0.91329 0.90469 0.93875 0.94447 0.84124 0.89879 0.88749 0.91449 0.88832 0.93786 0.91878 0.93848 0.96519 0.92241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.91 71.98 0.71 -2.94 16 2 C -0.12 -2.68 5.89 30.59 0.18 -2.50 16 3 C -0.08 -2.43 3.76 30.59 0.11 -2.31 16 4 C -0.12 -3.04 5.74 -10.79 -0.06 -3.10 16 5 H 0.14 2.60 8.08 -2.38 -0.02 2.58 16 6 C -0.12 -2.65 9.88 30.59 0.30 -2.34 16 7 C -0.20 -5.74 5.29 -11.54 -0.06 -5.80 16 8 H 0.14 3.33 6.44 -2.39 -0.02 3.31 16 9 C 0.52 21.91 7.44 87.66 0.65 22.56 16 10 O -0.59 -29.92 12.68 -3.03 -0.04 -29.96 16 11 N -0.60 -25.38 2.46 -826.15 -2.03 -27.41 16 12 C 0.10 3.07 5.96 86.38 0.51 3.59 16 13 C -0.16 -3.64 10.24 71.98 0.74 -2.91 16 14 C 0.23 11.53 4.23 85.63 0.36 11.89 16 15 C -0.54 -32.58 9.94 25.60 0.25 -32.33 16 16 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 17 C 0.01 0.64 5.47 84.65 0.46 1.10 16 18 N -0.95 -61.04 13.96 21.45 0.30 -60.74 16 19 Si 0.95 45.65 27.46 68.60 1.88 47.54 16 20 H -0.25 -10.96 7.11 99.48 0.71 -10.25 16 21 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 22 H -0.26 -12.11 6.55 99.48 0.65 -11.46 16 23 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.05 1.14 8.14 -2.39 -0.02 1.13 16 25 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.04 1.52 7.30 -2.38 -0.02 1.50 16 29 H 0.04 1.49 6.92 -2.39 -0.02 1.47 16 30 H 0.14 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.08 2.04 8.03 -2.39 -0.02 2.02 16 32 H 0.09 2.37 6.00 -2.39 -0.01 2.36 16 33 H 0.07 2.24 8.07 -2.39 -0.02 2.22 16 34 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.04 1.13 8.14 -2.39 -0.02 1.12 16 36 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.04 2.02 7.49 -2.39 -0.02 2.00 16 38 H 0.02 0.92 6.49 -2.38 -0.02 0.91 16 39 H 0.27 16.07 8.31 -92.71 -0.77 15.29 16 Total: -1.00 -77.50 315.51 5.23 -72.27 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 0.94 Total: 13.38 kcal Atomic # 6 Polarization: -19.26 SS G_CDS: 4.17 Total: -15.09 kcal Atomic # 7 Polarization: -86.42 SS G_CDS: -1.73 Total: -88.15 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -0.04 Total: -29.96 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.88 Total: 47.54 kcal Total: -77.50 5.23 -72.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360329934.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.306 kcal (2) G-P(sol) polarization free energy of solvation -77.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds