Wall clock time and date at job start Sun Mar 29 2020 22:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46894 * 2 1 4 4 H 1.09000 * 109.47140 * 304.99571 * 3 2 1 5 5 C 1.50706 * 109.47103 * 184.99525 * 3 2 1 6 6 H 1.07995 * 120.00167 * 239.72222 * 5 3 2 7 7 C 1.37879 * 119.99394 * 59.99920 * 5 3 2 8 8 N 1.31514 * 120.00338 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99424 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47487 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47233 * 120.00158 * 9 7 5 12 12 H 1.48508 * 109.46883 * 239.99963 * 9 7 5 13 13 N 1.46902 * 109.47489 * 64.99980 * 3 2 1 14 14 C 1.47572 * 110.99801 * 276.09435 * 13 3 2 15 15 C 1.52984 * 87.81032 * 221.67801 * 14 13 3 16 16 C 1.47566 * 111.00250 * 179.97438 * 13 3 2 17 17 C 1.52630 * 113.99970 * 139.32538 * 15 14 13 18 18 C 1.53356 * 108.93306 * 186.37706 * 17 15 14 19 19 C 1.53153 * 108.94367 * 305.38838 * 18 17 15 20 20 C 1.53049 * 109.42997 * 58.75445 * 19 18 17 21 21 O 1.42371 * 114.18902 * 271.84026 * 15 14 13 22 22 H 1.08993 * 109.47122 * 60.00537 * 1 2 3 23 23 H 1.09004 * 109.47017 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47867 * 299.99927 * 1 2 3 25 25 H 1.08994 * 109.47407 * 239.99489 * 2 1 3 26 26 H 1.09001 * 109.46995 * 119.99751 * 2 1 3 27 27 H 0.96996 * 119.99730 * 179.97438 * 8 7 5 28 28 H 1.09003 * 113.49537 * 336.41104 * 14 13 3 29 29 H 1.08999 * 113.50103 * 106.93843 * 14 13 3 30 30 H 1.09003 * 113.49579 * 253.04845 * 16 13 3 31 31 H 1.08999 * 113.49729 * 23.51463 * 16 13 3 32 32 H 1.08996 * 109.56473 * 306.21484 * 17 15 14 33 33 H 1.09000 * 109.56394 * 66.54577 * 17 15 14 34 34 H 1.08996 * 109.55629 * 185.54542 * 18 17 15 35 35 H 1.09002 * 109.64488 * 65.27821 * 18 17 15 36 36 H 1.09004 * 109.48038 * 298.76501 * 19 18 17 37 37 H 1.09009 * 109.47751 * 178.74405 * 19 18 17 38 38 H 1.09000 * 109.47660 * 180.55686 * 20 19 18 39 39 H 1.09003 * 109.47481 * 60.53492 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1237 6 1 4.1469 1.8929 0.6502 7 6 4.1432 0.8784 -1.2279 8 7 3.4062 0.3374 -2.1732 9 14 6.0049 0.8800 -1.3809 10 1 6.5987 1.5453 -0.1935 11 1 6.4962 -0.5190 -1.4623 12 1 6.4000 1.6157 -2.6090 13 7 1.6513 2.0993 1.2552 14 6 0.2754 2.6264 1.1723 15 6 0.7746 3.8795 1.8942 16 6 2.1278 3.4955 1.2911 17 6 0.1989 5.1825 1.3462 18 6 0.8911 6.3626 2.0390 19 6 0.7536 6.1990 3.5556 20 6 1.3846 4.8720 3.9838 21 8 0.7246 3.7934 3.3144 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3635 0.5138 0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.8293 -0.0604 -2.9501 28 1 -0.0565 2.8162 0.1515 29 1 -0.4465 2.0501 1.7509 30 1 2.9663 3.6512 1.9700 31 1 2.3008 3.9212 0.3027 32 1 0.3746 5.2359 0.2719 33 1 -0.8722 5.2202 1.5447 34 1 0.4204 7.2952 1.7284 35 1 1.9468 6.3786 1.7680 36 1 -0.3019 6.2041 3.8275 37 1 1.2623 7.0221 4.0576 38 1 1.2783 4.7502 5.0618 39 1 2.4422 4.8707 3.7203 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166312.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:33 Heat of formation + Delta-G solvation = -17.786134 kcal Electronic energy + Delta-G solvation = -18347.145587 eV Core-core repulsion = 15676.578975 eV Total energy + Delta-G solvation = -2670.566612 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.44702 -37.29508 -33.83369 -33.50859 -31.54790 -29.93924 -27.55027 -25.30487 -24.73235 -23.79535 -22.49858 -20.71101 -19.32215 -18.66645 -16.52312 -15.86772 -15.75514 -15.04200 -14.39961 -14.37399 -13.95786 -13.81726 -13.22430 -12.79056 -12.64211 -12.34604 -12.09943 -11.68930 -11.64931 -11.35655 -11.12833 -10.94857 -10.89433 -10.75834 -10.55267 -10.50234 -10.04644 -9.81979 -9.59411 -9.24044 -8.87209 -8.72701 -8.43702 -7.65155 -6.02215 -4.07551 3.28148 3.36293 3.41014 3.94525 4.40320 4.76601 4.88545 4.93150 5.01016 5.17358 5.26152 5.29441 5.54375 5.60155 5.77584 5.87573 5.92853 6.00588 6.08603 6.13540 6.18106 6.23286 6.29286 6.38267 6.40364 6.45047 6.54587 6.62269 6.80890 7.05037 7.14559 7.49487 7.56383 7.66681 7.82281 8.10726 8.33487 8.49766 8.99253 9.57421 11.03786 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.027201 B = 0.007482 C = 0.006468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.141405 B = 3741.472457 C = 4328.279271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.109 4.109 3 C 0.184 3.816 4 H 0.007 0.993 5 C -0.506 4.506 6 H 0.060 0.940 7 C 0.060 3.940 8 N -0.891 5.891 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.285 1.285 13 N -0.455 5.455 14 C 0.016 3.984 15 C 0.076 3.924 16 C 0.003 3.997 17 C -0.133 4.133 18 C -0.120 4.120 19 C -0.154 4.154 20 C 0.059 3.941 21 O -0.344 6.344 22 H 0.038 0.962 23 H 0.031 0.969 24 H 0.048 0.952 25 H 0.093 0.907 26 H 0.040 0.960 27 H 0.260 0.740 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.885 9.787 7.036 13.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.147 4.147 3 C 0.077 3.923 4 H 0.024 0.976 5 C -0.544 4.544 6 H 0.078 0.922 7 C -0.141 4.141 8 N -0.530 5.530 9 Si 0.722 3.278 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.178 5.178 14 C -0.113 4.113 15 C 0.036 3.964 16 C -0.127 4.127 17 C -0.171 4.171 18 C -0.158 4.158 19 C -0.192 4.192 20 C -0.017 4.017 21 O -0.263 6.263 22 H 0.057 0.943 23 H 0.050 0.950 24 H 0.067 0.933 25 H 0.112 0.888 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.107 0.893 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.741 9.019 7.452 13.032 hybrid contribution 0.988 0.640 -1.079 1.597 sum -4.753 9.659 6.373 12.510 Atomic orbital electron populations 1.22043 0.99586 0.99353 1.00214 1.21500 0.91484 0.99299 1.02444 1.19842 0.95680 0.91930 0.84870 0.97572 1.21161 0.90925 1.37329 1.05017 0.92159 1.24928 0.98220 0.95286 0.95679 1.69894 1.34733 1.38843 1.09521 0.86495 0.85640 0.77767 0.77859 1.19783 1.20950 1.21136 1.68988 1.01493 1.11036 1.36283 1.23897 0.96224 0.93008 0.98198 1.22421 0.97822 0.94329 0.81836 1.23971 0.96335 0.92368 1.00010 1.21965 1.00299 0.94443 1.00395 1.21573 1.01259 0.98037 0.94921 1.22157 1.01883 0.98407 0.96747 1.22521 0.96163 0.86192 0.96863 1.87899 1.76345 1.45502 1.16522 0.94319 0.94955 0.93275 0.88836 0.94155 0.93012 0.91076 0.90069 0.91057 0.91075 0.90686 0.91392 0.91921 0.91582 0.91407 0.91349 0.89305 0.93072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 9.13 37.16 0.34 -2.86 16 2 C -0.11 -2.69 5.45 -26.73 -0.15 -2.84 16 3 C 0.18 4.66 1.37 -68.86 -0.09 4.56 16 4 H 0.01 0.18 7.52 -51.93 -0.39 -0.21 16 5 C -0.51 -14.00 8.08 -34.44 -0.28 -14.27 16 6 H 0.06 1.69 7.43 -52.49 -0.39 1.30 16 7 C 0.06 1.67 5.29 -17.82 -0.09 1.57 16 8 N -0.89 -25.36 11.29 55.43 0.63 -24.73 16 9 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 N -0.46 -10.20 6.10 -237.80 -1.45 -11.65 16 14 C 0.02 0.30 4.96 -7.25 -0.04 0.26 16 15 C 0.08 1.30 1.17 -90.80 -0.11 1.19 16 16 C 0.00 0.05 5.81 -7.23 -0.04 0.01 16 17 C -0.13 -1.83 5.31 -26.74 -0.14 -1.97 16 18 C -0.12 -1.42 6.00 -26.47 -0.16 -1.58 16 19 C -0.15 -1.72 6.08 -26.63 -0.16 -1.88 16 20 C 0.06 0.79 6.76 37.18 0.25 1.04 16 21 O -0.34 -5.93 10.55 -35.23 -0.37 -6.31 16 22 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.05 0.96 5.10 -51.93 -0.26 0.69 16 25 H 0.09 2.55 5.95 -51.93 -0.31 2.24 16 26 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.07 1.32 7.48 -51.93 -0.39 0.93 16 29 H 0.08 1.51 6.82 -51.93 -0.35 1.15 16 30 H 0.07 1.44 7.43 -51.93 -0.39 1.05 16 31 H 0.07 1.46 7.75 -51.93 -0.40 1.06 16 32 H 0.07 1.03 8.01 -51.93 -0.42 0.61 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 38 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.05 0.70 7.39 -51.93 -0.38 0.32 16 LS Contribution 296.68 15.07 4.47 4.47 Total: -1.00 -29.19 296.68 -9.04 -38.23 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -6.62 Total: 0.32 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: -0.67 Total: -16.75 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: -0.82 Total: -36.38 kcal Atomic # 8 Polarization: -5.93 SS G_CDS: -0.37 Total: -6.31 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.19 -9.04 -38.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166312.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.441 kcal (2) G-P(sol) polarization free energy of solvation -29.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds