Wall clock time and date at job start Sun Mar 29 2020 23:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43190 * 179.97438 * 2 1 4 4 C 1.39768 * 120.08051 * 278.08573 * 3 2 1 5 5 C 1.38069 * 120.15841 * 180.02562 * 4 3 2 6 6 C 1.38081 * 120.31007 * 359.97438 * 5 4 3 7 7 C 1.39734 * 120.15266 * 0.02562 * 6 5 4 8 8 C 1.47743 * 120.07560 * 179.97438 * 7 6 5 9 9 N 1.31870 * 126.22044 * 199.87071 * 8 7 6 10 10 C 1.32981 * 109.84637 * 180.02562 * 9 8 7 11 11 N 1.30967 * 109.49862 * 359.71264 * 10 9 8 12 12 N 1.36746 * 126.22371 * 19.87396 * 8 7 6 13 13 C 1.37089 * 126.97775 * 359.97438 * 12 8 7 14 14 H 1.08002 * 119.99977 * 22.30647 * 13 12 8 15 15 C 1.39083 * 120.00098 * 202.30643 * 13 12 8 16 16 N 1.31236 * 119.99788 * 176.03804 * 15 13 12 17 17 Si 1.86792 * 120.00027 * 356.30702 * 15 13 12 18 18 H 1.48507 * 109.46947 * 179.72659 * 17 15 13 19 19 H 1.48496 * 109.47387 * 299.72680 * 17 15 13 20 20 H 1.48501 * 109.47276 * 59.72814 * 17 15 13 21 21 C 1.39342 * 120.07879 * 98.35429 * 3 2 1 22 22 H 1.08002 * 119.92137 * 0.02562 * 4 3 2 23 23 H 1.07999 * 119.84680 * 179.97438 * 5 4 3 24 24 H 1.07999 * 119.91783 * 179.97438 * 6 5 4 25 25 H 1.07998 * 125.25610 * 180.02562 * 10 9 8 26 26 H 0.97008 * 120.00057 * 354.38957 * 16 15 13 27 27 H 1.08002 * 120.15340 * 359.97438 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2686 -0.1692 1.1974 5 6 4.6493 -0.1683 1.1994 6 6 5.3477 -0.0004 0.0201 7 6 4.6604 0.1704 -1.1845 8 6 5.4094 0.3504 -2.4452 9 7 4.9417 0.8741 -3.5615 10 6 5.8923 0.8780 -4.4913 11 7 6.9907 0.3650 -3.9957 12 7 6.7136 0.0043 -2.6668 13 6 7.5771 -0.5725 -1.7718 14 1 7.1908 -1.1217 -0.9259 15 6 8.9507 -0.4505 -1.9532 16 7 9.7766 -0.9353 -1.0560 17 14 9.6196 0.4101 -3.4701 18 1 11.1039 0.4134 -3.4232 19 1 9.1645 -0.3078 -4.6877 20 1 9.1224 1.8089 -3.5054 21 6 3.2662 0.1761 -1.1930 22 1 2.7287 -0.3014 2.1234 23 1 5.1855 -0.2995 2.1276 24 1 6.4276 -0.0004 0.0290 25 1 5.7780 1.2516 -5.4981 26 1 9.4312 -1.3057 -0.2286 27 1 2.7300 0.3117 -2.1206 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079012893.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:19:31 Heat of formation + Delta-G solvation = 132.132099 kcal Electronic energy + Delta-G solvation = -15673.351432 eV Core-core repulsion = 13011.795333 eV Total energy + Delta-G solvation = -2661.556099 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 240.071 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.86389 -38.96468 -36.31249 -34.47998 -32.22771 -31.71980 -31.02282 -28.89775 -25.49975 -23.73193 -22.98104 -21.40000 -20.18351 -18.68426 -18.10010 -16.17950 -15.82552 -15.14839 -14.71109 -14.45474 -13.94767 -13.87568 -13.69734 -13.26422 -13.07589 -12.66252 -12.60030 -12.16989 -11.71392 -11.24524 -11.08993 -11.02835 -10.22336 -10.06629 -9.72553 -9.39144 -8.93023 -8.80652 -8.58455 -7.95322 -7.59165 -4.93282 0.90194 1.30268 2.62765 2.72323 3.11733 3.31921 3.45206 3.60984 3.76908 3.86762 4.02616 4.09508 4.24960 4.60275 4.83766 5.05836 5.14432 5.47810 5.56850 5.72826 5.89287 5.98269 6.19834 6.38974 6.52301 6.74893 6.96089 7.02663 7.19806 7.54412 7.63972 7.67470 8.08699 8.59705 9.26991 9.78628 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.033906 B = 0.007381 C = 0.006145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.615945 B = 3792.673650 C = 4555.685132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C 0.267 3.733 3 C -0.040 4.040 4 C -0.083 4.083 5 C -0.118 4.118 6 C -0.090 4.090 7 C 0.026 3.974 8 C 0.159 3.841 9 N -0.548 5.548 10 C 0.154 3.846 11 N -0.385 5.385 12 N -0.151 5.151 13 C -0.370 4.370 14 H 0.129 0.871 15 C 0.044 3.956 16 N -0.808 5.808 17 Si 1.106 2.894 18 H -0.305 1.305 19 H -0.264 1.264 20 H -0.283 1.283 21 C -0.044 4.044 22 H 0.128 0.872 23 H 0.133 0.867 24 H 0.154 0.846 25 H 0.197 0.803 26 H 0.286 0.714 27 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.549 1.050 3.756 5.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.109 5.109 2 C -0.047 4.047 3 C -0.043 4.043 4 C -0.104 4.104 5 C -0.136 4.136 6 C -0.111 4.111 7 C 0.023 3.977 8 C -0.099 4.099 9 N -0.279 5.279 10 C -0.144 4.144 11 N -0.228 5.228 12 N 0.075 4.925 13 C -0.506 4.506 14 H 0.147 0.853 15 C -0.174 4.174 16 N -0.434 5.434 17 Si 0.935 3.065 18 H -0.234 1.234 19 H -0.190 1.190 20 H -0.209 1.209 21 C -0.066 4.066 22 H 0.146 0.854 23 H 0.151 0.849 24 H 0.171 0.829 25 H 0.214 0.786 26 H 0.097 0.903 27 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.648 1.437 2.593 5.513 hybrid contribution -0.951 -0.622 1.052 1.548 sum -5.599 0.816 3.644 6.730 Atomic orbital electron populations 1.81205 1.12119 1.09749 1.07867 1.25728 0.92645 0.93111 0.93255 1.15812 0.84056 1.09341 0.95121 1.21115 0.94407 0.98698 0.96175 1.20960 0.93276 1.01052 0.98321 1.22128 1.02588 0.95322 0.91012 1.17349 0.91260 0.99705 0.89389 1.21467 0.85623 1.07860 0.94993 1.70239 1.32339 1.25713 0.99640 1.25147 0.87006 1.02381 0.99866 1.77341 1.24539 1.30065 0.90805 1.46718 1.07870 1.31299 1.06573 1.21531 0.89301 1.34294 1.05495 0.85346 1.27144 0.91590 0.94349 1.04347 1.70865 1.37586 1.27817 1.07112 0.82825 0.72822 0.77103 0.73787 1.23386 1.18980 1.20942 1.21184 0.92921 0.95622 0.96921 0.85432 0.84928 0.82909 0.78641 0.90285 0.84283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.94 18.54 41.84 0.78 -6.16 15 2 C 0.27 3.86 15.32 -22.48 -0.34 3.52 15 3 C -0.04 -0.55 5.72 -106.99 -0.61 -1.16 15 4 C -0.08 -0.99 9.75 -39.07 -0.38 -1.37 15 5 C -0.12 -1.49 10.02 -39.70 -0.40 -1.88 15 6 C -0.09 -1.46 8.74 -39.08 -0.34 -1.81 15 7 C 0.03 0.47 5.85 -105.01 -0.61 -0.14 15 8 C 0.16 3.54 7.63 -154.08 -1.18 2.36 15 9 N -0.55 -12.13 10.99 -12.15 -0.13 -12.26 15 10 C 0.15 3.30 12.99 -91.83 -1.19 2.10 15 11 N -0.39 -9.25 7.83 29.29 0.23 -9.02 15 12 N -0.15 -3.64 3.57 -9.38 -0.03 -3.68 15 13 C -0.37 -8.80 8.94 -14.89 -0.13 -8.94 15 14 H 0.13 2.87 5.85 -52.49 -0.31 2.57 15 15 C 0.04 1.08 5.50 -17.49 -0.10 0.98 15 16 N -0.81 -19.69 13.68 55.50 0.76 -18.93 15 17 Si 1.11 25.17 25.96 -169.99 -4.41 20.76 15 18 H -0.30 -6.79 7.11 56.52 0.40 -6.38 15 19 H -0.26 -6.05 6.81 56.52 0.38 -5.67 15 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 21 C -0.04 -0.70 9.40 -38.73 -0.36 -1.07 15 22 H 0.13 1.18 8.06 -52.49 -0.42 0.75 15 23 H 0.13 1.30 8.06 -52.49 -0.42 0.87 15 24 H 0.15 2.69 5.05 -52.49 -0.27 2.43 15 25 H 0.20 3.31 8.06 -52.49 -0.42 2.89 15 26 H 0.29 6.50 8.73 -40.82 -0.36 6.14 15 27 H 0.14 2.24 7.97 -52.49 -0.42 1.82 15 LS Contribution 253.23 15.07 3.82 3.82 Total: -1.00 -27.53 253.23 -6.08 -33.61 By element: Atomic # 1 Polarization: 0.69 SS G_CDS: -1.43 Total: -0.74 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -5.65 Total: -7.40 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: 1.60 Total: -50.05 kcal Atomic # 14 Polarization: 25.17 SS G_CDS: -4.41 Total: 20.76 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -27.53 -6.08 -33.61 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079012893.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.741 kcal (2) G-P(sol) polarization free energy of solvation -27.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds