Wall clock time and date at job start Sun Mar 29 2020 23:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53000 * 109.47162 * 2 1 4 4 C 1.52996 * 109.47146 * 120.00093 * 2 1 3 5 5 N 1.46498 * 109.47059 * 299.99645 * 4 2 1 6 6 C 1.34777 * 119.99828 * 179.72339 * 5 4 2 7 7 O 1.21283 * 120.00222 * 0.28168 * 6 5 4 8 8 C 1.50703 * 120.00290 * 180.27728 * 6 5 4 9 9 C 1.52990 * 109.47398 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.47398 * 180.02562 * 9 8 6 11 11 H 1.08001 * 119.99463 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00445 * 180.02562 * 10 9 8 13 13 N 1.31509 * 120.00506 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 119.99943 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.47483 * 89.99798 * 14 12 10 16 16 H 1.48502 * 109.47495 * 210.00312 * 14 12 10 17 17 H 1.48502 * 109.47376 * 329.99929 * 14 12 10 18 18 C 1.53003 * 109.46927 * 240.00208 * 2 1 3 19 19 C 1.52999 * 117.49833 * 128.74355 * 18 2 1 20 20 C 1.53005 * 117.49892 * 60.08254 * 18 2 1 21 21 H 1.09003 * 109.46863 * 299.99777 * 1 2 3 22 22 H 1.09001 * 109.47172 * 59.99859 * 1 2 3 23 23 H 1.09000 * 109.46753 * 180.02562 * 1 2 3 24 24 H 1.08990 * 109.47258 * 180.02562 * 3 2 1 25 25 H 1.09001 * 109.46739 * 300.00411 * 3 2 1 26 26 H 1.08999 * 109.47407 * 59.99680 * 3 2 1 27 27 H 1.09004 * 109.47066 * 179.97438 * 4 2 1 28 28 H 1.08994 * 109.46974 * 60.00060 * 4 2 1 29 29 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 30 30 H 1.08998 * 109.46954 * 300.00581 * 8 6 5 31 31 H 1.09002 * 109.46946 * 59.99717 * 8 6 5 32 32 H 1.08998 * 109.47508 * 300.00200 * 9 8 6 33 33 H 1.09011 * 109.47182 * 60.00188 * 9 8 6 34 34 H 0.97000 * 120.00920 * 179.97438 * 13 12 10 35 35 H 1.09000 * 115.54529 * 274.41717 * 18 2 1 36 36 H 1.08994 * 117.49780 * 359.97438 * 19 18 2 37 37 H 1.08998 * 117.49619 * 145.01919 * 19 18 2 38 38 H 1.08996 * 117.49650 * 214.98099 * 20 18 2 39 39 H 1.08996 * 117.49806 * 0.02562 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.5518 -0.0306 2.4454 6 6 1.8728 -0.4943 3.6694 7 8 2.5702 -1.4804 3.7807 8 6 1.3655 0.2124 4.9000 9 6 1.8714 -0.5117 6.1491 10 6 1.3635 0.1947 7.3796 11 1 0.7423 1.0726 7.2805 12 6 1.6926 -0.2791 8.6318 13 7 1.2490 0.3370 9.7056 14 14 2.7688 -1.7963 8.8032 15 1 4.1956 -1.3880 8.8552 16 1 2.4142 -2.5163 10.0527 17 1 2.5523 -2.6911 7.6380 18 6 2.0401 -0.7212 -1.2493 19 6 3.0763 0.0040 -2.1102 20 6 1.6373 -0.1483 -2.6097 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6768 1.9564 0.8899 27 1 3.1301 -0.7216 1.2490 28 1 1.6768 -1.7489 1.2492 29 1 0.9939 0.7579 2.3564 30 1 1.7283 1.2402 4.9042 31 1 0.2755 0.2120 4.8957 32 1 1.5089 -1.5396 6.1451 33 1 2.9615 -0.5108 6.1531 34 1 1.4803 0.0035 10.5867 35 1 2.1253 -1.8046 -1.1647 36 1 3.3944 0.9951 -1.7868 37 1 3.8431 -0.6023 -2.5923 38 1 1.4581 -0.8547 -3.4201 39 1 1.0095 0.7426 -2.6146 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887371881.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:10:47 Heat of formation + Delta-G solvation = -36.289106 kcal Electronic energy + Delta-G solvation = -17043.009468 eV Core-core repulsion = 14371.640507 eV Total energy + Delta-G solvation = -2671.368961 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.91850 -38.62737 -35.17390 -33.44369 -32.24986 -31.15565 -27.66150 -27.28055 -25.56840 -23.02244 -22.49057 -21.00618 -19.77606 -18.59687 -17.30825 -16.39706 -15.85253 -15.55339 -15.34042 -14.62623 -14.13208 -14.07085 -13.75619 -13.14624 -12.87617 -12.74814 -12.52300 -12.38710 -11.91468 -11.73306 -11.38766 -11.28154 -11.26945 -10.93542 -10.89603 -10.50494 -10.17291 -10.11582 -10.01395 -9.75835 -9.20053 -9.12756 -8.79000 -8.48551 -6.01036 -3.99617 3.19042 3.39768 3.43251 3.46267 3.57695 3.60906 4.35114 4.46225 4.53067 4.60067 4.76643 4.90551 4.93104 5.18987 5.34199 5.34568 5.40468 5.43057 5.54724 5.58242 5.64901 5.74312 5.76322 5.85792 5.87515 5.96661 6.07952 6.11614 6.13484 6.14657 6.69003 6.74151 7.39800 7.46860 7.79663 7.85272 8.52722 8.71920 9.02187 9.62216 11.11832 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.055273 B = 0.004126 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.455343 B = 6783.783934 C = 7018.481281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.045 4.045 3 C -0.147 4.147 4 C 0.132 3.868 5 N -0.740 5.740 6 C 0.509 3.491 7 O -0.542 6.542 8 C -0.123 4.123 9 C 0.001 3.999 10 C -0.524 4.524 11 H 0.072 0.928 12 C 0.068 3.932 13 N -0.904 5.904 14 Si 0.878 3.122 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.261 1.261 18 C -0.141 4.141 19 C -0.184 4.184 20 C -0.177 4.177 21 H 0.058 0.942 22 H 0.057 0.943 23 H 0.058 0.942 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.397 0.603 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.023 0.977 33 H 0.019 0.981 34 H 0.263 0.737 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.386 1.343 -24.591 24.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.045 4.045 3 C -0.204 4.204 4 C 0.008 3.992 5 N -0.395 5.395 6 C 0.297 3.703 7 O -0.418 6.418 8 C -0.162 4.162 9 C -0.036 4.036 10 C -0.562 4.562 11 H 0.090 0.910 12 C -0.133 4.133 13 N -0.543 5.543 14 Si 0.705 3.295 15 H -0.202 1.202 16 H -0.215 1.215 17 H -0.185 1.185 18 C -0.159 4.159 19 C -0.221 4.221 20 C -0.214 4.214 21 H 0.077 0.923 22 H 0.076 0.924 23 H 0.077 0.923 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.232 0.768 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.042 0.958 33 H 0.037 0.963 34 H 0.073 0.927 35 H 0.124 0.876 36 H 0.119 0.881 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.130 0.609 -24.303 24.311 hybrid contribution 0.287 -0.390 0.107 0.496 sum 0.417 0.219 -24.196 24.200 Atomic orbital electron populations 1.21862 0.93771 1.02354 1.01781 1.20289 0.95972 0.95338 0.92928 1.22023 1.01541 0.94965 1.01857 1.21242 0.99060 0.95808 0.83056 1.46218 1.55117 1.32475 1.05641 1.21514 0.79517 0.84509 0.84761 1.90649 1.37710 1.26566 1.86924 1.21660 1.01812 1.00460 0.92312 1.19363 0.96654 0.96193 0.91436 1.21125 1.32347 1.13563 0.89189 0.90959 1.24971 0.95640 0.96867 0.95792 1.69909 1.45876 1.40661 0.97893 0.86793 0.81073 0.83961 0.77710 1.20248 1.21457 1.18525 1.22220 1.03802 0.99105 0.90789 1.23167 0.92434 1.02628 1.03848 1.22935 0.98219 1.03213 0.97013 0.92321 0.92379 0.92275 0.91925 0.92382 0.92221 0.91741 0.91848 0.76796 0.89724 0.89686 0.95841 0.96293 0.92738 0.87643 0.88058 0.89065 0.89012 0.88785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 8.14 37.16 0.30 -0.85 16 2 C -0.04 -0.39 0.64 -154.50 -0.10 -0.49 16 3 C -0.15 -1.19 6.90 37.16 0.26 -0.93 16 4 C 0.13 1.60 4.55 -4.04 -0.02 1.58 16 5 N -0.74 -9.99 4.96 -60.30 -0.30 -10.29 16 6 C 0.51 9.44 7.83 -10.98 -0.09 9.35 16 7 O -0.54 -12.32 15.98 5.55 0.09 -12.23 16 8 C -0.12 -2.41 5.64 -27.89 -0.16 -2.57 16 9 C 0.00 0.04 3.33 -27.89 -0.09 -0.06 16 10 C -0.52 -15.18 9.66 -34.44 -0.33 -15.51 16 11 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 12 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 13 N -0.90 -28.27 13.96 55.43 0.77 -27.50 16 14 Si 0.88 22.86 27.47 -169.99 -4.67 18.19 16 15 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 16 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 17 H -0.26 -6.78 6.54 56.52 0.37 -6.41 16 18 C -0.14 -1.15 5.15 -90.62 -0.47 -1.61 16 19 C -0.18 -1.36 9.57 -26.69 -0.26 -1.62 16 20 C -0.18 -1.23 9.39 -26.69 -0.25 -1.48 16 21 H 0.06 0.48 6.86 -51.93 -0.36 0.13 16 22 H 0.06 0.42 7.29 -51.93 -0.38 0.04 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.53 6.97 -51.93 -0.36 0.17 16 25 H 0.06 0.41 7.07 -51.93 -0.37 0.04 16 26 H 0.06 0.49 6.86 -51.93 -0.36 0.13 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.40 4.30 6.16 -40.82 -0.25 4.05 16 30 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 31 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 32 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 33 H 0.02 0.49 7.53 -51.92 -0.39 0.10 16 34 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 35 H 0.11 0.89 8.11 -51.93 -0.42 0.47 16 36 H 0.10 0.73 5.85 -51.93 -0.30 0.43 16 37 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.09 0.62 7.07 -51.93 -0.37 0.25 16 LS Contribution 309.60 15.07 4.67 4.67 Total: -1.00 -33.54 309.60 -7.21 -40.75 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -6.47 Total: -1.33 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -1.30 Total: -12.24 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.47 Total: -37.79 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.09 Total: -12.23 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -4.67 Total: 18.19 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.54 -7.21 -40.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887371881.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.456 kcal (2) G-P(sol) polarization free energy of solvation -33.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds