Wall clock time and date at job start Mon Mar 30 2020 00:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47225 * 2 1 4 4 H 1.09005 * 110.01201 * 53.33394 * 3 2 1 5 5 C 1.54261 * 110.03455 * 291.89374 * 3 2 1 6 6 C 1.54887 * 104.19669 * 217.10253 * 5 3 2 7 7 C 1.54891 * 102.74924 * 37.94156 * 6 5 3 8 8 C 1.53872 * 110.03402 * 174.72170 * 3 2 1 9 9 H 1.08996 * 110.03634 * 238.62241 * 8 3 2 10 10 C 1.50700 * 110.03419 * 0.02562 * 8 3 2 11 11 O 1.21286 * 119.99976 * 86.16845 * 10 8 3 12 12 N 1.34777 * 120.00179 * 266.17806 * 10 8 3 13 13 C 1.46499 * 119.99858 * 179.72282 * 12 10 8 14 14 H 1.08999 * 109.47450 * 35.27236 * 13 12 10 15 15 C 1.53008 * 109.46847 * 275.26925 * 13 12 10 16 16 C 1.50700 * 109.46919 * 155.27780 * 13 12 10 17 17 H 1.08003 * 120.00218 * 359.97438 * 16 13 12 18 18 C 1.37881 * 119.99881 * 180.02562 * 16 13 12 19 19 N 1.31512 * 120.00063 * 359.97438 * 18 16 13 20 20 Si 1.86802 * 119.99898 * 179.97438 * 18 16 13 21 21 H 1.48498 * 109.47270 * 59.99787 * 20 18 16 22 22 H 1.48496 * 109.47336 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.46815 * 299.99954 * 20 18 16 24 24 H 1.09003 * 109.47339 * 299.99693 * 1 2 3 25 25 H 1.09002 * 109.47398 * 59.99114 * 1 2 3 26 26 H 1.08998 * 109.47414 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47015 * 240.00595 * 2 1 3 28 28 H 1.08995 * 109.47447 * 120.00216 * 2 1 3 29 29 H 1.08999 * 110.48929 * 335.78311 * 5 3 2 30 30 H 1.09005 * 110.48799 * 98.29175 * 5 3 2 31 31 H 1.09003 * 110.76094 * 156.25415 * 6 5 3 32 32 H 1.09005 * 110.75899 * 279.44166 * 6 5 3 33 33 H 1.08995 * 110.48724 * 203.38302 * 7 6 5 34 34 H 1.09000 * 110.48621 * 80.73821 * 7 6 5 35 35 H 0.96998 * 119.99540 * 0.02562 * 12 10 8 36 36 H 1.08998 * 109.46528 * 60.00850 * 15 13 12 37 37 H 1.09004 * 109.46878 * 180.02562 * 15 13 12 38 38 H 1.08999 * 109.47349 * 300.00373 * 15 13 12 39 39 H 0.97001 * 119.99657 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5877 1.9981 0.8216 5 6 1.7066 2.1209 -1.3447 6 6 2.9363 3.0175 -1.6330 7 6 4.1176 2.1478 -1.1357 8 6 3.5728 1.4596 0.1330 9 1 3.8645 2.0235 1.0190 10 6 4.0991 0.0503 0.2216 11 8 4.3363 -0.5733 -0.7913 12 7 4.3061 -0.5173 1.4264 13 6 4.8120 -1.8895 1.5124 14 1 5.5127 -2.0702 0.6973 15 6 3.6432 -2.8714 1.4074 16 6 5.5145 -2.0840 2.8314 17 1 5.5781 -1.2671 3.5350 18 6 6.0768 -3.3047 3.1394 19 7 5.9998 -4.2992 2.2825 20 14 6.9482 -3.5456 4.7741 21 1 5.9938 -3.2998 5.8848 22 1 7.4610 -4.9365 4.8615 23 1 8.0823 -2.5922 4.8757 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8932 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.5868 1.3740 -2.1295 30 1 0.8041 2.7254 -1.2537 31 1 3.0267 3.2178 -2.7006 32 1 2.8753 3.9493 -1.0705 33 1 4.9758 2.7738 -0.8915 34 1 4.3872 1.4053 -1.8867 35 1 4.1159 -0.0187 2.2364 36 1 3.1352 -2.7307 0.4534 37 1 4.0196 -3.8924 1.4719 38 1 2.9425 -2.6907 2.2225 39 1 6.3951 -5.1581 2.4994 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448828140.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:04:01 Heat of formation + Delta-G solvation = -71.805972 kcal Electronic energy + Delta-G solvation = -18024.474038 eV Core-core repulsion = 15351.564950 eV Total energy + Delta-G solvation = -2672.909088 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.89232 -37.09028 -34.67542 -32.95933 -32.30066 -29.78679 -28.05362 -27.40633 -25.22988 -22.72860 -22.01891 -20.40816 -19.85588 -18.76416 -16.76894 -16.09891 -15.47950 -15.13804 -14.60502 -14.38166 -13.89313 -13.71208 -13.06717 -13.00480 -12.39523 -12.26814 -12.02145 -11.51488 -11.41909 -11.11840 -10.99600 -10.96134 -10.89482 -10.75179 -10.59791 -10.49991 -10.31983 -10.27453 -10.18705 -10.14615 -9.02160 -8.81848 -8.51037 -7.81627 -6.09730 -4.18907 3.26663 3.31863 3.33074 3.49212 4.16420 4.41187 4.66745 4.76344 4.91954 5.22253 5.31785 5.38201 5.48311 5.56822 5.69542 5.71996 5.73942 5.78105 5.86501 5.98734 6.00266 6.17585 6.19631 6.29240 6.37023 6.49912 6.56810 6.66759 6.86583 7.00992 7.19582 7.52900 7.61581 7.73752 7.96227 8.18975 8.74615 8.83044 9.22704 9.49243 10.96120 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.036191 B = 0.006073 C = 0.005697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.494569 B = 4609.196332 C = 4913.386114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C -0.073 4.073 4 H 0.073 0.927 5 C -0.116 4.116 6 C -0.123 4.123 7 C -0.112 4.112 8 C -0.115 4.115 9 H 0.083 0.917 10 C 0.514 3.486 11 O -0.556 6.556 12 N -0.712 5.712 13 C 0.265 3.735 14 H 0.047 0.953 15 C -0.145 4.145 16 C -0.533 4.533 17 H 0.060 0.940 18 C 0.066 3.934 19 N -0.884 5.884 20 Si 0.901 3.099 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.277 1.277 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.387 0.613 36 H 0.015 0.985 37 H 0.088 0.912 38 H 0.025 0.975 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.389 12.107 -3.317 15.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.171 4.171 3 C -0.092 4.092 4 H 0.092 0.908 5 C -0.154 4.154 6 C -0.160 4.160 7 C -0.150 4.150 8 C -0.136 4.136 9 H 0.101 0.899 10 C 0.299 3.701 11 O -0.436 6.436 12 N -0.359 5.359 13 C 0.163 3.837 14 H 0.065 0.935 15 C -0.204 4.204 16 C -0.572 4.572 17 H 0.078 0.922 18 C -0.137 4.137 19 N -0.522 5.522 20 Si 0.728 3.272 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.202 1.202 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.219 0.781 36 H 0.034 0.966 37 H 0.107 0.893 38 H 0.044 0.956 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.139 11.411 -4.044 14.588 hybrid contribution 0.404 0.017 1.441 1.496 sum -7.735 11.428 -2.604 14.043 Atomic orbital electron populations 1.21746 0.96168 1.01373 1.01108 1.21875 0.95556 0.95796 1.03823 1.21663 0.92813 0.96764 0.97991 0.90827 1.22436 0.97447 0.98441 0.97066 1.22470 0.95076 0.97876 1.00616 1.22334 0.97252 0.98632 0.96786 1.22060 0.96371 0.95034 1.00175 0.89902 1.20206 0.77688 0.87898 0.84273 1.90620 1.52895 1.64723 1.35329 1.46596 1.64920 1.17864 1.06516 1.18693 0.92023 0.75420 0.97573 0.93546 1.22068 0.97861 1.03952 0.96527 1.21204 1.36336 0.97590 1.02067 0.92220 1.24888 0.95888 0.95696 0.97240 1.69897 1.44327 1.02785 1.35146 0.86521 0.79869 0.77261 0.83509 1.20194 1.21137 1.20207 0.93156 0.93052 0.92944 0.90856 0.90898 0.91295 0.91969 0.91705 0.91822 0.91849 0.89581 0.78107 0.96617 0.89320 0.95611 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.77 37.15 0.36 -1.45 16 2 C -0.13 -2.02 4.12 -26.73 -0.11 -2.13 16 3 C -0.07 -0.97 2.93 -89.50 -0.26 -1.23 16 4 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 5 C -0.12 -1.35 5.55 -25.08 -0.14 -1.49 16 6 C -0.12 -1.37 6.91 -24.74 -0.17 -1.54 16 7 C -0.11 -1.56 6.31 -25.07 -0.16 -1.72 16 8 C -0.11 -1.72 3.29 -90.65 -0.30 -2.02 16 9 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 10 C 0.51 10.26 4.64 -10.99 -0.05 10.21 16 11 O -0.56 -13.27 14.69 5.55 0.08 -13.19 16 12 N -0.71 -14.96 4.52 -54.93 -0.25 -15.21 16 13 C 0.26 6.81 2.56 -69.08 -0.18 6.63 16 14 H 0.05 1.39 7.58 -51.93 -0.39 0.99 16 15 C -0.15 -3.64 9.26 37.16 0.34 -3.30 16 16 C -0.53 -14.30 8.73 -34.44 -0.30 -14.60 16 17 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 18 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 19 N -0.88 -25.17 11.32 55.43 0.63 -24.54 16 20 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.57 7.52 -51.93 -0.39 0.18 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 1.30 7.11 -51.93 -0.37 0.93 16 28 H 0.07 1.25 6.80 -51.93 -0.35 0.90 16 29 H 0.07 0.87 7.75 -51.93 -0.40 0.47 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 1.42 6.89 -51.93 -0.36 1.06 16 35 H 0.39 7.15 8.54 -40.82 -0.35 6.80 16 36 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 38 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 306.49 15.07 4.62 4.62 Total: -1.00 -29.78 306.49 -7.70 -37.47 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -6.70 Total: 6.00 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: -1.05 Total: -10.94 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.38 Total: -39.76 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.08 Total: -13.19 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.78 -7.70 -37.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448828140.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.334 kcal (2) G-P(sol) polarization free energy of solvation -29.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds