Wall clock time and date at job start Sun Mar 29 2020 22:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50704 * 109.46994 * 2 1 4 4 C 1.30998 * 119.99451 * 124.99994 * 3 2 1 5 5 C 1.50710 * 119.99730 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47025 * 125.00257 * 5 4 3 7 7 N 1.46900 * 109.46697 * 180.02562 * 6 5 4 8 8 C 1.48720 * 111.01831 * 74.48907 * 7 6 5 9 9 C 1.54381 * 104.51692 * 158.96284 * 8 7 6 10 10 C 1.54257 * 105.14978 * 336.27274 * 9 8 7 11 11 O 1.42906 * 110.32239 * 240.94794 * 10 9 8 12 12 C 1.50697 * 110.32628 * 118.84329 * 10 9 8 13 13 H 1.07995 * 120.00073 * 241.44522 * 12 10 9 14 14 C 1.37883 * 119.99811 * 61.45328 * 12 10 9 15 15 N 1.31514 * 119.99933 * 0.02562 * 14 12 10 16 16 Si 1.86796 * 119.99722 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46901 * 60.00150 * 16 14 12 18 18 H 1.48501 * 109.47188 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47596 * 299.99981 * 16 14 12 20 20 C 1.48567 * 110.99718 * 189.99889 * 7 6 5 21 21 H 1.09000 * 109.47363 * 299.99880 * 1 2 3 22 22 H 1.08998 * 109.47437 * 60.00025 * 1 2 3 23 23 H 1.09000 * 109.47131 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47363 * 240.00120 * 2 1 3 25 25 H 1.08998 * 109.47437 * 119.99975 * 2 1 3 26 26 H 1.07994 * 120.00530 * 305.00010 * 3 2 1 27 27 H 1.07996 * 120.00776 * 0.02562 * 4 3 2 28 28 H 1.09001 * 109.46820 * 4.99661 * 5 4 3 29 29 H 1.08997 * 109.46909 * 245.00093 * 5 4 3 30 30 H 1.08997 * 109.47422 * 59.99733 * 6 5 4 31 31 H 1.08999 * 109.46632 * 299.99738 * 6 5 4 32 32 H 1.09004 * 110.38960 * 40.24251 * 8 7 6 33 33 H 1.08996 * 110.50963 * 277.74694 * 8 7 6 34 34 H 1.09002 * 110.32526 * 217.32092 * 9 8 7 35 35 H 1.08998 * 110.32190 * 95.21733 * 9 8 7 36 36 H 0.96695 * 113.99929 * 298.55053 * 11 10 9 37 37 H 0.97002 * 119.99478 * 180.02562 * 15 14 12 38 38 H 1.08999 * 110.41133 * 82.17552 * 20 7 6 39 39 H 1.09001 * 110.41003 * 319.73948 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.8641 1.8214 0.9294 5 6 3.3660 3.2425 0.9298 6 6 3.0709 3.8872 2.2855 7 7 3.5596 5.2725 2.2856 8 6 2.6710 6.1516 1.4797 9 6 2.9635 7.5764 1.9974 10 6 3.5158 7.3813 3.4245 11 8 2.6705 8.0300 4.3768 12 6 4.9201 7.9195 3.5204 13 1 5.7361 7.2576 3.7700 14 6 5.1631 9.2570 3.2895 15 7 4.1692 10.0631 2.9862 16 14 6.9037 9.9242 3.4091 17 1 7.7697 9.2270 2.4246 18 1 6.8968 11.3803 3.1178 19 1 7.4286 9.6955 4.7793 20 6 3.5100 5.8544 3.6517 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 1.7065 2.1088 -0.7661 27 1 3.1902 1.1334 1.6953 28 1 2.8640 3.8052 0.1427 29 1 4.4412 3.2480 0.7512 30 1 3.5728 3.3243 3.0725 31 1 1.9956 3.8816 2.4640 32 1 1.6258 5.8928 1.6490 33 1 2.9161 6.0743 0.4205 34 1 2.0467 8.1654 2.0234 35 1 3.7075 8.0630 1.3668 36 1 2.6013 8.9866 4.2539 37 1 4.3403 11.0039 2.8235 38 1 4.3860 5.5521 4.2257 39 1 2.5964 5.5493 4.1619 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592150870.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:15 Heat of formation + Delta-G solvation = -48.106232 kcal Electronic energy + Delta-G solvation = -17191.478195 eV Core-core repulsion = 14519.596805 eV Total energy + Delta-G solvation = -2671.881390 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.42517 -36.43457 -34.87878 -32.58997 -32.05022 -29.85594 -28.03224 -27.08281 -24.54057 -23.19338 -21.56988 -20.02831 -19.71962 -19.20471 -16.97037 -15.48273 -15.11844 -14.85360 -14.76574 -14.22506 -13.88422 -13.77592 -13.41758 -12.72730 -12.52795 -12.23796 -12.11340 -11.91900 -11.75672 -11.37450 -11.16569 -11.05904 -10.98129 -10.72960 -10.56573 -10.45839 -10.29322 -10.22982 -9.87737 -9.01777 -8.90878 -8.51699 -8.08211 -7.77033 -6.11891 -4.17324 2.24666 3.31150 3.34835 3.38867 4.39095 4.50856 4.81791 4.93487 5.13318 5.17643 5.21599 5.35842 5.47752 5.57858 5.68730 5.74004 5.78872 5.84508 5.94459 5.98610 6.03666 6.11699 6.23543 6.28505 6.34299 6.46869 6.55972 6.71957 6.88417 6.92307 7.11650 7.27577 7.61342 7.72070 7.77870 7.91074 8.27255 8.84859 9.47143 9.56068 10.95617 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.045042 B = 0.004467 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.493563 B = 6266.870825 C = 6486.139796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.171 4.171 4 C -0.146 4.146 5 C -0.086 4.086 6 C 0.050 3.950 7 N -0.502 5.502 8 C 0.033 3.967 9 C -0.121 4.121 10 C 0.249 3.751 11 O -0.595 6.595 12 C -0.518 4.518 13 H 0.061 0.939 14 C 0.065 3.935 15 N -0.901 5.901 16 Si 0.900 3.100 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.277 1.277 20 C 0.053 3.947 21 H 0.055 0.945 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.107 0.893 27 H 0.106 0.894 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.029 0.971 32 H 0.027 0.973 33 H 0.065 0.935 34 H 0.049 0.951 35 H 0.075 0.925 36 H 0.382 0.618 37 H 0.266 0.734 38 H 0.076 0.924 39 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.723 -13.757 -5.284 15.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.131 4.131 3 C -0.190 4.190 4 C -0.165 4.165 5 C -0.123 4.123 6 C -0.079 4.079 7 N -0.227 5.227 8 C -0.095 4.095 9 C -0.160 4.160 10 C 0.209 3.791 11 O -0.404 6.404 12 C -0.557 4.557 13 H 0.080 0.920 14 C -0.136 4.136 15 N -0.542 5.542 16 Si 0.728 3.272 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.074 4.074 21 H 0.074 0.926 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.125 0.875 27 H 0.124 0.876 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.047 0.953 32 H 0.045 0.955 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.232 0.768 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -4.284 -14.196 -5.308 15.750 hybrid contribution 0.150 1.000 0.044 1.013 sum -4.135 -13.195 -5.264 14.796 Atomic orbital electron populations 1.21716 0.95387 1.01350 1.02100 1.20611 0.95989 0.94558 1.01955 1.22832 0.99243 0.97121 0.99757 1.22928 0.97867 0.97259 0.98402 1.20649 1.01957 0.91892 0.97829 1.22170 0.97538 0.91167 0.97008 1.65313 1.47208 1.00209 1.09931 1.23191 0.93317 0.95291 0.97726 1.22850 1.00175 0.92580 1.00350 1.19257 0.88897 0.86712 0.84266 1.86084 1.70413 1.26209 1.57718 1.21620 0.93222 0.93888 1.46941 0.92038 1.25011 0.97506 0.96929 0.94152 1.69692 1.31130 1.05083 1.48275 0.86531 0.84512 0.77537 0.78669 1.20138 1.21332 1.20208 1.22972 0.99290 0.96200 0.88975 0.92587 0.92691 0.92830 0.91491 0.91818 0.87531 0.87595 0.91738 0.90206 0.91348 0.95275 0.95459 0.91689 0.93181 0.90660 0.76783 0.92463 0.90587 0.95239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.89 37.15 0.37 -0.86 16 2 C -0.09 -0.84 6.38 -27.88 -0.18 -1.02 16 3 C -0.17 -1.86 9.12 -36.02 -0.33 -2.19 16 4 C -0.15 -1.73 9.12 -36.02 -0.33 -2.05 16 5 C -0.09 -1.19 5.77 -27.88 -0.16 -1.35 16 6 C 0.05 0.81 4.81 -3.82 -0.02 0.79 16 7 N -0.50 -10.10 5.34 -229.83 -1.23 -11.33 16 8 C 0.03 0.66 5.93 -2.09 -0.01 0.64 16 9 C -0.12 -2.88 5.55 -25.35 -0.14 -3.02 16 10 C 0.25 6.36 1.05 -90.39 -0.10 6.26 16 11 O -0.60 -15.88 12.94 -35.23 -0.46 -16.34 16 12 C -0.52 -14.29 8.10 -34.44 -0.28 -14.57 16 13 H 0.06 1.70 7.53 -52.49 -0.40 1.31 16 14 C 0.07 1.76 5.02 -17.82 -0.09 1.67 16 15 N -0.90 -24.55 10.81 55.43 0.60 -23.95 16 16 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 C 0.05 1.20 5.74 -2.18 -0.01 1.19 16 21 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.55 7.79 -51.93 -0.40 0.15 16 26 H 0.11 1.15 7.84 -52.49 -0.41 0.74 16 27 H 0.11 1.16 7.84 -52.49 -0.41 0.74 16 28 H 0.06 0.91 7.12 -51.93 -0.37 0.54 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 31 H 0.03 0.47 7.77 -51.93 -0.40 0.07 16 32 H 0.03 0.52 7.75 -51.93 -0.40 0.12 16 33 H 0.06 1.21 7.86 -51.93 -0.41 0.80 16 34 H 0.05 1.20 7.98 -51.93 -0.41 0.78 16 35 H 0.07 1.95 7.23 -51.93 -0.38 1.58 16 36 H 0.38 10.25 7.32 45.56 0.33 10.59 16 37 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 38 H 0.08 1.71 7.67 -51.93 -0.40 1.31 16 39 H 0.03 0.65 7.94 -51.93 -0.41 0.24 16 LS Contribution 313.19 15.07 4.72 4.72 Total: -1.00 -27.80 313.19 -8.80 -36.61 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -6.14 Total: 8.63 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: -1.28 Total: -14.51 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: -0.63 Total: -35.27 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.46 Total: -16.34 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.80 -8.80 -36.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592150870.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.501 kcal (2) G-P(sol) polarization free energy of solvation -27.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds