Wall clock time and date at job start Sun Mar 29 2020 22:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47121 * 2 1 4 4 C 1.50701 * 109.46987 * 120.00341 * 2 1 3 5 5 C 1.37393 * 123.36139 * 300.02254 * 4 2 1 6 6 C 1.33873 * 115.11768 * 179.97438 * 5 4 2 7 7 S 1.70618 * 110.97051 * 0.02562 * 6 5 4 8 8 C 1.36819 * 123.36121 * 120.00221 * 4 2 1 9 9 C 1.46332 * 125.46666 * 0.05599 * 8 4 2 10 10 O 1.21666 * 120.00234 * 359.97438 * 9 8 4 11 11 O 1.34896 * 120.00360 * 179.97438 * 9 8 4 12 12 C 1.34858 * 117.00418 * 179.97438 * 11 9 8 13 13 H 1.08001 * 119.99827 * 0.02562 * 12 11 9 14 14 C 1.38785 * 120.00121 * 180.02562 * 12 11 9 15 15 N 1.31436 * 120.00159 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00041 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47064 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47119 * 120.00049 * 16 14 12 19 19 H 1.48500 * 109.46869 * 239.99956 * 16 14 12 20 20 H 1.08996 * 109.47445 * 300.00014 * 1 2 3 21 21 H 1.09004 * 109.46562 * 60.00063 * 1 2 3 22 22 H 1.09000 * 109.46998 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47217 * 240.00395 * 2 1 3 24 24 H 1.08996 * 109.47664 * 300.00025 * 3 2 1 25 25 H 1.09001 * 109.47210 * 60.00384 * 3 2 1 26 26 H 1.09005 * 109.47260 * 179.97438 * 3 2 1 27 27 H 1.08001 * 122.44316 * 359.95973 * 5 4 2 28 28 H 1.08002 * 124.51754 * 180.02562 * 6 5 4 29 29 H 0.96999 * 120.00481 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.7428 -0.3020 2.5099 6 6 2.2746 -1.0548 3.4808 7 16 3.1851 -2.3410 2.8268 8 6 2.8219 -1.8270 1.1849 9 6 3.2899 -2.4868 -0.0344 10 8 2.9778 -2.0441 -1.1239 11 8 4.0676 -3.5858 0.0493 12 6 4.4640 -4.1453 -1.1120 13 1 4.1580 -3.7116 -2.0525 14 6 5.2652 -5.2785 -1.0984 15 7 5.6380 -5.8061 0.0463 16 14 5.8149 -6.0531 -2.7069 17 1 5.2646 -5.2739 -3.8450 18 1 7.2982 -6.0508 -2.7759 19 1 5.3182 -7.4507 -2.7784 20 1 -0.3634 0.5138 0.8899 21 1 -0.3632 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 1.6767 1.9563 -0.8899 25 1 1.6767 1.9563 0.8900 26 1 3.1301 1.4425 0.0005 27 1 1.1311 0.5636 2.7173 28 1 2.1445 -0.8724 4.5373 29 1 6.1983 -6.5979 0.0558 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064008685.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:50 Heat of formation + Delta-G solvation = -58.902752 kcal Electronic energy + Delta-G solvation = -14874.769269 eV Core-core repulsion = 12275.787726 eV Total energy + Delta-G solvation = -2598.981542 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.29949 -37.98866 -35.07434 -33.69591 -32.21882 -29.42175 -26.84494 -25.74956 -24.15089 -21.63659 -20.95365 -18.08163 -17.94623 -17.06221 -15.70667 -15.32411 -14.63608 -14.36747 -14.01275 -13.74464 -13.24823 -13.21770 -12.47916 -12.24132 -12.18170 -11.84538 -11.65269 -11.26354 -11.04676 -10.82541 -10.55337 -10.52024 -10.40389 -10.22645 -9.86045 -8.81086 -8.65612 -8.35313 -8.02057 -6.49259 -4.11881 0.98925 2.01447 2.45454 2.78299 3.12851 3.16361 3.24091 3.89564 3.94370 4.56492 5.10016 5.11187 5.29025 5.41740 5.55178 5.71498 5.86661 5.92183 5.99670 6.06215 6.25077 6.38559 6.41562 6.56488 6.66424 6.77838 7.11046 7.37351 7.88478 8.65342 8.98745 9.76374 10.68117 Molecular weight = 240.06amu Principal moments of inertia in cm(-1) A = 0.030845 B = 0.007452 C = 0.006251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.543725 B = 3756.678901 C = 4478.468704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.068 4.068 3 C -0.135 4.135 4 C -0.042 4.042 5 C -0.140 4.140 6 C -0.266 4.266 7 S 0.235 5.765 8 C -0.213 4.213 9 C 0.463 3.537 10 O -0.540 6.540 11 O -0.205 6.205 12 C -0.372 4.372 13 H 0.100 0.900 14 C 0.041 3.959 15 N -0.856 5.856 16 Si 0.945 3.055 17 H -0.264 1.264 18 H -0.275 1.275 19 H -0.275 1.275 20 H 0.048 0.952 21 H 0.054 0.946 22 H 0.053 0.947 23 H 0.125 0.875 24 H 0.055 0.945 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.135 0.865 28 H 0.161 0.839 29 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.129 8.660 4.987 11.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.088 4.088 3 C -0.193 4.193 4 C -0.056 4.056 5 C -0.172 4.172 6 C -0.404 4.404 7 S 0.504 5.496 8 C -0.331 4.331 9 C 0.311 3.689 10 O -0.439 6.439 11 O -0.112 6.112 12 C -0.449 4.449 13 H 0.118 0.882 14 C -0.164 4.164 15 N -0.493 5.493 16 Si 0.770 3.230 17 H -0.188 1.188 18 H -0.201 1.201 19 H -0.201 1.201 20 H 0.067 0.933 21 H 0.074 0.926 22 H 0.072 0.928 23 H 0.142 0.858 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.153 0.847 28 H 0.179 0.821 29 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.202 7.350 5.487 10.545 hybrid contribution -0.580 0.820 -1.047 1.451 sum -5.783 8.171 4.440 10.951 Atomic orbital electron populations 1.21754 0.94911 1.01652 1.00937 1.20386 0.95279 0.95673 0.97481 1.21752 1.01203 0.95362 1.00937 1.19306 0.96654 0.93956 0.95696 1.19671 1.04161 1.02324 0.91073 1.25308 1.07461 1.03496 1.04086 1.83529 1.45465 1.24701 0.95880 1.23761 1.09829 1.03052 0.96506 1.19366 0.80893 0.81891 0.86772 1.90534 1.59074 1.65705 1.28630 1.83946 1.55205 1.35502 1.36559 1.21376 1.30310 1.09281 0.83922 0.88238 1.25399 0.95949 0.95751 0.99284 1.70000 1.33118 1.20952 1.25197 0.85572 0.78529 0.78857 0.80086 1.18785 1.20062 1.20067 0.93295 0.92645 0.92770 0.85751 0.92639 0.93303 0.92770 0.84739 0.82149 0.91887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 9.04 37.16 0.34 -1.57 15 2 C -0.07 -1.15 3.08 -91.77 -0.28 -1.43 15 3 C -0.13 -1.90 9.04 37.15 0.34 -1.57 15 4 C -0.04 -0.76 4.72 -105.44 -0.50 -1.26 15 5 C -0.14 -2.11 9.09 -41.42 -0.38 -2.48 15 6 C -0.27 -3.83 10.92 29.20 0.32 -3.51 15 7 S 0.23 4.19 22.92 -107.50 -2.46 1.72 15 8 C -0.21 -4.54 6.45 -36.84 -0.24 -4.77 15 9 C 0.46 12.04 7.86 33.99 0.27 12.31 15 10 O -0.54 -14.58 13.22 -19.40 -0.26 -14.84 15 11 O -0.21 -5.96 9.60 -22.10 -0.21 -6.17 15 12 C -0.37 -10.98 9.65 30.93 0.30 -10.68 15 13 H 0.10 2.93 6.86 -52.49 -0.36 2.57 15 14 C 0.04 1.15 5.50 -17.52 -0.10 1.05 15 15 N -0.86 -24.78 13.67 55.49 0.76 -24.02 15 16 Si 0.95 21.03 29.55 -169.99 -5.02 16.01 15 17 H -0.26 -5.78 7.11 56.52 0.40 -5.38 15 18 H -0.28 -5.92 7.11 56.52 0.40 -5.52 15 19 H -0.28 -5.92 7.11 56.52 0.40 -5.52 15 20 H 0.05 0.60 7.79 -51.93 -0.40 0.19 15 21 H 0.05 0.69 8.14 -51.93 -0.42 0.27 15 22 H 0.05 0.82 8.14 -51.93 -0.42 0.39 15 23 H 0.12 2.55 4.92 -51.93 -0.26 2.29 15 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 15 25 H 0.05 0.59 7.79 -51.93 -0.40 0.19 15 26 H 0.05 0.82 8.14 -51.93 -0.42 0.39 15 27 H 0.13 1.65 7.83 -52.49 -0.41 1.24 15 28 H 0.16 1.77 8.06 -52.49 -0.42 1.34 15 29 H 0.27 7.14 8.31 -40.82 -0.34 6.80 15 LS Contribution 269.75 15.07 4.07 4.07 Total: -1.00 -31.47 269.75 -6.15 -37.62 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -3.08 Total: -0.46 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: 0.07 Total: -13.92 kcal Atomic # 7 Polarization: -24.78 SS G_CDS: 0.76 Total: -24.02 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -0.47 Total: -21.01 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 4.19 SS G_CDS: -2.46 Total: 1.72 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.47 -6.15 -37.62 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064008685.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.286 kcal (2) G-P(sol) polarization free energy of solvation -31.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds