Wall clock time and date at job start Mon Mar 30 2020 00:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53009 * 109.47147 * 2 1 4 4 H 1.08999 * 110.01463 * 306.39380 * 3 2 1 5 5 C 1.54266 * 110.07226 * 67.80738 * 3 2 1 6 6 C 1.55238 * 104.23333 * 142.91908 * 5 3 2 7 7 C 1.54894 * 102.58338 * 322.08174 * 6 5 3 8 8 C 1.53869 * 110.02997 * 184.99581 * 3 2 1 9 9 H 1.08995 * 110.03881 * 359.95547 * 8 3 2 10 10 C 1.50706 * 110.02990 * 121.38439 * 8 3 2 11 11 O 1.21285 * 119.99618 * 358.61856 * 10 8 3 12 12 N 1.34775 * 120.00055 * 178.62087 * 10 8 3 13 13 C 1.46500 * 119.99922 * 179.97438 * 12 10 8 14 14 C 1.53000 * 109.46973 * 179.97438 * 13 12 10 15 15 C 1.50694 * 109.46965 * 179.97438 * 14 13 12 16 16 H 1.08004 * 120.00500 * 0.02562 * 15 14 13 17 17 C 1.37887 * 119.99933 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99995 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99769 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46854 * 90.00536 * 19 17 15 21 21 H 1.48505 * 109.47140 * 209.99721 * 19 17 15 22 22 H 1.48498 * 109.47538 * 330.00645 * 19 17 15 23 23 H 1.09005 * 109.46732 * 59.99965 * 1 2 3 24 24 H 1.08994 * 109.46941 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47258 * 300.00393 * 1 2 3 26 26 H 1.08993 * 109.47288 * 239.99716 * 2 1 3 27 27 H 1.08995 * 109.46783 * 119.99900 * 2 1 3 28 28 H 1.09005 * 110.48526 * 261.59780 * 5 3 2 29 29 H 1.09007 * 110.48724 * 24.10264 * 5 3 2 30 30 H 1.08996 * 110.89448 * 203.79739 * 6 5 3 31 31 H 1.08993 * 110.76342 * 80.31404 * 6 5 3 32 32 H 1.09002 * 110.48891 * 279.18596 * 7 6 5 33 33 H 1.08998 * 110.48494 * 156.67683 * 7 6 5 34 34 H 0.96995 * 119.99841 * 359.97438 * 12 10 8 35 35 H 1.08997 * 109.47259 * 299.99931 * 13 12 10 36 36 H 1.08996 * 109.46909 * 60.00042 * 13 12 10 37 37 H 1.08997 * 109.47310 * 300.00191 * 14 13 12 38 38 H 1.09002 * 109.47001 * 59.99996 * 14 13 12 39 39 H 0.96996 * 119.99964 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.5915 1.9969 -0.8244 5 6 1.7006 2.1242 1.3416 6 6 2.9311 3.0240 1.6348 7 6 4.1124 2.1507 1.1436 8 6 3.5735 1.4594 -0.1259 9 1 3.9545 0.4400 -0.1862 10 6 3.9824 2.2372 -1.3503 11 8 3.1360 2.7142 -2.0763 12 7 5.2886 2.4025 -1.6385 13 6 5.6860 3.1581 -2.8290 14 6 7.2127 3.1965 -2.9225 15 6 7.6215 3.9732 -4.1475 16 1 6.8678 4.3974 -4.7945 17 6 8.9578 4.1423 -4.4424 18 7 9.8755 3.6253 -3.6550 19 14 9.4645 5.1044 -5.9613 20 1 9.6158 6.5395 -5.6105 21 1 10.7573 4.5805 -6.4706 22 1 8.4233 4.9584 -7.0100 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 0.7997 2.7302 1.2444 29 1 1.5749 1.3789 2.1271 30 1 3.0187 3.2272 2.7020 31 1 2.8749 3.9526 1.0669 32 1 4.3786 1.4099 1.8976 33 1 4.9732 2.7743 0.9022 34 1 5.9654 2.0213 -1.0577 35 1 5.2792 2.6760 -3.7179 36 1 5.3009 4.1754 -2.7590 37 1 7.6191 3.6789 -2.0336 38 1 7.5981 2.1793 -2.9923 39 1 10.8155 3.7440 -3.8626 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000450545502.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:03:45 Heat of formation + Delta-G solvation = -99.974658 kcal Electronic energy + Delta-G solvation = -17145.911740 eV Core-core repulsion = 14471.781167 eV Total energy + Delta-G solvation = -2674.130574 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.29366 -38.61701 -36.56777 -34.88059 -33.97552 -31.84404 -29.98351 -28.41238 -26.73049 -24.13163 -22.94417 -22.40928 -21.18993 -20.21022 -18.56279 -18.03608 -16.87938 -16.76180 -16.49690 -15.82703 -15.75501 -15.22373 -14.66086 -14.54730 -14.33228 -13.99725 -13.70196 -13.24454 -12.96073 -12.82179 -12.56008 -12.48029 -12.27882 -12.03076 -11.88889 -11.78705 -11.72925 -11.58689 -11.46364 -11.32467 -11.24985 -10.65344 -10.61880 -10.01769 -8.25744 -6.36482 1.40670 1.41152 1.52767 1.67871 2.26820 2.45544 3.08819 3.53471 3.67396 3.78025 4.14781 4.25590 4.31901 4.45162 4.45495 4.49179 4.53949 4.74280 4.77804 4.80475 4.82525 4.84188 4.96453 5.02515 5.14105 5.22505 5.25227 5.29262 5.32017 5.41596 5.45926 5.48678 5.55649 5.65053 5.77250 6.14598 6.64792 6.76468 7.30393 7.32918 8.86111 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.047056 B = 0.004182 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.890871 B = 6694.047863 C = 6919.768002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.112 4.112 3 C -0.089 4.089 4 H 0.062 0.938 5 C -0.109 4.109 6 C -0.128 4.128 7 C -0.113 4.113 8 C -0.106 4.106 9 H 0.118 0.882 10 C 0.508 3.492 11 O -0.591 6.591 12 N -0.718 5.718 13 C 0.140 3.860 14 C 0.024 3.976 15 C -0.549 4.549 16 H 0.057 0.943 17 C 0.008 3.992 18 N -0.926 5.926 19 Si 0.965 3.035 20 H -0.272 1.272 21 H -0.278 1.278 22 H -0.267 1.267 23 H 0.039 0.961 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.050 0.950 27 H 0.082 0.918 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.042 0.958 32 H 0.106 0.894 33 H 0.060 0.940 34 H 0.410 0.590 35 H 0.043 0.957 36 H 0.042 0.958 37 H 0.009 0.991 38 H 0.009 0.991 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.792 -7.086 13.037 20.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C -0.108 4.108 4 H 0.081 0.919 5 C -0.146 4.146 6 C -0.165 4.165 7 C -0.151 4.151 8 C -0.127 4.127 9 H 0.136 0.864 10 C 0.296 3.704 11 O -0.472 6.472 12 N -0.369 5.369 13 C 0.016 3.984 14 C -0.013 4.013 15 C -0.588 4.588 16 H 0.075 0.925 17 C -0.191 4.191 18 N -0.565 5.565 19 Si 0.790 3.210 20 H -0.197 1.197 21 H -0.203 1.203 22 H -0.192 1.192 23 H 0.059 0.941 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.101 0.899 28 H 0.081 0.919 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.061 0.939 32 H 0.124 0.876 33 H 0.079 0.921 34 H 0.246 0.754 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.027 0.973 38 H 0.027 0.973 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.191 -6.767 12.527 20.103 hybrid contribution 0.931 0.508 -0.942 1.419 sum -13.260 -6.259 11.585 18.688 Atomic orbital electron populations 1.21764 0.95266 1.01996 1.01731 1.21614 0.96537 0.94625 1.02201 1.21833 0.92123 0.97681 0.99163 0.91932 1.22468 0.97535 0.98576 0.96056 1.22585 0.94788 0.97512 1.01641 1.22437 0.98002 0.99430 0.95238 1.22095 0.98269 1.00360 0.91982 0.86413 1.21387 0.81766 0.79900 0.87368 1.90608 1.51515 1.51964 1.53118 1.46164 1.07642 1.55227 1.27826 1.21194 0.96585 0.94205 0.86375 1.19120 0.89301 0.96429 0.96497 1.21468 0.92505 1.34732 1.10070 0.92491 1.25869 0.96537 0.96593 1.00069 1.70051 1.01078 1.45934 1.39433 0.85444 0.77755 0.78742 0.79103 1.19708 1.20350 1.19151 0.94144 0.91783 0.91710 0.93123 0.89937 0.91912 0.89176 0.89194 0.93908 0.87590 0.92088 0.75437 0.93888 0.93933 0.97284 0.97291 0.92473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.77 71.98 0.70 -1.76 16 2 C -0.11 -2.02 5.06 30.60 0.15 -1.87 16 3 C -0.09 -2.02 2.52 -10.07 -0.03 -2.05 16 4 H 0.06 1.90 6.39 -2.39 -0.02 1.89 16 5 C -0.11 -1.95 5.54 31.79 0.18 -1.78 16 6 C -0.13 -2.46 6.94 32.01 0.22 -2.24 16 7 C -0.11 -2.20 6.30 31.67 0.20 -2.00 16 8 C -0.11 -2.52 2.95 -10.82 -0.03 -2.55 16 9 H 0.12 2.31 7.67 -2.39 -0.02 2.29 16 10 C 0.51 17.56 7.09 87.66 0.62 18.18 16 11 O -0.59 -25.45 15.21 -3.04 -0.05 -25.50 16 12 N -0.72 -25.73 5.23 -463.06 -2.42 -28.15 16 13 C 0.14 6.25 5.61 86.38 0.48 6.74 16 14 C 0.02 1.23 5.09 29.85 0.15 1.38 16 15 C -0.55 -31.19 9.11 25.60 0.23 -30.96 16 16 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 17 C 0.01 0.47 5.46 84.66 0.46 0.93 16 18 N -0.93 -54.49 13.29 21.45 0.28 -54.21 16 19 Si 0.97 43.93 29.54 68.60 2.03 45.96 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 21 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 22 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 23 H 0.04 0.77 8.14 -2.38 -0.02 0.75 16 24 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.06 0.92 7.51 -2.39 -0.02 0.90 16 26 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.08 1.14 8.01 -2.39 -0.02 1.12 16 28 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.09 1.20 7.76 -2.38 -0.02 1.18 16 30 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.06 1.34 7.40 -2.39 -0.02 1.33 16 34 H 0.41 12.55 8.25 -92.71 -0.76 11.78 16 35 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -67.32 314.64 3.44 -63.88 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 0.24 Total: 15.98 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: 3.35 Total: -17.97 kcal Atomic # 7 Polarization: -80.22 SS G_CDS: -2.14 Total: -82.36 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -0.05 Total: -25.50 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -67.32 3.44 -63.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450545502.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.092 kcal (2) G-P(sol) polarization free energy of solvation -67.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds