Wall clock time and date at job start Sun Mar 29 2020 22:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00404 * 2 1 4 4 H 1.48494 * 109.47182 * 270.00235 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00179 * 3 2 1 6 6 H 1.48505 * 109.47095 * 149.99711 * 3 2 1 7 7 C 1.37884 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00191 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99709 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47130 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47131 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47289 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00072 * 180.02562 * 12 11 10 14 14 O 1.21629 * 119.99861 * 359.97438 * 13 12 11 15 15 C 1.47266 * 119.99923 * 179.97438 * 13 12 11 16 16 C 1.35206 * 123.14300 * 179.73114 * 15 13 12 17 17 S 1.70945 * 108.82973 * 179.87206 * 16 15 13 18 18 C 1.70781 * 91.12495 * 0.32900 * 17 16 15 19 19 N 1.28647 * 110.56034 * 359.80905 * 18 17 16 20 20 H 0.97007 * 119.99539 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46980 * 59.99845 * 9 7 2 22 22 H 1.09004 * 109.47113 * 299.99826 * 9 7 2 23 23 H 1.09001 * 109.46997 * 60.00245 * 10 9 7 24 24 H 1.08996 * 109.47452 * 299.99818 * 10 9 7 25 25 H 1.09001 * 109.47289 * 60.00050 * 11 10 9 26 26 H 1.09004 * 109.47261 * 300.00306 * 11 10 9 27 27 H 0.97001 * 119.99251 * 0.02562 * 12 11 10 28 28 H 1.07997 * 125.58303 * 0.02562 * 16 15 13 29 29 H 1.08003 * 124.71913 * 179.83529 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4800 -4.9871 0.0012 12 7 2.4319 -6.1008 0.0018 13 6 1.9825 -7.3714 0.0019 14 8 0.7867 -7.5935 0.0020 15 6 2.9394 -8.4908 0.0020 16 6 2.5592 -9.7883 0.0074 17 16 3.9567 -10.7728 0.0018 18 6 4.9675 -9.3962 0.0024 19 7 4.2640 -8.3191 0.0024 20 1 -0.4850 0.8401 0.0004 21 1 0.6246 -2.5571 -0.8897 22 1 0.6239 -2.5567 0.8903 23 1 2.8717 -3.6045 0.8906 24 1 2.8717 -3.6045 -0.8894 25 1 0.8530 -5.0451 -0.8886 26 1 0.8535 -5.0445 0.8914 27 1 3.3856 -5.9235 0.0021 28 1 1.5397 -10.1443 0.0118 29 1 6.0471 -9.4257 0.0022 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070940404.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:44 Heat of formation + Delta-G solvation = -9.315935 kcal Electronic energy + Delta-G solvation = -13951.914981 eV Core-core repulsion = 11387.376435 eV Total energy + Delta-G solvation = -2564.538545 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.51444 -38.57150 -35.42668 -33.28937 -31.30172 -30.75600 -27.29006 -25.65581 -23.50010 -22.00572 -20.62082 -19.64286 -18.84181 -16.80825 -16.20724 -15.95185 -15.60272 -14.98525 -14.61782 -14.42071 -13.74044 -13.53200 -13.51764 -12.29911 -12.21489 -11.81059 -11.71238 -10.88909 -10.71811 -10.59109 -10.21203 -10.10082 -10.02151 -9.84132 -9.40352 -9.32659 -9.10349 -8.74230 -8.35301 -5.99997 -4.02811 0.28184 0.96931 1.32147 1.84358 3.32506 3.37744 3.37937 3.39390 3.42824 3.94361 4.46227 4.76414 4.98447 5.07649 5.35771 5.59188 5.77193 5.79426 6.18112 6.47575 6.62285 6.83872 7.02007 7.12232 7.65684 7.74263 7.78273 7.98914 8.31630 8.40787 9.03774 9.61160 11.11290 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.063588 B = 0.003638 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.231570 B = 7694.445830 C = 8108.927776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.115 3.885 12 N -0.705 5.705 13 C 0.585 3.415 14 O -0.540 6.540 15 C 0.010 3.990 16 C -0.223 4.223 17 S 0.201 5.799 18 C -0.001 4.001 19 N -0.440 5.440 20 H 0.261 0.739 21 H 0.019 0.981 22 H 0.019 0.981 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.408 0.592 28 H 0.190 0.810 29 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.991 -22.055 0.011 24.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.008 4.008 12 N -0.355 5.355 13 C 0.368 3.632 14 O -0.417 6.417 15 C -0.125 4.125 16 C -0.365 4.365 17 S 0.455 5.545 18 C -0.301 4.301 19 N -0.155 5.155 20 H 0.070 0.930 21 H 0.038 0.962 22 H 0.038 0.962 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.243 0.757 28 H 0.207 0.793 29 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 9.442 -22.562 0.013 24.458 hybrid contribution 0.341 1.781 -0.009 1.813 sum 9.782 -20.780 0.004 22.968 Atomic orbital electron populations 1.69970 1.06051 1.26652 1.50627 1.25037 0.94873 0.99316 0.95310 0.86570 0.79797 0.83397 0.78079 1.20672 1.21214 1.19898 1.21210 0.93028 0.90922 1.50835 0.92609 1.19036 0.93842 0.90832 0.97678 1.21895 0.99783 0.93142 1.01074 1.21738 0.91836 0.84985 1.02193 1.46062 1.11632 1.05211 1.72575 1.17090 0.86646 0.82183 0.77307 1.90816 1.15177 1.84679 1.51066 1.20671 0.89875 0.93982 1.07984 1.26642 1.06361 0.96644 1.06857 1.82899 0.95114 1.12280 1.64223 1.28487 1.05561 0.90740 1.05301 1.66968 1.03961 1.30922 1.13617 0.92953 0.96243 0.96219 0.92612 0.92609 0.91479 0.91484 0.75698 0.79273 0.77795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.07 13.29 55.43 0.74 -26.33 15 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 15 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 15 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 15 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 15 7 C -0.52 -14.79 9.11 -34.44 -0.31 -15.11 15 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 15 9 C 0.02 0.61 4.97 -27.88 -0.14 0.48 15 10 C -0.12 -2.46 5.27 -26.73 -0.14 -2.60 15 11 C 0.11 2.13 5.67 -4.04 -0.02 2.11 15 12 N -0.71 -11.53 5.55 -61.43 -0.34 -11.87 15 13 C 0.59 9.76 7.80 -12.59 -0.10 9.66 15 14 O -0.54 -10.52 16.71 5.25 0.09 -10.44 15 15 C 0.01 0.13 6.70 -84.53 -0.57 -0.44 15 16 C -0.22 -2.35 10.62 29.65 0.31 -2.03 15 17 S 0.20 1.33 22.97 -107.50 -2.47 -1.14 15 18 C 0.00 -0.01 12.17 51.43 0.63 0.62 15 19 N -0.44 -5.23 10.12 -12.36 -0.13 -5.35 15 20 H 0.26 7.44 8.31 -40.82 -0.34 7.10 15 21 H 0.02 0.53 8.14 -51.93 -0.42 0.11 15 22 H 0.02 0.53 8.14 -51.93 -0.42 0.11 15 23 H 0.06 1.10 8.14 -51.93 -0.42 0.68 15 24 H 0.06 1.10 8.14 -51.93 -0.42 0.68 15 25 H 0.07 1.29 8.14 -51.93 -0.42 0.87 15 26 H 0.07 1.29 8.14 -51.93 -0.42 0.87 15 27 H 0.41 6.00 7.99 -40.82 -0.33 5.67 15 28 H 0.19 1.84 8.03 -52.49 -0.42 1.42 15 29 H 0.21 0.84 8.06 -52.48 -0.42 0.42 15 LS Contribution 276.25 15.07 4.16 4.16 Total: -1.00 -33.29 276.25 -6.65 -39.94 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -3.25 Total: 0.11 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -0.44 Total: -5.80 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: 0.27 Total: -43.56 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.44 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -2.47 Total: -1.14 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -33.29 -6.65 -39.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940404.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.623 kcal (2) G-P(sol) polarization free energy of solvation -33.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds