Wall clock time and date at job start Sun Mar 29 2020 22:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47127 * 179.97438 * 3 2 1 5 5 H 1.09007 * 115.55278 * 330.57935 * 4 3 2 6 6 C 1.53002 * 117.50037 * 116.24950 * 4 3 2 7 7 C 1.52999 * 117.50142 * 184.91187 * 4 3 2 8 8 H 1.08997 * 117.50303 * 145.02010 * 7 4 3 9 9 C 1.50702 * 117.49571 * 359.97438 * 7 4 3 10 10 O 1.21287 * 120.00046 * 0.02562 * 9 7 4 11 11 N 1.34779 * 120.00251 * 180.02562 * 9 7 4 12 12 C 1.46501 * 119.99616 * 359.97438 * 11 9 7 13 13 C 1.52992 * 109.47308 * 90.00451 * 12 11 9 14 14 C 1.46494 * 120.00212 * 179.97438 * 11 9 7 15 15 C 1.50700 * 109.46957 * 89.99710 * 14 11 9 16 16 H 1.07994 * 120.00339 * 0.02562 * 15 14 11 17 17 C 1.37881 * 119.99934 * 180.02562 * 15 14 11 18 18 N 1.31513 * 119.99912 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99866 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.46874 * 90.00561 * 19 17 15 21 21 H 1.48501 * 109.47038 * 210.00180 * 19 17 15 22 22 H 1.48489 * 109.47191 * 330.00421 * 19 17 15 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 27 27 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 28 28 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 29 29 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 30 30 H 1.09001 * 117.49887 * 214.97660 * 6 4 3 31 31 H 1.08998 * 117.50046 * 359.97438 * 6 4 3 32 32 H 1.08997 * 109.46621 * 210.00400 * 12 11 9 33 33 H 1.08999 * 109.47178 * 330.00004 * 12 11 9 34 34 H 1.09010 * 109.47249 * 299.99870 * 13 12 11 35 35 H 1.08999 * 109.47366 * 59.99668 * 13 12 11 36 36 H 1.08999 * 109.47423 * 180.02562 * 13 12 11 37 37 H 1.09003 * 109.47065 * 209.99614 * 14 11 9 38 38 H 1.09005 * 109.47419 * 329.99998 * 14 11 9 39 39 H 0.97006 * 119.99640 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 4.0400 0.5860 0.4841 6 6 4.2770 2.0426 -1.2163 7 6 4.2764 2.7947 0.1169 8 1 5.2112 2.8277 0.6765 9 6 3.4119 4.0247 0.2215 10 8 2.2037 3.9193 0.2120 11 7 3.9814 5.2418 0.3256 12 6 5.4408 5.3690 0.3377 13 6 5.9501 5.5358 -1.0953 14 6 3.1410 6.4375 0.4267 15 6 2.8516 6.7269 1.8770 16 1 3.2538 6.0847 2.6465 17 6 2.0733 7.8116 2.2216 18 7 1.8211 8.0645 3.4873 19 14 1.3782 8.9228 0.8906 20 1 0.0474 8.4168 0.4684 21 1 1.2375 10.3026 1.4214 22 1 2.2970 8.9325 -0.2759 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 5.2122 1.5811 -1.5333 31 1 3.6521 2.4370 -2.0176 32 1 5.7246 6.2403 0.9279 33 1 5.8799 4.4736 0.7775 34 1 5.6662 4.6644 -1.6856 35 1 5.5110 6.4312 -1.5351 36 1 7.0360 5.6300 -1.0864 37 1 3.6620 7.2863 -0.0163 38 1 2.2040 6.2690 -0.1042 39 1 1.2732 8.8274 3.7297 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360329936.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:59 Heat of formation + Delta-G solvation = -45.967398 kcal Electronic energy + Delta-G solvation = -17648.297016 eV Core-core repulsion = 14976.508373 eV Total energy + Delta-G solvation = -2671.788643 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.14403 -38.19288 -36.75451 -34.96744 -34.60874 -31.85675 -29.84842 -28.21303 -25.75416 -24.30213 -23.27875 -22.53484 -21.55649 -19.43475 -19.11223 -18.14010 -17.06965 -16.38847 -16.18775 -15.67391 -15.49489 -14.90945 -14.63574 -14.44337 -14.08012 -13.85974 -13.78348 -13.40647 -13.22179 -13.17224 -12.97452 -12.54386 -12.39824 -12.14321 -12.07288 -11.89809 -11.88123 -11.76160 -11.63467 -11.00017 -10.86347 -10.79831 -10.29766 -9.37076 -8.36643 -6.41457 1.29180 1.33302 1.42020 1.72910 2.28078 2.33162 2.93472 2.97481 3.59029 3.75104 4.00532 4.09679 4.21251 4.24911 4.36649 4.43378 4.46224 4.59565 4.67499 4.78363 4.83254 4.91087 4.95235 5.00245 5.00540 5.04701 5.06824 5.11770 5.20221 5.38741 5.39161 5.45790 5.46101 5.66085 5.71065 6.23148 6.59520 6.76608 7.19796 7.49601 8.80541 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.021008 B = 0.007228 C = 0.005896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.496559 B = 3873.138377 C = 4747.715897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.116 4.116 3 C -0.078 4.078 4 C -0.121 4.121 5 H 0.138 0.862 6 C -0.124 4.124 7 C -0.201 4.201 8 H 0.143 0.857 9 C 0.522 3.478 10 O -0.586 6.586 11 N -0.600 5.600 12 C 0.100 3.900 13 C -0.157 4.157 14 C 0.227 3.773 15 C -0.535 4.535 16 H 0.026 0.974 17 C 0.011 3.989 18 N -0.945 5.945 19 Si 0.948 3.052 20 H -0.277 1.277 21 H -0.272 1.272 22 H -0.240 1.240 23 H 0.071 0.929 24 H 0.046 0.954 25 H 0.037 0.963 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.043 0.957 29 H 0.037 0.963 30 H 0.141 0.859 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.062 0.938 35 H 0.042 0.958 36 H 0.093 0.907 37 H 0.045 0.955 38 H 0.015 0.985 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.719 -13.222 -11.849 19.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.115 4.115 4 C -0.139 4.139 5 H 0.156 0.844 6 C -0.161 4.161 7 C -0.222 4.222 8 H 0.161 0.839 9 C 0.312 3.688 10 O -0.467 6.467 11 N -0.331 5.331 12 C -0.022 4.022 13 C -0.215 4.215 14 C 0.104 3.896 15 C -0.574 4.574 16 H 0.044 0.956 17 C -0.187 4.187 18 N -0.586 5.586 19 Si 0.771 3.229 20 H -0.202 1.202 21 H -0.197 1.197 22 H -0.163 1.163 23 H 0.090 0.910 24 H 0.065 0.935 25 H 0.056 0.944 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.159 0.841 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.113 0.887 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.112 0.888 37 H 0.063 0.937 38 H 0.033 0.967 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.031 -13.116 -11.737 19.347 hybrid contribution -0.803 1.140 0.392 1.449 sum 7.228 -11.976 -11.345 18.011 Atomic orbital electron populations 1.21775 0.96419 1.01912 1.00985 1.21544 0.95550 0.95569 1.02658 1.21103 0.93098 0.96338 1.00998 1.22552 0.94844 0.94352 1.02175 0.84436 1.23143 1.03659 1.00151 0.89131 1.22356 1.02181 0.90896 1.06725 0.83945 1.20457 0.88029 0.84848 0.75515 1.90635 1.16953 1.86539 1.52552 1.48035 1.08002 1.06185 1.70844 1.21739 0.78271 1.03336 0.98845 1.22119 1.02302 1.01901 0.95177 1.19247 0.91028 0.84441 0.94844 1.21564 1.32106 1.11346 0.92345 0.95552 1.25861 0.95798 0.99132 0.97942 1.70054 1.39789 1.30122 1.18586 0.85710 0.79499 0.77934 0.79777 1.20243 1.19720 1.16289 0.90984 0.93522 0.94390 0.91335 0.90465 0.93846 0.94467 0.84134 0.89854 0.91462 0.88735 0.91856 0.93843 0.88835 0.93667 0.96652 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.91 71.98 0.71 -2.94 16 2 C -0.12 -2.68 5.89 30.60 0.18 -2.50 16 3 C -0.08 -2.42 3.75 30.60 0.11 -2.31 16 4 C -0.12 -3.03 5.73 -10.79 -0.06 -3.09 16 5 H 0.14 2.59 8.08 -2.38 -0.02 2.58 16 6 C -0.12 -2.63 9.88 30.62 0.30 -2.33 16 7 C -0.20 -5.73 5.29 -11.51 -0.06 -5.79 16 8 H 0.14 3.32 6.44 -2.39 -0.02 3.30 16 9 C 0.52 21.84 7.44 87.66 0.65 22.49 16 10 O -0.59 -29.81 12.68 -3.05 -0.04 -29.85 16 11 N -0.60 -25.32 2.46 -826.16 -2.03 -27.34 16 12 C 0.10 3.08 5.95 86.38 0.51 3.59 16 13 C -0.16 -3.64 10.24 71.98 0.74 -2.91 16 14 C 0.23 11.50 4.23 85.63 0.36 11.86 16 15 C -0.54 -32.54 9.94 25.60 0.25 -32.29 16 16 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 17 C 0.01 0.64 5.47 84.66 0.46 1.10 16 18 N -0.95 -61.08 13.96 21.45 0.30 -60.78 16 19 Si 0.95 45.70 27.47 68.60 1.88 47.58 16 20 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 21 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 22 H -0.24 -10.43 6.54 99.48 0.65 -9.78 16 23 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.05 1.14 8.14 -2.39 -0.02 1.13 16 25 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 26 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.08 1.47 8.14 -2.39 -0.02 1.46 16 28 H 0.04 1.52 7.29 -2.39 -0.02 1.51 16 29 H 0.04 1.48 6.93 -2.39 -0.02 1.46 16 30 H 0.14 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.08 2.03 8.03 -2.39 -0.02 2.01 16 32 H 0.07 2.23 8.07 -2.39 -0.02 2.21 16 33 H 0.09 2.37 6.00 -2.39 -0.01 2.36 16 34 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.05 2.12 7.13 -2.39 -0.02 2.11 16 38 H 0.02 0.84 6.85 -2.38 -0.02 0.82 16 39 H 0.27 16.08 8.31 -92.70 -0.77 15.31 16 Total: -1.00 -77.39 315.51 5.23 -72.16 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: 0.94 Total: 13.35 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: 4.17 Total: -15.11 kcal Atomic # 7 Polarization: -86.39 SS G_CDS: -1.73 Total: -88.12 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: -0.04 Total: -29.85 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.88 Total: 47.58 kcal Total: -77.39 5.23 -72.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360329936.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.189 kcal (2) G-P(sol) polarization free energy of solvation -77.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds