Wall clock time and date at job start Sun Mar 29 2020 22:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.43207 * 119.99820 * 132.17409 * 3 2 1 5 5 N 3.51034 * 140.69095 * 132.16820 * 2 1 3 6 6 C 1.37810 * 120.00690 * 312.17055 * 3 2 1 7 7 C 1.46362 * 119.99462 * 353.71662 * 6 3 2 8 8 C 1.40180 * 120.25057 * 327.73558 * 7 6 3 9 9 C 1.37655 * 119.87239 * 180.27885 * 8 7 6 10 10 C 1.38693 * 120.38419 * 359.72110 * 9 8 7 11 11 C 1.38058 * 120.50795 * 0.02562 * 10 9 8 12 12 C 1.38767 * 120.11052 * 359.97438 * 11 10 9 13 13 O 1.35466 * 120.18703 * 180.02562 * 12 11 10 14 14 C 1.34753 * 117.00071 * 5.64090 * 13 12 11 15 15 H 1.08000 * 120.00051 * 354.90492 * 14 13 12 16 16 C 1.38752 * 119.99963 * 174.90886 * 14 13 12 17 17 N 1.31483 * 119.99742 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 119.99865 * 359.97438 * 16 14 13 19 19 H 1.48498 * 109.46861 * 90.00242 * 18 16 14 20 20 H 1.48504 * 109.46833 * 210.00080 * 18 16 14 21 21 H 1.48494 * 109.47181 * 330.00318 * 18 16 14 22 22 H 1.07994 * 120.00244 * 173.71161 * 6 3 2 23 23 H 1.08005 * 120.05870 * 0.02562 * 8 7 6 24 24 H 1.08002 * 119.80421 * 179.75052 * 9 8 7 25 25 H 1.07998 * 119.74682 * 180.02562 * 10 9 8 26 26 H 1.07997 * 119.94246 * 180.02562 * 11 10 9 27 27 H 0.97001 * 120.00067 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2836 0.8336 -0.9191 5 7 3.8521 1.4929 -1.6482 6 6 3.2575 -0.8002 0.8845 7 6 2.5327 -1.5461 1.9142 8 6 1.3597 -1.0202 2.4733 9 6 0.6873 -1.7257 3.4454 10 6 1.1603 -2.9578 3.8718 11 6 2.3110 -3.4930 3.3282 12 6 3.0053 -2.7996 2.3470 13 8 4.1343 -3.3236 1.8123 14 6 4.4676 -4.5732 2.1905 15 1 3.8914 -5.0789 2.9513 16 6 5.5510 -5.2103 1.6028 17 7 5.8759 -6.4298 1.9715 18 14 6.5472 -4.3358 0.2866 19 1 7.6548 -3.5799 0.9246 20 1 7.1094 -5.3368 -0.6555 21 1 5.6696 -3.3957 -0.4557 22 1 4.3326 -0.8775 0.8177 23 1 0.9865 -0.0614 2.1448 24 1 -0.2141 -1.3176 3.8782 25 1 0.6244 -3.5027 4.6348 26 1 2.6710 -4.4533 3.6667 27 1 6.6335 -6.8751 1.5609 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000022344421.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:28 Heat of formation + Delta-G solvation = 78.041499 kcal Electronic energy + Delta-G solvation = -15369.964108 eV Core-core repulsion = 12673.769714 eV Total energy + Delta-G solvation = -2696.194394 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 240.064 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.75781 -37.78861 -36.70450 -35.99030 -33.73293 -32.77286 -29.93533 -29.47892 -25.67925 -24.63913 -21.78821 -21.25942 -19.94471 -18.29017 -17.46528 -16.11826 -15.29838 -14.65698 -14.50459 -14.34142 -14.14795 -13.93874 -13.56477 -13.43456 -12.85115 -12.70193 -12.61366 -12.43956 -12.22801 -12.09212 -11.76674 -11.14025 -11.07275 -10.96262 -10.45326 -9.83258 -9.70219 -9.19735 -8.28449 -7.62023 -6.77687 -4.41557 0.43647 1.95574 2.03624 2.56167 2.90349 2.95836 3.03822 3.07518 3.17979 3.77796 3.89540 3.94735 4.18387 4.32891 4.48284 4.77629 5.08622 5.27101 5.42132 5.61403 5.73271 5.89344 6.08759 6.15896 6.35955 6.74880 6.80815 6.94963 7.22297 7.41946 7.53944 7.64642 7.71831 8.53531 9.08844 10.27436 Molecular weight = 240.06amu Principal moments of inertia in cm(-1) A = 0.018408 B = 0.009084 C = 0.006330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.714857 B = 3081.752875 C = 4422.588676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C 0.278 3.722 3 C -0.085 4.085 4 C 0.278 3.722 5 N -0.430 5.430 6 C 0.121 3.879 7 C -0.199 4.199 8 C -0.036 4.036 9 C -0.208 4.208 10 C -0.044 4.044 11 C -0.221 4.221 12 C 0.192 3.808 13 O -0.190 6.190 14 C -0.392 4.392 15 H 0.114 0.886 16 C 0.071 3.929 17 N -0.856 5.856 18 Si 0.901 3.099 19 H -0.268 1.268 20 H -0.277 1.277 21 H -0.253 1.253 22 H 0.152 0.848 23 H 0.121 0.879 24 H 0.115 0.885 25 H 0.117 0.883 26 H 0.141 0.859 27 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.768 6.298 2.091 7.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.104 5.104 2 C -0.036 4.036 3 C -0.094 4.094 4 C -0.037 4.037 5 N -0.106 5.106 6 C 0.094 3.906 7 C -0.201 4.201 8 C -0.055 4.055 9 C -0.227 4.227 10 C -0.063 4.063 11 C -0.240 4.240 12 C 0.135 3.865 13 O -0.091 6.091 14 C -0.466 4.466 15 H 0.131 0.869 16 C -0.137 4.137 17 N -0.490 5.490 18 Si 0.725 3.275 19 H -0.193 1.193 20 H -0.203 1.203 21 H -0.177 1.177 22 H 0.170 0.830 23 H 0.139 0.861 24 H 0.133 0.867 25 H 0.135 0.865 26 H 0.159 0.841 27 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.287 7.178 0.730 8.393 hybrid contribution 0.701 -0.280 -0.099 0.762 sum -3.586 6.898 0.631 7.800 Atomic orbital electron populations 1.81242 1.11494 1.08657 1.09052 1.24848 0.91785 0.93785 0.93189 1.13494 0.83947 1.08618 1.03296 1.24940 0.93600 0.92652 0.92528 1.81218 1.08211 1.10916 1.10257 1.22910 0.99929 0.82562 0.85174 1.17842 1.00337 0.96733 1.05200 1.21143 0.91267 0.98632 0.94413 1.20636 1.02376 0.97089 1.02568 1.21099 0.94276 0.94269 0.96627 1.21284 0.98447 1.03113 1.01120 1.19160 0.85089 0.91366 0.90851 1.83412 1.34090 1.31402 1.60215 1.20906 1.15308 0.87145 1.23227 0.86893 1.24559 0.96422 0.94939 0.97751 1.69588 1.27191 1.11230 1.41022 0.86236 0.80434 0.79933 0.80881 1.19275 1.20265 1.17711 0.83047 0.86089 0.86673 0.86478 0.84144 0.90295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.99 18.04 41.84 0.75 -6.23 15 2 C 0.28 4.16 11.67 -22.48 -0.26 3.90 15 3 C -0.09 -1.17 5.71 -106.20 -0.61 -1.78 15 4 C 0.28 4.00 15.33 -22.49 -0.34 3.66 15 5 N -0.43 -6.91 18.53 41.82 0.78 -6.13 15 6 C 0.12 1.71 9.19 -36.47 -0.34 1.37 15 7 C -0.20 -3.24 5.56 -104.94 -0.58 -3.82 15 8 C -0.04 -0.54 8.29 -39.07 -0.32 -0.87 15 9 C -0.21 -3.02 10.02 -39.63 -0.40 -3.42 15 10 C -0.04 -0.66 10.03 -39.48 -0.40 -1.06 15 11 C -0.22 -3.94 9.16 -39.45 -0.36 -4.30 15 12 C 0.19 3.63 6.67 -38.43 -0.26 3.38 15 13 O -0.19 -4.11 8.01 1.13 0.01 -4.10 15 14 C -0.39 -9.41 9.95 30.92 0.31 -9.10 15 15 H 0.11 2.77 5.44 -52.49 -0.29 2.49 15 16 C 0.07 1.73 5.50 -17.51 -0.10 1.63 15 17 N -0.86 -21.98 13.96 55.48 0.77 -21.20 15 18 Si 0.90 18.83 28.62 -169.99 -4.86 13.97 15 19 H -0.27 -5.49 7.11 56.52 0.40 -5.08 15 20 H -0.28 -5.73 7.11 56.52 0.40 -5.32 15 21 H -0.25 -5.19 7.11 56.52 0.40 -4.79 15 22 H 0.15 1.95 8.01 -52.49 -0.42 1.53 15 23 H 0.12 1.68 5.65 -52.48 -0.30 1.39 15 24 H 0.12 1.42 8.06 -52.49 -0.42 1.00 15 25 H 0.12 1.44 8.06 -52.49 -0.42 1.02 15 26 H 0.14 2.61 5.64 -52.49 -0.30 2.32 15 27 H 0.29 6.79 8.31 -40.82 -0.34 6.45 15 LS Contribution 264.71 15.07 3.99 3.99 Total: -1.00 -25.63 264.71 -3.50 -29.12 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: -1.28 Total: 0.99 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -3.66 Total: -10.41 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 2.30 Total: -33.57 kcal Atomic # 8 Polarization: -4.11 SS G_CDS: 0.01 Total: -4.10 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -4.86 Total: 13.97 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -25.63 -3.50 -29.12 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022344421.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.164 kcal (2) G-P(sol) polarization free energy of solvation -25.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds