Wall clock time and date at job start Sun Mar 29 2020 23:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00106 * 2 1 4 4 H 1.48499 * 109.47009 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47180 * 300.00418 * 3 2 1 6 6 H 1.48496 * 109.46919 * 60.00294 * 3 2 1 7 7 C 1.37882 * 119.99663 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99869 * 359.97438 * 7 2 1 10 10 C 1.53009 * 109.47024 * 180.02562 * 9 7 2 11 11 S 1.81395 * 109.47197 * 179.97438 * 10 9 7 12 12 C 1.81398 * 103.00039 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47274 * 179.97438 * 12 11 10 14 14 C 1.38271 * 119.98983 * 270.25598 * 13 12 11 15 15 C 1.38219 * 120.05279 * 180.25774 * 14 13 12 16 16 C 1.38227 * 120.02402 * 359.48356 * 15 14 13 17 17 C 1.38435 * 119.97416 * 0.26250 * 16 15 14 18 18 F 1.35097 * 120.02437 * 179.97438 * 17 16 15 19 19 C 1.38179 * 119.98470 * 90.00096 * 13 12 11 20 20 H 0.97008 * 119.99551 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47268 * 60.00412 * 9 7 2 22 22 H 1.09001 * 109.47637 * 299.99639 * 9 7 2 23 23 H 1.09000 * 109.46804 * 60.00076 * 10 9 7 24 24 H 1.08993 * 109.46856 * 300.00270 * 10 9 7 25 25 H 1.09007 * 109.46905 * 59.99974 * 12 11 10 26 26 H 1.08994 * 109.47048 * 300.00089 * 12 11 10 27 27 H 1.08000 * 119.97479 * 0.02562 * 14 13 12 28 28 H 1.08002 * 119.99072 * 179.76964 * 15 14 13 29 29 H 1.07999 * 120.01289 * 180.23490 * 16 15 14 30 30 H 1.07994 * 120.01414 * 0.02562 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 16 1.3381 -5.2330 0.0002 12 6 2.6647 -6.4703 0.0009 13 6 2.0630 -7.8519 0.0022 14 6 1.7825 -8.4824 1.2004 15 6 1.2356 -9.7518 1.2032 16 6 0.9586 -10.3882 0.0078 17 6 1.2341 -9.7558 -1.1925 18 9 0.9643 -10.3770 -2.3614 19 6 1.7870 -8.4861 -1.1940 20 1 -0.4850 0.8402 0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6246 -2.5571 0.8897 23 1 2.8718 -3.6044 0.8895 24 1 2.8718 -3.6044 -0.8904 25 1 3.2808 -6.3418 0.8909 26 1 3.2808 -6.3427 -0.8890 27 1 1.9943 -7.9842 2.1349 28 1 1.0203 -10.2449 2.1397 29 1 0.5278 -11.3785 0.0101 30 1 2.0028 -7.9920 -2.1297 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058263136.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:20:00 Heat of formation + Delta-G solvation = -42.996038 kcal Electronic energy + Delta-G solvation = -13628.984930 eV Core-core repulsion = 11043.065944 eV Total energy + Delta-G solvation = -2585.918986 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.068 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.98868 -39.20540 -33.70555 -32.92054 -30.88621 -30.67566 -27.33837 -25.23450 -22.87704 -22.01103 -20.94453 -17.44374 -16.53751 -16.49008 -16.28654 -15.78963 -15.46187 -14.52658 -14.37340 -14.01882 -13.77159 -13.49167 -13.26508 -12.51564 -12.41252 -11.97562 -11.78955 -11.51674 -11.21881 -11.05533 -10.60386 -10.22716 -9.74285 -9.68064 -9.08856 -9.00944 -8.71321 -8.44282 -7.19724 -6.07856 -4.12622 0.86970 1.06211 2.24097 3.16382 3.27087 3.34825 3.38367 3.55671 4.07666 4.40267 4.49196 4.60034 4.87717 5.04830 5.12783 5.27750 5.27993 5.49286 5.71881 5.91329 5.95610 5.96221 6.13950 6.14751 6.34508 6.69621 6.74281 7.54617 7.62729 7.88343 8.25249 8.92629 9.51500 11.02941 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.058485 B = 0.003804 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.639444 B = 7358.942014 C = 7482.470341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.037 3.963 10 C -0.061 4.061 11 S -0.272 6.272 12 C -0.058 4.058 13 C -0.032 4.032 14 C -0.114 4.114 15 C -0.091 4.091 16 C -0.157 4.157 17 C 0.097 3.903 18 F -0.141 7.141 19 C -0.138 4.138 20 H 0.262 0.738 21 H 0.027 0.973 22 H 0.027 0.973 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.132 0.868 28 H 0.133 0.867 29 H 0.133 0.867 30 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.505 -18.837 1.144 19.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.076 0.924 9 C -0.002 4.002 10 C -0.209 4.209 11 S -0.042 6.042 12 C -0.205 4.205 13 C -0.033 4.033 14 C -0.134 4.134 15 C -0.109 4.109 16 C -0.177 4.177 17 C 0.078 3.922 18 F -0.120 7.120 19 C -0.159 4.159 20 H 0.072 0.928 21 H 0.045 0.955 22 H 0.045 0.955 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.108 0.892 26 H 0.107 0.893 27 H 0.150 0.850 28 H 0.151 0.849 29 H 0.151 0.849 30 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.262 -18.878 1.094 19.189 hybrid contribution 1.633 1.051 -0.249 1.958 sum 4.894 -17.826 0.844 18.505 Atomic orbital electron populations 1.69987 1.06088 1.26784 1.50011 1.25019 0.94896 0.99332 0.95022 0.86461 0.79989 0.83412 0.77699 1.19690 1.20876 1.20871 1.21130 0.93037 0.90227 1.51747 0.92384 1.18914 0.93424 0.89248 0.98594 1.23733 1.01493 0.92486 1.03214 1.87228 1.16283 1.02653 1.98043 1.22275 0.99511 0.93083 1.05653 1.19162 0.97532 0.93921 0.92699 1.21152 0.99269 0.95004 0.97958 1.20978 0.97667 0.94711 0.97548 1.21137 1.03718 1.01428 0.91382 1.17641 1.01107 0.92132 0.81355 1.91495 1.91800 1.82334 1.46358 1.21044 1.01487 0.93832 0.99532 0.92808 0.95504 0.95503 0.91289 0.91304 0.89155 0.89325 0.84982 0.84882 0.84883 0.84486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.04 0.95 4.98 -27.88 -0.14 0.82 16 10 C -0.06 -1.26 5.88 37.16 0.22 -1.05 16 11 S -0.27 -4.95 21.72 -107.50 -2.33 -7.29 16 12 C -0.06 -0.77 6.07 36.00 0.22 -0.55 16 13 C -0.03 -0.40 5.14 -104.63 -0.54 -0.93 16 14 C -0.11 -1.25 9.70 -39.58 -0.38 -1.63 16 15 C -0.09 -0.86 10.04 -39.59 -0.40 -1.26 16 16 C -0.16 -1.59 10.03 -39.51 -0.40 -1.99 16 17 C 0.10 1.16 7.30 -39.42 -0.29 0.87 16 18 F -0.14 -1.77 17.27 2.25 0.04 -1.73 16 19 C -0.14 -1.72 9.68 -39.51 -0.38 -2.10 16 20 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 21 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 22 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.07 1.35 8.14 -51.92 -0.42 0.93 16 24 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 25 H 0.09 1.08 8.09 -51.92 -0.42 0.66 16 26 H 0.09 1.10 8.09 -51.93 -0.42 0.68 16 27 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 28 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 29 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 30 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 283.54 15.07 4.27 4.27 Total: -1.00 -30.08 283.54 -8.57 -38.65 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: -3.76 Total: -3.25 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: -2.50 Total: -21.07 kcal Atomic # 7 Polarization: -26.59 SS G_CDS: 0.74 Total: -25.85 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -4.95 SS G_CDS: -2.33 Total: -7.29 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.08 -8.57 -38.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058263136.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.342 kcal (2) G-P(sol) polarization free energy of solvation -30.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds