Wall clock time and date at job start Sun Mar 29 2020 22:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 120.00215 * 2 1 4 4 C 1.52997 * 109.47466 * 124.99708 * 3 2 1 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.46886 * 180.02562 * 5 4 3 7 7 O 1.42898 * 109.47145 * 179.97438 * 6 5 4 8 8 C 1.42902 * 114.00186 * 179.97438 * 7 6 5 9 9 H 1.09006 * 110.63877 * 333.13926 * 8 7 6 10 10 C 1.55162 * 110.72066 * 209.99976 * 8 7 6 11 11 C 1.54913 * 101.58015 * 206.13517 * 10 8 7 12 12 N 1.47419 * 104.83219 * 37.00548 * 11 10 8 13 13 C 1.36941 * 125.64718 * 155.83460 * 12 11 10 14 14 H 1.08002 * 120.00298 * 180.02562 * 13 12 11 15 15 C 1.38814 * 119.99895 * 0.02792 * 13 12 11 16 16 N 1.31615 * 119.99963 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99791 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47279 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46821 * 120.00109 * 17 15 13 20 20 H 1.48500 * 109.47252 * 239.99783 * 17 15 13 21 21 C 1.47023 * 108.70668 * 335.87545 * 12 11 10 22 22 H 1.08006 * 119.99938 * 0.02562 * 1 2 3 23 23 H 1.07999 * 120.00549 * 179.97438 * 1 2 3 24 24 H 1.07997 * 119.99841 * 179.97438 * 2 1 3 25 25 H 1.09002 * 109.47120 * 4.99460 * 3 2 1 26 26 H 1.08998 * 109.46862 * 245.00263 * 3 2 1 27 27 H 1.09002 * 109.47153 * 59.99773 * 4 3 2 28 28 H 1.09001 * 109.46832 * 299.99964 * 4 3 2 29 29 H 1.09001 * 109.47194 * 299.99650 * 5 4 3 30 30 H 1.08992 * 109.47399 * 59.99823 * 5 4 3 31 31 H 1.09001 * 109.47109 * 299.99380 * 6 5 4 32 32 H 1.09002 * 109.47508 * 59.99571 * 6 5 4 33 33 H 1.09001 * 110.99802 * 324.20441 * 10 8 7 34 34 H 1.08993 * 111.00294 * 88.06064 * 10 8 7 35 35 H 1.08996 * 110.36687 * 155.84988 * 11 10 8 36 36 H 1.09005 * 110.35992 * 278.17057 * 11 10 8 37 37 H 0.96996 * 119.99885 * 180.02562 * 16 15 13 38 38 H 1.09004 * 109.87964 * 241.64007 * 21 12 11 39 39 H 1.08997 * 109.88594 * 120.47570 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.7996 2.6584 1.1819 6 6 4.7715 2.6861 2.3632 7 8 5.4860 3.9237 2.3632 8 6 6.4251 4.0527 3.4326 9 1 6.1188 3.4501 4.2877 10 6 6.5913 5.5404 3.8407 11 6 8.0225 5.5422 4.4336 12 7 8.7832 4.6060 3.5862 13 6 10.1408 4.6145 3.4072 14 1 10.6051 3.8830 2.7624 15 6 10.9203 5.5633 4.0546 16 7 10.3546 6.4544 4.8409 17 14 12.7723 5.5743 3.8110 18 1 13.1565 4.4776 2.8865 19 1 13.1875 6.8773 3.2320 20 1 13.4450 5.3775 5.1201 21 6 7.8428 3.6623 2.9643 22 1 -0.5400 0.9354 -0.0004 23 1 -0.5401 -0.9352 -0.0004 24 1 1.8500 -0.9353 0.0004 25 1 1.3586 2.1316 0.0895 26 1 2.6213 1.4025 -0.9314 27 1 3.7399 0.5065 1.0922 28 1 2.4772 1.2357 2.1130 29 1 4.3574 2.7563 0.2506 30 1 3.0944 3.4846 1.2716 31 1 4.2141 2.5881 3.2947 32 1 5.4767 1.8598 2.2731 33 1 6.5281 6.1936 2.9704 34 1 5.8560 5.8233 4.5939 35 1 8.4548 6.5412 4.3781 36 1 8.0058 5.1919 5.4657 37 1 10.8993 7.1175 5.2929 38 1 8.0720 2.6458 3.2841 39 1 7.9079 3.7352 1.8788 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224334966.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:19 Heat of formation + Delta-G solvation = -36.956782 kcal Electronic energy + Delta-G solvation = -16653.660885 eV Core-core repulsion = 13982.262971 eV Total energy + Delta-G solvation = -2671.397914 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.93926 -37.95191 -36.86744 -34.40580 -33.52904 -31.13178 -29.40828 -28.50641 -26.36123 -24.37671 -22.30540 -22.03232 -21.55753 -20.57598 -18.98458 -17.91496 -16.97761 -16.76617 -16.29722 -15.85433 -15.67616 -15.05235 -14.85316 -14.31727 -14.25987 -13.65688 -13.51506 -13.38229 -12.98466 -12.93332 -12.72569 -12.49755 -12.24479 -12.16537 -11.98567 -11.88453 -11.74869 -11.61746 -11.46382 -11.31551 -10.78396 -10.44532 -10.17405 -8.93385 -7.80180 -5.25734 1.43684 1.46246 1.47864 1.58385 2.45913 2.68080 3.30386 3.69276 3.82345 3.93627 3.99235 4.07759 4.13973 4.18537 4.29203 4.47763 4.51846 4.57177 4.64413 4.72057 4.80132 4.87845 4.93371 4.96637 5.01959 5.04293 5.10242 5.17485 5.34251 5.42573 5.43546 5.58798 5.75918 5.79589 5.93281 6.26244 6.37606 7.07533 7.73523 8.37435 9.22331 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.062154 B = 0.003450 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.384391 B = 8114.494836 C = 8428.742177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.162 4.162 3 C -0.094 4.094 4 C -0.105 4.105 5 C -0.112 4.112 6 C 0.052 3.948 7 O -0.392 6.392 8 C 0.092 3.908 9 H 0.083 0.917 10 C -0.127 4.127 11 C 0.154 3.846 12 N -0.626 5.626 13 C -0.243 4.243 14 H 0.080 0.920 15 C -0.068 4.068 16 N -0.950 5.950 17 Si 0.985 3.015 18 H -0.267 1.267 19 H -0.289 1.289 20 H -0.289 1.289 21 C 0.114 3.886 22 H 0.098 0.902 23 H 0.105 0.895 24 H 0.113 0.887 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.048 0.952 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.078 0.922 36 H -0.003 1.003 37 H 0.249 0.751 38 H 0.026 0.974 39 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.460 -10.453 -6.645 21.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.180 4.180 3 C -0.131 4.131 4 C -0.143 4.143 5 C -0.150 4.150 6 C -0.024 4.024 7 O -0.311 6.311 8 C 0.034 3.966 9 H 0.101 0.899 10 C -0.165 4.165 11 C 0.029 3.971 12 N -0.353 5.353 13 C -0.371 4.371 14 H 0.098 0.902 15 C -0.260 4.260 16 N -0.599 5.599 17 Si 0.813 3.187 18 H -0.192 1.192 19 H -0.216 1.216 20 H -0.216 1.216 21 C -0.012 4.012 22 H 0.117 0.883 23 H 0.123 0.877 24 H 0.131 0.869 25 H 0.087 0.913 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.015 0.985 37 H 0.059 0.941 38 H 0.044 0.956 39 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -17.330 -10.228 -6.738 21.221 hybrid contribution 1.205 -0.068 0.252 1.233 sum -16.125 -10.296 -6.486 20.201 Atomic orbital electron populations 1.24020 0.96007 1.02447 1.01174 1.23079 0.96329 0.98711 0.99915 1.20750 0.98101 0.95598 0.98647 1.21390 0.97749 0.96189 0.98954 1.21499 0.97316 0.98905 0.97271 1.22778 0.94195 0.85753 0.99672 1.87893 1.54386 1.38564 1.50236 1.22959 0.87295 0.97465 0.88892 0.89904 1.22987 0.97776 0.94962 1.00808 1.21749 0.87981 0.96496 0.90857 1.44725 1.02576 1.34462 1.53569 1.19507 0.82085 1.12249 1.23284 0.90238 1.25698 1.03000 0.97898 0.99408 1.70036 1.34568 1.20526 1.34787 0.84912 0.79107 0.77466 0.77227 1.19173 1.21600 1.21597 1.21839 0.90429 0.92758 0.96144 0.88346 0.87687 0.86915 0.91282 0.90799 0.91313 0.91303 0.91743 0.91192 0.92260 0.93363 0.91896 0.88992 0.90441 0.98513 0.94104 0.95572 0.95750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.54 14.32 67.78 0.97 -1.57 16 2 C -0.16 -2.23 9.52 25.65 0.24 -1.99 16 3 C -0.09 -1.35 5.66 29.85 0.17 -1.19 16 4 C -0.11 -1.66 5.20 30.59 0.16 -1.50 16 5 C -0.11 -2.28 5.58 30.59 0.17 -2.11 16 6 C 0.05 1.30 5.77 71.98 0.42 1.72 16 7 O -0.39 -13.20 10.07 -148.98 -1.50 -14.70 16 8 C 0.09 3.42 3.45 31.78 0.11 3.53 16 9 H 0.08 2.74 7.82 -2.38 -0.02 2.72 16 10 C -0.13 -5.08 6.81 31.99 0.22 -4.86 16 11 C 0.15 7.89 5.89 86.86 0.51 8.41 16 12 N -0.63 -34.08 3.39 -691.99 -2.35 -36.43 16 13 C -0.24 -14.14 10.27 84.03 0.86 -13.27 16 14 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 15 C -0.07 -3.93 5.49 84.86 0.47 -3.46 16 16 N -0.95 -57.55 10.09 21.65 0.22 -57.34 16 17 Si 0.99 46.41 29.55 68.60 2.03 48.44 16 18 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 19 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 20 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 21 C 0.11 5.10 7.02 86.73 0.61 5.71 16 22 H 0.10 1.17 7.84 -2.91 -0.02 1.15 16 23 H 0.10 1.10 8.06 -2.91 -0.02 1.07 16 24 H 0.11 1.40 8.06 -2.91 -0.02 1.38 16 25 H 0.07 0.97 7.79 -2.39 -0.02 0.95 16 26 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.06 1.31 8.11 -2.39 -0.02 1.29 16 32 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 35 H 0.08 4.49 5.87 -2.39 -0.01 4.47 16 36 H 0.00 -0.17 8.14 -2.38 -0.02 -0.19 16 37 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 38 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.02 1.13 8.06 -2.39 -0.02 1.11 16 Total: -1.00 -65.72 318.57 4.28 -61.45 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: 0.97 Total: 9.17 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: 4.91 Total: -10.59 kcal Atomic # 7 Polarization: -91.64 SS G_CDS: -2.13 Total: -93.77 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -1.50 Total: -14.70 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -65.72 4.28 -61.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224334966.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.490 kcal (2) G-P(sol) polarization free energy of solvation -65.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds