Wall clock time and date at job start Sun Mar 29 2020 22:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47352 * 2 1 4 4 C 1.53001 * 109.47339 * 303.99043 * 3 2 1 5 5 C 1.52995 * 109.46786 * 295.51759 * 4 3 2 6 6 C 1.50705 * 109.46734 * 63.98877 * 3 2 1 7 7 O 1.21280 * 119.99749 * 246.55168 * 6 3 2 8 8 N 1.34781 * 120.00041 * 66.55221 * 6 3 2 9 9 C 1.46497 * 120.00010 * 184.84721 * 8 6 3 10 10 C 1.53001 * 109.47095 * 184.80583 * 9 8 6 11 11 C 1.50696 * 115.55015 * 304.15693 * 10 9 8 12 12 H 1.08005 * 119.99929 * 94.73694 * 11 10 9 13 13 C 1.37874 * 120.00381 * 274.46788 * 11 10 9 14 14 N 1.31519 * 119.99672 * 355.41544 * 13 11 10 15 15 Si 1.86794 * 120.00202 * 175.42697 * 13 11 10 16 16 H 1.48500 * 109.47397 * 59.99194 * 15 13 11 17 17 H 1.48500 * 109.47482 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47170 * 299.99503 * 15 13 11 19 19 C 1.53001 * 117.49877 * 89.83184 * 10 9 8 20 20 C 1.53002 * 117.49513 * 158.49069 * 10 9 8 21 21 H 1.08999 * 109.47005 * 305.68233 * 1 2 3 22 22 H 1.09005 * 109.47175 * 65.67745 * 1 2 3 23 23 H 1.08999 * 109.47170 * 185.68206 * 1 2 3 24 24 H 1.09002 * 109.46884 * 240.00158 * 2 1 3 25 25 H 1.09003 * 109.47338 * 120.00381 * 2 1 3 26 26 H 1.08999 * 109.47211 * 183.98489 * 3 2 1 27 27 H 1.08993 * 109.46995 * 55.51875 * 4 3 2 28 28 H 1.08998 * 109.46979 * 175.52287 * 4 3 2 29 29 H 1.09005 * 109.46951 * 185.32018 * 5 4 3 30 30 H 1.09002 * 109.47701 * 305.32069 * 5 4 3 31 31 H 1.09008 * 109.47190 * 65.32063 * 5 4 3 32 32 H 0.96998 * 119.99988 * 4.84828 * 8 6 3 33 33 H 1.09001 * 109.47018 * 64.80410 * 9 8 6 34 34 H 1.09004 * 109.47006 * 304.81013 * 9 8 6 35 35 H 0.96995 * 119.99892 * 185.00408 * 14 13 11 36 36 H 1.08989 * 117.49794 * 215.00456 * 19 10 9 37 37 H 1.09007 * 117.49653 * 0.02562 * 19 10 9 38 38 H 1.08997 * 117.49883 * 359.97438 * 20 10 9 39 39 H 1.09001 * 117.49896 * 144.97805 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4498 2.1922 -1.1960 5 6 1.9662 1.5685 -2.4941 6 6 1.6200 2.1237 1.2770 7 8 0.8235 3.0377 1.2430 8 7 2.1295 1.7173 2.4567 9 6 1.6430 2.3066 3.7066 10 6 2.4617 1.7630 4.8793 11 6 2.4932 0.2620 5.0095 12 1 3.3066 -0.3008 4.5756 13 6 1.4867 -0.3925 5.6874 14 7 0.5478 0.2977 6.2971 15 14 1.4566 -2.2595 5.7399 16 1 2.7016 -2.7569 6.3786 17 1 0.2818 -2.7138 6.5264 18 1 1.3629 -2.7922 4.3569 19 6 3.7220 2.5333 5.2782 20 6 2.4788 2.5846 6.1699 21 1 -0.3633 0.5994 0.8347 22 1 -0.3634 0.4233 -0.9365 23 1 -0.3633 -1.0226 0.1017 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 3.1277 1.4433 -0.0714 27 1 0.3624 2.1234 -1.1672 28 1 1.7489 3.2394 -1.1520 29 1 1.6222 2.1594 -3.3431 30 1 3.0560 1.5517 -2.4809 31 1 1.5881 0.5500 -2.5834 32 1 2.8183 1.0347 2.4782 33 1 0.5932 2.0482 3.8457 34 1 1.7475 3.3907 3.6621 35 1 -0.1185 -0.1589 6.8341 36 1 4.5739 1.9545 5.6348 37 1 3.9676 3.4277 4.7055 38 1 1.9071 3.5125 6.1833 39 1 2.5125 2.0394 7.1132 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404161741.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:46 Heat of formation + Delta-G solvation = -60.351060 kcal Electronic energy + Delta-G solvation = -17807.901427 eV Core-core repulsion = 15135.489061 eV Total energy + Delta-G solvation = -2672.412366 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.98782 -38.60760 -36.90799 -34.92651 -33.96184 -32.00516 -29.20778 -27.71737 -26.65671 -24.34418 -22.97688 -22.19892 -21.32193 -19.97826 -18.24573 -17.66603 -16.90780 -16.74530 -16.57420 -15.96708 -15.29735 -15.15184 -14.52584 -14.24306 -14.15482 -13.71218 -13.57012 -13.47452 -12.93740 -12.89390 -12.78581 -12.56070 -12.38798 -12.24754 -12.05808 -11.99321 -11.48784 -11.40047 -11.36322 -10.95458 -10.67341 -10.42862 -10.03652 -9.77182 -8.08840 -6.23768 1.44201 1.45354 1.51747 1.78941 2.40619 2.48446 3.19068 3.48767 3.80440 3.90063 3.98823 4.23515 4.35941 4.38926 4.52426 4.52792 4.62649 4.67731 4.72418 4.79471 4.87509 4.95701 4.99408 5.04502 5.06030 5.24715 5.26610 5.28902 5.30624 5.38276 5.52167 5.59717 5.62537 5.73701 5.77784 6.36603 6.81495 6.86704 7.43904 7.46799 8.98055 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.023057 B = 0.007565 C = 0.006293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.069849 B = 3700.425922 C = 4448.052574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.111 4.111 3 C -0.100 4.100 4 C -0.104 4.104 5 C -0.144 4.144 6 C 0.504 3.496 7 O -0.600 6.600 8 N -0.699 5.699 9 C 0.180 3.820 10 C 0.003 3.997 11 C -0.503 4.503 12 H 0.066 0.934 13 C 0.025 3.975 14 N -0.909 5.909 15 Si 0.949 3.051 16 H -0.270 1.270 17 H -0.294 1.294 18 H -0.266 1.266 19 C -0.180 4.180 20 C -0.154 4.154 21 H 0.018 0.982 22 H 0.070 0.930 23 H 0.062 0.938 24 H 0.106 0.894 25 H 0.062 0.938 26 H 0.117 0.883 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.410 0.590 33 H 0.022 0.978 34 H 0.035 0.965 35 H 0.258 0.742 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.066 0.934 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.047 -1.623 -13.495 14.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.148 4.148 3 C -0.121 4.121 4 C -0.142 4.142 5 C -0.201 4.201 6 C 0.292 3.708 7 O -0.483 6.483 8 N -0.348 5.348 9 C 0.055 3.945 10 C 0.002 3.998 11 C -0.540 4.540 12 H 0.084 0.916 13 C -0.175 4.175 14 N -0.546 5.546 15 Si 0.775 3.225 16 H -0.195 1.195 17 H -0.220 1.220 18 H -0.191 1.191 19 C -0.217 4.217 20 C -0.193 4.193 21 H 0.037 0.963 22 H 0.089 0.911 23 H 0.081 0.919 24 H 0.125 0.875 25 H 0.081 0.919 26 H 0.135 0.865 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.246 0.754 33 H 0.040 0.960 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.085 0.915 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.278 -1.021 -13.434 14.135 hybrid contribution -0.323 -0.907 0.943 1.347 sum 3.955 -1.928 -12.491 13.243 Atomic orbital electron populations 1.21838 0.96642 1.01479 1.01233 1.21534 0.95726 0.93574 1.03989 1.21476 1.03185 0.96511 0.90921 1.21345 1.00596 0.98698 0.93586 1.21783 1.01745 1.01278 0.95341 1.21458 0.80263 0.82735 0.86364 1.90607 1.37295 1.32239 1.88119 1.45899 1.41634 1.42103 1.05178 1.20492 0.96352 0.94027 0.83639 1.19109 0.95498 0.93195 0.92010 1.20593 1.07564 0.89912 1.35980 0.91554 1.25712 0.94852 1.01996 0.94976 1.70120 1.16135 1.36935 1.31435 0.85760 0.77295 0.81050 0.78444 1.19470 1.21999 1.19132 1.23030 0.92197 1.01879 1.04567 1.22363 1.00890 1.00075 0.95929 0.96291 0.91112 0.91855 0.87539 0.91931 0.86468 0.92531 0.93052 0.91978 0.91502 0.91455 0.75412 0.96006 0.94672 0.93275 0.89590 0.89633 0.91521 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.21 9.16 71.98 0.66 -3.55 16 2 C -0.11 -2.62 5.33 30.59 0.16 -2.46 16 3 C -0.10 -2.60 2.51 -11.54 -0.03 -2.63 16 4 C -0.10 -2.54 4.39 30.59 0.13 -2.40 16 5 C -0.14 -2.36 9.52 71.98 0.69 -1.68 16 6 C 0.50 18.79 5.92 87.66 0.52 19.31 16 7 O -0.60 -27.27 15.98 -3.03 -0.05 -27.32 16 8 N -0.70 -27.36 5.37 -463.05 -2.49 -29.84 16 9 C 0.18 8.36 5.58 86.38 0.48 8.84 16 10 C 0.00 0.12 1.61 -52.93 -0.09 0.04 16 11 C -0.50 -25.29 8.14 25.60 0.21 -25.08 16 12 H 0.07 3.18 7.82 -2.91 -0.02 3.15 16 13 C 0.03 1.33 5.43 84.65 0.46 1.79 16 14 N -0.91 -51.31 12.63 21.45 0.27 -51.04 16 15 Si 0.95 41.47 29.54 68.60 2.03 43.49 16 16 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 17 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 18 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 19 C -0.18 -7.32 9.93 30.62 0.30 -7.01 16 20 C -0.15 -7.20 9.14 30.62 0.28 -6.92 16 21 H 0.02 0.64 7.17 -2.39 -0.02 0.63 16 22 H 0.07 1.68 6.60 -2.38 -0.02 1.67 16 23 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.11 1.81 6.87 -2.39 -0.02 1.79 16 25 H 0.06 1.62 8.11 -2.39 -0.02 1.60 16 26 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 27 H 0.06 1.55 6.23 -2.39 -0.01 1.54 16 28 H 0.05 1.38 8.07 -2.39 -0.02 1.36 16 29 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 0.97 6.91 -2.38 -0.02 0.95 16 32 H 0.41 14.53 8.00 -92.71 -0.74 13.79 16 33 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.04 1.63 8.06 -2.39 -0.02 1.61 16 35 H 0.26 14.13 8.32 -92.71 -0.77 13.36 16 36 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 37 H 0.09 3.13 8.14 -2.38 -0.02 3.11 16 38 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 39 H 0.06 3.30 8.14 -2.39 -0.02 3.29 16 Total: -1.00 -62.66 316.94 3.82 -58.84 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: 0.27 Total: 27.62 kcal Atomic # 6 Polarization: -25.54 SS G_CDS: 3.78 Total: -21.76 kcal Atomic # 7 Polarization: -78.66 SS G_CDS: -2.22 Total: -80.88 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -0.05 Total: -27.32 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.49 kcal Total: -62.66 3.82 -58.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404161741.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.509 kcal (2) G-P(sol) polarization free energy of solvation -62.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds