Wall clock time and date at job start Sun Mar 29 2020 22:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.46645 * 2 1 4 4 C 1.53004 * 109.47141 * 119.99990 * 2 1 3 5 5 C 1.50696 * 109.47117 * 295.00165 * 4 2 1 6 6 H 1.07999 * 120.00363 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99846 * 180.02562 * 5 4 2 8 8 N 1.31517 * 120.00065 * 359.71826 * 7 5 4 9 9 Si 1.86796 * 120.00021 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47386 * 179.71886 * 9 7 5 11 11 H 1.48500 * 109.47313 * 299.72540 * 9 7 5 12 12 H 1.48508 * 109.47086 * 59.72266 * 9 7 5 13 13 C 1.52999 * 109.46896 * 239.99919 * 2 1 3 14 14 N 1.46901 * 109.47099 * 174.79831 * 13 2 1 15 15 C 1.46854 * 110.99936 * 288.32341 * 14 13 2 16 16 C 1.53035 * 109.52180 * 174.15757 * 15 14 13 17 17 C 1.53122 * 109.27674 * 59.18032 * 16 15 14 18 18 C 1.53006 * 109.52066 * 182.43685 * 17 16 15 19 19 C 1.52998 * 109.52378 * 62.25034 * 17 16 15 20 20 C 1.53111 * 109.16030 * 302.34293 * 17 16 15 21 21 C 1.46844 * 111.00301 * 164.11296 * 14 13 2 22 22 H 1.08996 * 109.46865 * 65.41173 * 1 2 3 23 23 H 1.09005 * 109.47015 * 185.41336 * 1 2 3 24 24 H 1.08996 * 109.47192 * 305.40690 * 1 2 3 25 25 H 1.08996 * 109.47012 * 174.99312 * 4 2 1 26 26 H 1.09003 * 109.46967 * 55.00036 * 4 2 1 27 27 H 0.96998 * 119.99362 * 0.27974 * 8 7 5 28 28 H 1.08998 * 109.47677 * 294.79739 * 13 2 1 29 29 H 1.08999 * 109.47197 * 54.79759 * 13 2 1 30 30 H 1.08996 * 109.46077 * 294.17554 * 15 14 13 31 31 H 1.08997 * 109.46261 * 54.14249 * 15 14 13 32 32 H 1.08993 * 109.50662 * 299.23921 * 16 15 14 33 33 H 1.09001 * 109.53065 * 179.13907 * 16 15 14 34 34 H 1.08998 * 109.46775 * 179.68043 * 18 17 16 35 35 H 1.08997 * 109.47277 * 299.68176 * 18 17 16 36 36 H 1.09002 * 109.46900 * 59.68529 * 18 17 16 37 37 H 1.08998 * 109.46993 * 300.31414 * 19 17 16 38 38 H 1.09000 * 109.47511 * 60.31080 * 19 17 16 39 39 H 1.08996 * 109.47389 * 180.31399 * 19 17 16 40 40 H 1.08996 * 109.50400 * 297.71044 * 20 17 16 41 41 H 1.09001 * 109.53704 * 177.61536 * 20 17 16 42 42 H 1.08998 * 109.46367 * 305.85918 * 21 14 13 43 43 H 1.09007 * 109.46086 * 65.83362 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 1.6414 0.0570 2.4766 6 1 1.0807 0.9745 2.3757 7 6 1.9933 -0.4018 3.7283 8 7 2.6722 -1.5215 3.8514 9 14 1.4998 0.5632 5.2496 10 1 1.9893 -0.1401 6.4624 11 1 2.0973 1.9214 5.1898 12 1 0.0200 0.6756 5.3060 13 6 2.0400 -0.7213 -1.2492 14 7 3.5036 -0.6135 -1.3137 15 6 3.9162 0.7546 -1.6524 16 6 5.4402 0.8649 -1.5680 17 6 6.0739 -0.1346 -2.5397 18 6 7.5977 -0.0720 -2.4160 19 6 5.6612 0.2124 -3.9715 20 6 5.5901 -1.5459 -2.1954 21 6 4.0618 -1.5864 -2.2615 22 1 -0.3633 0.4276 -0.9345 23 1 -0.3633 -1.0231 0.0970 24 1 -0.3633 0.5954 0.8376 25 1 3.1263 -0.7996 1.2055 26 1 1.6054 -1.7198 1.2952 27 1 2.9287 -2.0223 3.0613 28 1 1.7548 -1.7723 -1.2039 29 1 1.6026 -0.2641 -2.1368 30 1 3.5903 0.9920 -2.6650 31 1 3.4620 1.4549 -0.9514 32 1 5.7656 0.6410 -0.5522 33 1 5.7477 1.8762 -1.8342 34 1 8.0477 -0.7877 -3.1040 35 1 7.9411 0.9330 -2.6613 36 1 7.8897 -0.3167 -1.3948 37 1 4.5754 0.1700 -4.0570 38 1 6.0059 1.2172 -4.2157 39 1 6.1081 -0.5029 -4.6619 40 1 5.9179 -1.8077 -1.1894 41 1 6.0042 -2.2575 -2.9097 42 1 3.7133 -2.5863 -2.0031 43 1 3.7354 -1.3378 -3.2715 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602457708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:42 Heat of formation + Delta-G solvation = -35.250703 kcal Electronic energy + Delta-G solvation = -18287.996211 eV Core-core repulsion = 15752.505373 eV Total energy + Delta-G solvation = -2535.490838 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.60087 -36.35430 -33.87619 -31.97848 -30.68285 -28.29471 -27.36199 -26.45604 -24.66093 -23.10622 -22.60656 -21.36839 -18.97954 -18.17991 -16.59571 -15.72557 -14.86170 -14.62233 -14.44014 -14.08544 -13.70062 -13.63040 -13.37960 -13.05694 -12.33899 -11.98377 -11.92739 -11.88355 -11.78670 -11.59532 -11.35225 -11.20536 -10.96583 -10.91266 -10.69398 -10.50908 -10.31483 -10.06741 -10.04883 -9.89463 -9.65751 -9.23211 -8.31801 -8.15705 -7.75271 -6.18503 -3.84939 3.50914 3.53283 3.71665 4.25519 4.66695 4.73792 4.83588 4.87077 5.34320 5.37311 5.45633 5.49751 5.56633 5.58624 5.64206 5.72975 5.77340 5.79637 5.83103 5.87883 5.97355 6.01999 6.02457 6.09268 6.23059 6.24084 6.27260 6.34973 6.39331 6.40759 6.51715 6.58913 6.94376 7.01374 7.22870 7.54450 7.56615 7.71835 7.90617 8.43514 8.66340 9.08423 9.86114 11.22283 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.028002 B = 0.006011 C = 0.005481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.676440 B = 4657.299996 C = 5107.214560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.076 4.076 3 H 0.056 0.944 4 C 0.024 3.976 5 C -0.593 4.593 6 H 0.044 0.956 7 C 0.012 3.988 8 N -0.918 5.918 9 Si 1.064 2.936 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.290 1.290 13 C 0.064 3.936 14 N -0.526 5.526 15 C 0.057 3.943 16 C -0.105 4.105 17 C -0.067 4.067 18 C -0.139 4.139 19 C -0.143 4.143 20 C -0.105 4.105 21 C 0.056 3.944 22 H 0.028 0.972 23 H 0.044 0.956 24 H 0.061 0.939 25 H 0.024 0.976 26 H -0.002 1.002 27 H 0.269 0.731 28 H 0.065 0.935 29 H 0.018 0.982 30 H 0.026 0.974 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.051 0.949 39 H 0.050 0.950 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.070 0.930 43 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.301 2.653 -15.109 16.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.095 4.095 3 H 0.075 0.925 4 C -0.013 4.013 5 C -0.632 4.632 6 H 0.062 0.938 7 C -0.191 4.191 8 N -0.555 5.555 9 Si 0.893 3.107 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.217 1.217 13 C -0.064 4.064 14 N -0.250 5.250 15 C -0.071 4.071 16 C -0.143 4.143 17 C -0.067 4.067 18 C -0.196 4.196 19 C -0.200 4.200 20 C -0.142 4.142 21 C -0.072 4.072 22 H 0.047 0.953 23 H 0.063 0.937 24 H 0.080 0.920 25 H 0.042 0.958 26 H 0.016 0.984 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.036 0.964 30 H 0.044 0.956 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 5.576 2.548 -12.991 14.365 hybrid contribution -0.492 0.193 -2.494 2.550 sum 5.083 2.742 -15.486 16.528 Atomic orbital electron populations 1.21686 0.96382 1.01160 0.99653 1.21088 0.94176 0.99178 0.95067 0.92536 1.19150 0.96637 0.94413 0.91118 1.22107 1.38274 1.10093 0.92721 0.93760 1.25723 0.94971 0.97243 1.01136 1.70749 1.36430 1.14771 1.33574 0.83619 0.75894 0.75186 0.75961 1.20954 1.21676 1.21695 1.22253 0.86105 1.00676 0.97334 1.61790 1.10191 1.04120 1.48887 1.22103 0.95628 0.90905 0.98465 1.21638 0.94735 0.97902 1.00017 1.20583 0.95136 0.95898 0.95097 1.21841 0.94782 1.01227 1.01789 1.21956 1.01409 1.00860 0.95784 1.21629 0.94930 0.95553 1.02117 1.22086 0.95071 0.96548 0.93505 0.95274 0.93653 0.91966 0.95774 0.98380 0.92029 0.91649 0.96410 0.95630 0.90345 0.90752 0.92078 0.93023 0.92942 0.92444 0.92535 0.92988 0.93065 0.90872 0.92132 0.91199 0.95531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 8.91 37.16 0.33 -2.23 16 2 C -0.08 -1.61 2.35 -90.62 -0.21 -1.82 16 3 H 0.06 1.23 6.48 -51.93 -0.34 0.89 16 4 C 0.02 0.62 3.71 -27.88 -0.10 0.52 16 5 C -0.59 -17.18 8.47 -34.44 -0.29 -17.48 16 6 H 0.04 1.26 7.06 -52.49 -0.37 0.89 16 7 C 0.01 0.37 5.46 -17.82 -0.10 0.27 16 8 N -0.92 -29.00 13.65 55.43 0.76 -28.25 16 9 Si 1.06 26.08 29.90 -169.99 -5.08 21.00 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 C 0.06 1.14 4.36 -3.82 -0.02 1.13 16 14 N -0.53 -9.01 3.99 -234.67 -0.94 -9.95 16 15 C 0.06 0.88 5.06 -3.83 -0.02 0.86 16 16 C -0.11 -1.45 4.88 -26.65 -0.13 -1.58 16 17 C -0.07 -0.80 0.77 -154.39 -0.12 -0.92 16 18 C -0.14 -1.47 8.49 37.16 0.32 -1.16 16 19 C -0.14 -1.53 7.90 37.16 0.29 -1.24 16 20 C -0.10 -1.36 4.88 -26.66 -0.13 -1.49 16 21 C 0.06 0.81 5.20 -3.84 -0.02 0.79 16 22 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 23 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 24 H 0.06 1.30 7.12 -51.93 -0.37 0.93 16 25 H 0.02 0.68 7.50 -51.93 -0.39 0.29 16 26 H 0.00 -0.06 8.00 -51.93 -0.42 -0.47 16 27 H 0.27 8.54 7.22 -40.82 -0.29 8.24 16 28 H 0.07 1.18 7.87 -51.93 -0.41 0.77 16 29 H 0.02 0.29 8.06 -51.93 -0.42 -0.13 16 30 H 0.03 0.37 6.51 -51.93 -0.34 0.03 16 31 H 0.08 1.34 6.41 -51.93 -0.33 1.01 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.65 4.92 -51.93 -0.26 0.40 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.07 1.02 7.96 -51.93 -0.41 0.61 16 43 H 0.03 0.36 6.51 -51.93 -0.34 0.02 16 LS Contribution 320.49 15.07 4.83 4.83 Total: -1.00 -30.79 320.49 -8.76 -39.55 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -8.13 Total: -2.84 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: -0.20 Total: -24.34 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: -0.18 Total: -38.20 kcal Atomic # 14 Polarization: 26.08 SS G_CDS: -5.08 Total: 21.00 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.79 -8.76 -39.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602457708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.300 kcal (2) G-P(sol) polarization free energy of solvation -30.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds