Wall clock time and date at job start Sun Mar 29 2020 23:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35928 * 116.99822 * 2 1 4 4 C 1.38742 * 120.03887 * 359.72505 * 3 2 1 5 5 C 1.38127 * 119.94938 * 179.76536 * 4 3 2 6 6 C 1.38382 * 120.04682 * 0.51283 * 5 4 3 7 7 Cl 1.73601 * 119.95948 * 179.76252 * 6 5 4 8 8 C 1.38349 * 120.08305 * 359.74225 * 6 5 4 9 9 C 1.38160 * 120.04293 * 0.02562 * 8 6 5 10 10 C 1.50697 * 120.02101 * 179.97438 * 9 8 6 11 11 C 1.52996 * 109.47399 * 265.01859 * 10 9 8 12 12 C 1.50697 * 109.47399 * 179.97438 * 11 10 9 13 13 H 1.07993 * 119.99934 * 0.02562 * 12 11 10 14 14 C 1.37873 * 119.99949 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00172 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 120.00137 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47108 * 89.99529 * 16 14 12 18 18 H 1.48496 * 109.47109 * 210.00057 * 16 14 12 19 19 H 1.48501 * 109.46651 * 329.99934 * 16 14 12 20 20 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.47054 * 299.99733 * 1 2 3 22 22 H 1.09000 * 109.47187 * 59.99789 * 1 2 3 23 23 H 1.07991 * 120.02758 * 0.02562 * 4 3 2 24 24 H 1.08005 * 119.97727 * 180.22934 * 5 4 3 25 25 H 1.07998 * 119.97861 * 180.02562 * 8 6 5 26 26 H 1.09000 * 109.47579 * 25.02658 * 10 9 8 27 27 H 1.09007 * 109.47100 * 145.02180 * 10 9 8 28 28 H 1.09002 * 109.47561 * 300.00380 * 11 10 9 29 29 H 1.09007 * 109.46733 * 60.00096 * 11 10 9 30 30 H 0.97004 * 120.00401 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2912 2.3752 -0.0058 5 6 1.9202 3.6050 -0.0009 6 6 3.3021 3.6764 -0.0009 7 17 4.0903 5.2233 -0.0010 8 6 4.0565 2.5167 -0.0005 9 6 3.4312 1.2848 -0.0006 10 6 4.2534 0.0218 -0.0007 11 6 4.4266 -0.4738 -1.4377 12 6 5.2493 -1.7364 -1.4379 13 1 5.6120 -2.1447 -0.5063 14 6 5.5390 -2.3702 -2.6276 15 7 5.0978 -1.8727 -3.7622 16 14 6.5583 -3.9357 -2.6278 17 1 5.6595 -5.1116 -2.5069 18 1 7.3251 -4.0270 -3.8962 19 1 7.5006 -3.9129 -1.4803 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 0.2128 2.3199 -0.0098 24 1 1.3330 4.5114 -0.0016 25 1 5.1350 2.5745 -0.0001 26 1 5.2320 0.2253 0.4340 27 1 3.7459 -0.7421 0.5884 28 1 3.4480 -0.6774 -1.8724 29 1 4.9340 0.2902 -2.0269 30 1 5.3013 -2.3189 -4.5992 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041219086.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:17:01 Heat of formation + Delta-G solvation = -56.069206 kcal Electronic energy + Delta-G solvation = -14580.968182 eV Core-core repulsion = 11980.065805 eV Total energy + Delta-G solvation = -2600.902377 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.066 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.24882 -38.63223 -37.24345 -35.90928 -34.01041 -31.17014 -30.55687 -28.13177 -26.95288 -23.86164 -23.15773 -21.85185 -18.98052 -18.49104 -17.48566 -16.99845 -16.68143 -16.43568 -15.50143 -15.06193 -14.69683 -14.43263 -14.32184 -14.05897 -13.43015 -13.12498 -12.97283 -12.75386 -12.71157 -12.47109 -12.15528 -11.84625 -11.72408 -11.60649 -11.46252 -11.12968 -10.54321 -9.86632 -8.99692 -8.18082 -6.30012 0.24465 0.26831 1.19836 1.40506 1.42474 1.53648 2.41842 2.43307 2.63529 3.14513 3.74754 3.81237 4.15002 4.23719 4.39930 4.43197 4.53800 4.54852 4.74160 4.85305 4.90882 5.09261 5.20747 5.22026 5.28861 5.50674 5.64242 5.79732 5.86033 6.24398 6.47824 6.86329 7.38902 8.93645 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.024296 B = 0.006283 C = 0.005289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.180380 B = 4455.587187 C = 5293.017016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.333 6.333 3 C 0.121 3.879 4 C -0.191 4.191 5 C -0.076 4.076 6 C -0.077 4.077 7 Cl -0.070 7.070 8 C -0.083 4.083 9 C -0.112 4.112 10 C -0.054 4.054 11 C 0.043 3.957 12 C -0.542 4.542 13 H 0.061 0.939 14 C 0.000 4.000 15 N -0.934 5.934 16 Si 0.967 3.033 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.262 1.262 20 H 0.110 0.890 21 H 0.077 0.923 22 H 0.064 0.936 23 H 0.168 0.832 24 H 0.164 0.836 25 H 0.136 0.864 26 H 0.064 0.936 27 H 0.060 0.940 28 H -0.012 1.012 29 H -0.013 1.013 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.369 10.368 8.993 16.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.247 6.247 3 C 0.075 3.925 4 C -0.210 4.210 5 C -0.095 4.095 6 C -0.103 4.103 7 Cl -0.041 7.041 8 C -0.102 4.102 9 C -0.113 4.113 10 C -0.092 4.092 11 C 0.006 3.994 12 C -0.580 4.580 13 H 0.080 0.920 14 C -0.198 4.198 15 N -0.574 5.574 16 Si 0.791 3.209 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.186 1.186 20 H 0.129 0.871 21 H 0.096 0.904 22 H 0.083 0.917 23 H 0.185 0.815 24 H 0.181 0.819 25 H 0.154 0.846 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.007 0.993 29 H 0.005 0.995 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.224 10.282 8.820 16.389 hybrid contribution 0.476 -0.596 -0.469 0.896 sum -8.748 9.685 8.351 15.494 Atomic orbital electron populations 1.23388 0.76445 1.05441 1.02556 1.86193 1.23554 1.26805 1.88098 1.19157 0.91772 0.85450 0.96151 1.21443 1.01523 0.90495 1.07505 1.21070 0.91811 0.98872 0.97719 1.20808 0.93461 0.86214 1.09844 1.98334 1.80901 1.27641 1.97253 1.20849 1.00617 0.89756 0.98963 1.19566 0.91888 0.95905 1.03970 1.20353 0.97598 0.92777 0.98451 1.18835 0.94696 0.94459 0.91437 1.21687 1.33103 1.09999 0.93228 0.92049 1.25996 0.97326 1.01369 0.95108 1.70117 1.47302 1.41636 0.98387 0.85428 0.78700 0.78983 0.77819 1.19706 1.20689 1.18605 0.87142 0.90406 0.91720 0.81501 0.81879 0.84615 0.91723 0.92130 0.99327 0.99484 0.92806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 113.37 1.11 1.46 16 2 O -0.33 -11.56 9.63 -92.74 -0.89 -12.45 16 3 C 0.12 4.13 6.66 22.50 0.15 4.28 16 4 C -0.19 -4.93 9.04 22.36 0.20 -4.73 16 5 C -0.08 -1.87 9.82 22.28 0.22 -1.65 16 6 C -0.08 -2.21 6.32 22.33 0.14 -2.07 16 7 Cl -0.07 -1.77 28.95 -2.72 -0.08 -1.85 16 8 C -0.08 -2.84 9.46 22.28 0.21 -2.63 16 9 C -0.11 -4.32 5.15 -19.77 -0.10 -4.43 16 10 C -0.05 -2.43 5.01 29.85 0.15 -2.28 16 11 C 0.04 2.39 4.95 29.85 0.15 2.54 16 12 C -0.54 -31.96 9.11 25.60 0.23 -31.73 16 13 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 14 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 15 N -0.93 -58.44 13.29 21.45 0.28 -58.16 16 16 Si 0.97 45.14 29.54 68.60 2.03 47.17 16 17 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 18 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 19 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 20 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 21 H 0.08 1.25 7.67 -2.38 -0.02 1.24 16 22 H 0.06 1.25 7.65 -2.39 -0.02 1.23 16 23 H 0.17 3.03 6.30 -2.92 -0.02 3.01 16 24 H 0.16 2.87 8.06 -2.91 -0.02 2.84 16 25 H 0.14 4.49 8.06 -2.91 -0.02 4.47 16 26 H 0.06 2.73 8.05 -2.39 -0.02 2.71 16 27 H 0.06 2.71 7.69 -2.38 -0.02 2.69 16 28 H -0.01 -0.72 8.14 -2.39 -0.02 -0.73 16 29 H -0.01 -0.80 8.14 -2.38 -0.02 -0.82 16 30 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -69.29 277.47 5.40 -63.89 By element: Atomic # 1 Polarization: 1.09 SS G_CDS: 1.13 Total: 2.22 kcal Atomic # 6 Polarization: -43.74 SS G_CDS: 2.93 Total: -40.81 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: 0.28 Total: -58.16 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: -0.89 Total: -12.45 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -0.08 Total: -1.85 kcal Total: -69.29 5.40 -63.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041219086.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.821 kcal (2) G-P(sol) polarization free energy of solvation -69.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds