Wall clock time and date at job start Sun Mar 29 2020 22:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47127 * 179.97438 * 3 2 1 5 5 H 1.09007 * 115.55278 * 330.57935 * 4 3 2 6 6 C 1.53002 * 117.50037 * 116.24950 * 4 3 2 7 7 C 1.52999 * 117.50142 * 184.91187 * 4 3 2 8 8 H 1.08997 * 117.50303 * 145.02010 * 7 4 3 9 9 C 1.50702 * 117.49571 * 359.97438 * 7 4 3 10 10 O 1.21287 * 120.00046 * 0.02562 * 9 7 4 11 11 N 1.34779 * 120.00251 * 180.02562 * 9 7 4 12 12 C 1.46501 * 119.99616 * 359.97438 * 11 9 7 13 13 C 1.52992 * 109.47308 * 90.00451 * 12 11 9 14 14 C 1.46494 * 120.00212 * 179.97438 * 11 9 7 15 15 C 1.50700 * 109.46957 * 89.99710 * 14 11 9 16 16 H 1.07994 * 120.00339 * 0.02562 * 15 14 11 17 17 C 1.37881 * 119.99934 * 180.02562 * 15 14 11 18 18 N 1.31513 * 119.99912 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99866 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.46874 * 90.00561 * 19 17 15 21 21 H 1.48501 * 109.47038 * 210.00180 * 19 17 15 22 22 H 1.48489 * 109.47191 * 330.00421 * 19 17 15 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 27 27 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 28 28 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 29 29 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 30 30 H 1.09001 * 117.49887 * 214.97660 * 6 4 3 31 31 H 1.08998 * 117.50046 * 359.97438 * 6 4 3 32 32 H 1.08997 * 109.46621 * 210.00400 * 12 11 9 33 33 H 1.08999 * 109.47178 * 330.00004 * 12 11 9 34 34 H 1.09010 * 109.47249 * 299.99870 * 13 12 11 35 35 H 1.08999 * 109.47366 * 59.99668 * 13 12 11 36 36 H 1.08999 * 109.47423 * 180.02562 * 13 12 11 37 37 H 1.09003 * 109.47065 * 209.99614 * 14 11 9 38 38 H 1.09005 * 109.47419 * 329.99998 * 14 11 9 39 39 H 0.97006 * 119.99640 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 4.0400 0.5860 0.4841 6 6 4.2770 2.0426 -1.2163 7 6 4.2764 2.7947 0.1169 8 1 5.2112 2.8277 0.6765 9 6 3.4119 4.0247 0.2215 10 8 2.2037 3.9193 0.2120 11 7 3.9814 5.2418 0.3256 12 6 5.4408 5.3690 0.3377 13 6 5.9501 5.5358 -1.0953 14 6 3.1410 6.4375 0.4267 15 6 2.8516 6.7269 1.8770 16 1 3.2538 6.0847 2.6465 17 6 2.0733 7.8116 2.2216 18 7 1.8211 8.0645 3.4873 19 14 1.3782 8.9228 0.8906 20 1 0.0474 8.4168 0.4684 21 1 1.2375 10.3026 1.4214 22 1 2.2970 8.9325 -0.2759 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 5.2122 1.5811 -1.5333 31 1 3.6521 2.4370 -2.0176 32 1 5.7246 6.2403 0.9279 33 1 5.8799 4.4736 0.7775 34 1 5.6662 4.6644 -1.6856 35 1 5.5110 6.4312 -1.5351 36 1 7.0360 5.6300 -1.0864 37 1 3.6620 7.2863 -0.0163 38 1 2.2040 6.2690 -0.1042 39 1 1.2732 8.8274 3.7297 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360329936.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:00 Heat of formation + Delta-G solvation = -25.736377 kcal Electronic energy + Delta-G solvation = -17647.419733 eV Core-core repulsion = 14976.508373 eV Total energy + Delta-G solvation = -2670.911360 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.68099 -36.87009 -35.16075 -33.69573 -32.62933 -30.28485 -28.11708 -26.99572 -24.10484 -22.94244 -21.93306 -21.24795 -20.37844 -17.92562 -16.93045 -16.68717 -15.40814 -15.12303 -14.52483 -14.32783 -14.08803 -13.39044 -13.27102 -12.97426 -12.61320 -12.45288 -12.31909 -12.01295 -11.89511 -11.75977 -11.43211 -11.10235 -10.93836 -10.85481 -10.69865 -10.58104 -10.47416 -10.15375 -9.86724 -9.63978 -9.50578 -8.71535 -8.56858 -7.65276 -6.06733 -4.04995 3.18972 3.30153 3.36144 3.37926 3.83724 4.13218 4.41226 4.72814 4.95349 5.08606 5.24616 5.25746 5.29482 5.34278 5.39784 5.52875 5.62453 5.67073 5.70358 5.84726 6.00022 6.03914 6.05580 6.11245 6.13988 6.19617 6.22656 6.39299 6.46722 6.60181 6.75535 6.89579 6.99062 7.42025 7.64030 8.33429 8.50123 8.96381 9.07713 9.54033 11.06770 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.021008 B = 0.007228 C = 0.005896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.496559 B = 3873.138377 C = 4747.715897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.081 4.081 4 C -0.118 4.118 5 H 0.105 0.895 6 C -0.155 4.155 7 C -0.186 4.186 8 H 0.118 0.882 9 C 0.536 3.464 10 O -0.536 6.536 11 N -0.590 5.590 12 C 0.108 3.892 13 C -0.168 4.168 14 C 0.217 3.783 15 C -0.527 4.527 16 H 0.074 0.926 17 C 0.072 3.928 18 N -0.898 5.898 19 Si 0.876 3.124 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.266 1.266 23 H 0.047 0.953 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.028 0.972 38 H 0.035 0.965 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.683 -11.947 -9.504 16.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.118 4.118 4 C -0.136 4.136 5 H 0.124 0.876 6 C -0.193 4.193 7 C -0.207 4.207 8 H 0.136 0.864 9 C 0.323 3.677 10 O -0.413 6.413 11 N -0.321 5.321 12 C -0.016 4.016 13 C -0.226 4.226 14 C 0.096 3.904 15 C -0.565 4.565 16 H 0.092 0.908 17 C -0.130 4.130 18 N -0.537 5.537 19 Si 0.703 3.297 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.191 1.191 23 H 0.066 0.934 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.046 0.954 38 H 0.053 0.947 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.937 -11.828 -9.382 16.223 hybrid contribution -0.162 0.799 -0.434 0.924 sum 5.775 -11.029 -9.815 15.853 Atomic orbital electron populations 1.21747 0.96138 1.00779 1.02193 1.21588 0.95750 0.97692 1.01066 1.21253 0.91204 0.94943 1.04416 1.22382 0.96189 0.94370 1.00706 0.87650 1.23015 1.02573 1.02770 0.90941 1.22400 1.01994 0.93000 1.03329 0.86435 1.19414 0.87856 0.83504 0.76885 1.90655 1.14482 1.85682 1.50510 1.47885 1.06187 1.07096 1.70923 1.21424 0.81104 1.02610 0.96463 1.22211 1.00445 1.02184 0.97801 1.19627 0.90658 0.81964 0.98142 1.21344 1.32177 1.12016 0.90974 0.90802 1.24860 0.95571 0.97307 0.95304 1.69902 1.38680 1.29036 1.16080 0.86853 0.80334 0.80143 0.82373 1.19943 1.21088 1.19107 0.93376 0.92843 0.92544 0.92567 0.92696 0.91356 0.89891 0.88504 0.88607 0.90043 0.91366 0.92743 0.92469 0.92191 0.95388 0.94678 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.91 37.16 0.37 -1.45 16 2 C -0.12 -1.52 5.89 -26.73 -0.16 -1.67 16 3 C -0.08 -1.25 3.75 -26.73 -0.10 -1.35 16 4 C -0.12 -1.61 5.73 -90.62 -0.52 -2.13 16 5 H 0.11 1.22 8.08 -51.92 -0.42 0.80 16 6 C -0.16 -1.94 9.88 -26.69 -0.26 -2.21 16 7 C -0.19 -2.84 5.29 -91.73 -0.49 -3.33 16 8 H 0.12 1.57 6.44 -51.93 -0.33 1.24 16 9 C 0.54 11.05 7.44 -10.98 -0.08 10.97 16 10 O -0.54 -12.93 12.68 5.55 0.07 -12.86 16 11 N -0.59 -12.34 2.46 -175.06 -0.43 -12.77 16 12 C 0.11 1.74 5.95 -4.05 -0.02 1.71 16 13 C -0.17 -2.21 10.24 37.15 0.38 -1.83 16 14 C 0.22 5.38 4.23 -5.20 -0.02 5.36 16 15 C -0.53 -15.33 9.94 -34.44 -0.34 -15.68 16 16 H 0.07 2.36 8.06 -52.49 -0.42 1.94 16 17 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 18 N -0.90 -28.00 13.96 55.43 0.77 -27.23 16 19 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 20 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.07 1.15 7.29 -51.93 -0.38 0.78 16 29 H 0.08 1.55 6.93 -51.93 -0.36 1.19 16 30 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.10 1.28 8.03 -51.93 -0.42 0.87 16 32 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 33 H 0.07 0.94 6.00 -51.93 -0.31 0.63 16 34 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 38 H 0.04 0.93 6.85 -51.93 -0.36 0.58 16 39 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 315.51 15.07 4.75 4.75 Total: -1.00 -32.82 315.51 -7.61 -40.43 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -6.76 Total: 0.07 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -1.35 Total: -9.58 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.34 Total: -40.00 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.07 Total: -12.86 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.82 -7.61 -40.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360329936.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.693 kcal (2) G-P(sol) polarization free energy of solvation -32.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds