Wall clock time and date at job start Sun Mar 29 2020 22:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46504 * 2 1 4 4 C 1.50695 * 109.47376 * 119.99891 * 2 1 3 5 5 N 1.27961 * 120.00134 * 0.02562 * 4 2 1 6 6 O 1.41595 * 119.99947 * 179.97438 * 5 4 2 7 7 C 1.42906 * 113.99633 * 180.02562 * 6 5 4 8 8 C 1.53006 * 109.46752 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.46623 * 179.97438 * 8 7 6 10 10 C 1.53004 * 117.49912 * 243.74399 * 9 8 7 11 11 C 1.53005 * 117.49441 * 175.08604 * 9 8 7 12 12 C 1.53003 * 109.46954 * 240.00255 * 2 1 3 13 13 C 1.50695 * 109.47045 * 59.99834 * 12 2 1 14 14 H 1.08001 * 120.00392 * 359.97438 * 13 12 2 15 15 C 1.37882 * 120.00026 * 180.02562 * 13 12 2 16 16 N 1.31513 * 119.99674 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00214 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47475 * 89.99658 * 17 15 13 19 19 H 1.48507 * 109.47040 * 209.99648 * 17 15 13 20 20 H 1.48503 * 109.47151 * 329.99251 * 17 15 13 21 21 H 1.09004 * 109.46980 * 299.99548 * 1 2 3 22 22 H 1.08995 * 109.47456 * 60.00306 * 1 2 3 23 23 H 1.09004 * 109.46870 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.46540 * 180.02562 * 3 2 1 25 25 H 1.08995 * 109.47280 * 299.99485 * 3 2 1 26 26 H 1.08991 * 109.47200 * 60.00842 * 3 2 1 27 27 H 1.07998 * 120.00133 * 180.02562 * 4 2 1 28 28 H 1.08993 * 109.47732 * 60.00083 * 7 6 5 29 29 H 1.09000 * 109.47141 * 299.99722 * 7 6 5 30 30 H 1.09000 * 109.47050 * 299.99753 * 8 7 6 31 31 H 1.09001 * 109.46801 * 59.99865 * 8 7 6 32 32 H 1.08998 * 115.55258 * 29.41891 * 9 8 7 33 33 H 1.08995 * 117.49607 * 0.02562 * 10 9 8 34 34 H 1.08997 * 117.49720 * 145.02846 * 10 9 8 35 35 H 1.09001 * 117.49764 * 214.98321 * 11 9 8 36 36 H 1.08998 * 117.49796 * 0.02562 * 11 9 8 37 37 H 1.08995 * 109.46700 * 179.97438 * 12 2 1 38 38 H 1.08996 * 109.46777 * 299.99569 * 12 2 1 39 39 H 0.97000 * 119.99906 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2304 5 7 1.2010 -1.1971 2.0725 6 8 1.6731 -1.8650 3.2283 7 6 0.6360 -2.3575 4.0793 8 6 1.2584 -3.0563 5.2898 9 6 0.1481 -3.5830 6.2012 10 6 0.0479 -2.9899 7.6080 11 6 0.5658 -4.4173 7.4138 12 6 2.0400 -0.7212 -1.2493 13 6 1.5376 -0.0108 -2.4797 14 1 0.9164 0.8671 -2.3806 15 6 1.8703 -0.4821 -3.7320 16 7 2.6263 -1.5514 -3.8527 17 14 1.2482 0.3989 -5.2571 18 1 2.2269 1.4399 -5.6614 19 1 1.0824 -0.5802 -6.3614 20 1 -0.0596 1.0373 -4.9612 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5137 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 3.1300 1.4426 -0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.0942 -0.8086 1.4015 28 1 0.0192 -3.0668 3.5274 29 1 0.0184 -1.5258 4.4182 30 1 1.8763 -3.8880 4.9513 31 1 1.8749 -2.3466 5.8416 32 1 -0.7822 -3.8525 5.7012 33 1 0.7728 -2.2242 7.8841 34 1 -0.9482 -2.8697 8.0337 35 1 -0.0899 -5.2354 7.7118 36 1 1.6316 -4.5905 7.5625 37 1 3.1300 -0.7208 -1.2495 38 1 1.6767 -1.7488 -1.2492 39 1 2.8607 -1.8827 -4.7337 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814247142.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:33 Heat of formation + Delta-G solvation = 9.739718 kcal Electronic energy + Delta-G solvation = -16530.852376 eV Core-core repulsion = 13861.479375 eV Total energy + Delta-G solvation = -2669.373001 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -38.16139 -37.54661 -36.31567 -33.06908 -31.91293 -29.89068 -27.05052 -26.41909 -24.10061 -23.24320 -22.60151 -21.47368 -20.61259 -17.77226 -16.94527 -16.25973 -16.00737 -15.40657 -14.80985 -14.64102 -14.14725 -13.51900 -13.36564 -12.88345 -12.81628 -12.08899 -12.00917 -11.79383 -11.53999 -11.43941 -11.11054 -10.99675 -10.85037 -10.81866 -10.61596 -10.53192 -10.26506 -10.14374 -9.95442 -9.52485 -9.35715 -8.95962 -8.81326 -8.36577 -6.00920 -4.02332 2.63005 3.04584 3.31974 3.38957 3.41529 3.55403 4.44875 4.51467 4.65953 4.68636 5.00264 5.21870 5.34451 5.36253 5.37790 5.45889 5.49774 5.61927 5.75200 5.82306 5.84699 5.92168 5.97947 6.00642 6.10413 6.35468 6.43959 6.61691 6.70152 6.78432 7.04119 7.07177 7.19382 7.61315 7.70943 7.97114 8.09524 8.37944 9.01887 9.60801 11.10688 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.052234 B = 0.003560 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.920958 B = 7863.574869 C = 8024.138113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.016 4.016 3 C -0.123 4.123 4 C 0.138 3.862 5 N -0.349 5.349 6 O -0.267 6.267 7 C 0.084 3.916 8 C -0.087 4.087 9 C -0.149 4.149 10 C -0.181 4.181 11 C -0.179 4.179 12 C 0.039 3.961 13 C -0.511 4.511 14 H 0.062 0.938 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.288 1.288 20 H -0.273 1.273 21 H 0.036 0.964 22 H 0.065 0.935 23 H 0.049 0.951 24 H 0.051 0.949 25 H 0.076 0.924 26 H 0.035 0.965 27 H 0.104 0.896 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.021 0.979 38 H 0.019 0.981 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.392 -1.135 17.385 17.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.018 4.018 3 C -0.181 4.181 4 C -0.076 4.076 5 N -0.096 5.096 6 O -0.278 6.278 7 C 0.007 3.993 8 C -0.126 4.126 9 C -0.168 4.168 10 C -0.218 4.218 11 C -0.216 4.216 12 C 0.001 3.999 13 C -0.549 4.549 14 H 0.080 0.920 15 C -0.145 4.145 16 N -0.534 5.534 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.214 1.214 20 H -0.198 1.198 21 H 0.055 0.945 22 H 0.084 0.916 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.095 0.905 26 H 0.054 0.946 27 H 0.121 0.879 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.125 0.875 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.039 0.961 38 H 0.038 0.962 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.033 -1.460 17.616 18.131 hybrid contribution 0.485 0.230 -0.830 0.988 sum -3.549 -1.230 16.786 17.201 Atomic orbital electron populations 1.21623 0.94025 1.01588 1.00385 1.19884 0.96472 0.94848 0.90585 1.21716 1.00679 0.94545 1.01205 1.26618 0.97573 0.90680 0.92718 1.76438 1.28090 1.09536 0.95561 1.89770 1.32017 1.73687 1.32286 1.22192 0.90429 0.97167 0.89506 1.21097 0.96906 1.00132 0.94443 1.22158 1.00565 1.04308 0.89724 1.23077 1.02678 0.96632 0.99410 1.22982 1.01859 0.94449 1.02313 1.19142 0.96488 0.95381 0.88928 1.21160 1.31322 1.12184 0.90252 0.91963 1.25008 0.95279 0.95047 0.99116 1.69967 1.36960 1.23003 1.23512 0.86612 0.79255 0.79377 0.82873 1.20710 1.21352 1.19831 0.94507 0.91586 0.93155 0.92979 0.90521 0.94575 0.87873 0.92907 0.93010 0.90743 0.91126 0.87464 0.88700 0.88826 0.88743 0.88708 0.96066 0.96223 0.93002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.32 7.45 37.16 0.28 -2.05 16 2 C -0.02 -0.33 0.75 -155.66 -0.12 -0.45 16 3 C -0.12 -2.21 8.20 37.16 0.30 -1.91 16 4 C 0.14 2.65 9.72 -13.89 -0.13 2.51 16 5 N -0.35 -6.75 10.03 32.65 0.33 -6.43 16 6 O -0.27 -4.81 11.35 -11.47 -0.13 -4.94 16 7 C 0.08 1.19 6.36 37.16 0.24 1.42 16 8 C -0.09 -0.97 5.87 -26.73 -0.16 -1.13 16 9 C -0.15 -1.39 5.73 -90.62 -0.52 -1.91 16 10 C -0.18 -1.47 10.18 -26.69 -0.27 -1.75 16 11 C -0.18 -1.43 10.25 -26.69 -0.27 -1.70 16 12 C 0.04 0.95 4.02 -27.88 -0.11 0.84 16 13 C -0.51 -13.51 7.65 -34.44 -0.26 -13.77 16 14 H 0.06 1.58 5.68 -52.49 -0.30 1.28 16 15 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -26.26 13.29 55.43 0.74 -25.52 16 17 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 21 H 0.04 0.65 8.06 -51.93 -0.42 0.23 16 22 H 0.07 1.32 6.62 -51.93 -0.34 0.97 16 23 H 0.05 1.02 8.06 -51.93 -0.42 0.60 16 24 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 25 H 0.08 1.43 6.62 -51.93 -0.34 1.09 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.77 7.87 -51.93 -0.41 0.36 16 32 H 0.11 0.97 8.08 -51.93 -0.42 0.55 16 33 H 0.09 0.75 8.03 -51.93 -0.42 0.34 16 34 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 323.97 15.07 4.88 4.88 Total: -1.00 -29.26 323.97 -7.19 -36.45 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -6.85 Total: -2.06 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: -1.13 Total: -18.41 kcal Atomic # 7 Polarization: -33.01 SS G_CDS: 1.06 Total: -31.95 kcal Atomic # 8 Polarization: -4.81 SS G_CDS: -0.13 Total: -4.94 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.26 -7.19 -36.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814247142.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.188 kcal (2) G-P(sol) polarization free energy of solvation -29.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds