Wall clock time and date at job start Sun Mar 29 2020 22:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47608 * 335.30876 * 3 2 1 5 5 C 1.37103 * 119.99473 * 92.39907 * 4 3 2 6 6 H 1.07997 * 120.00489 * 314.47006 * 5 4 3 7 7 C 1.38950 * 119.99330 * 134.46998 * 5 4 3 8 8 N 1.31413 * 119.99813 * 157.92590 * 7 5 4 9 9 Si 1.86801 * 120.00189 * 337.91982 * 7 5 4 10 10 H 1.48495 * 109.47072 * 95.22940 * 9 7 5 11 11 H 1.48501 * 109.47000 * 215.22799 * 9 7 5 12 12 H 1.48501 * 109.47318 * 335.22677 * 9 7 5 13 13 C 1.34771 * 120.00385 * 272.40593 * 4 3 2 14 14 O 1.21291 * 120.00554 * 183.59169 * 13 4 3 15 15 C 1.50698 * 119.99739 * 3.59557 * 13 4 3 16 16 H 1.08998 * 110.85470 * 21.33527 * 15 13 4 17 17 C 1.54268 * 110.78820 * 144.75818 * 15 13 4 18 18 C 1.52330 * 112.58814 * 142.80096 * 17 15 13 19 19 C 1.54259 * 112.47747 * 0.06993 * 18 17 15 20 20 S 1.83764 * 102.66884 * 335.32779 * 19 18 17 21 21 H 1.08999 * 109.46940 * 215.31126 * 3 2 1 22 22 H 1.08996 * 109.47470 * 95.31255 * 3 2 1 23 23 H 0.97002 * 119.99657 * 179.97438 * 8 7 5 24 24 H 1.09004 * 108.86546 * 21.97694 * 17 15 13 25 25 H 1.09004 * 108.86618 * 263.61857 * 17 15 13 26 26 H 1.09001 * 108.86886 * 120.81918 * 18 17 15 27 27 H 1.09005 * 108.86574 * 239.32587 * 18 17 15 28 28 H 1.08999 * 110.78577 * 93.67318 * 19 18 17 29 29 H 1.09003 * 110.78782 * 217.13173 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.2540 0.5770 5 6 3.3729 -2.3215 -0.2379 6 1 2.6766 -2.6026 -1.0141 7 6 4.5485 -3.0418 -0.0650 8 7 4.6343 -4.2757 -0.5090 9 14 6.0069 -2.2563 0.7983 10 1 5.9905 -2.6286 2.2357 11 1 7.2673 -2.7363 0.1770 12 1 5.9222 -0.7794 0.6685 13 6 3.2756 -1.3590 1.9087 14 8 3.7418 -2.3747 2.3800 15 6 2.8959 -0.2143 2.8123 16 1 2.1738 0.4413 2.3255 17 6 2.3433 -0.7364 4.1546 18 6 2.7699 0.1238 5.3372 19 6 3.6527 1.3152 4.9118 20 16 4.3871 0.7291 3.3326 21 1 2.9709 0.8394 0.5940 22 1 2.9713 0.0960 -1.0232 23 1 5.4551 -4.7784 -0.3886 24 1 2.7015 -1.7539 4.3114 25 1 1.2545 -0.7527 4.1052 26 1 1.8786 0.5056 5.8351 27 1 3.3278 -0.4950 6.0401 28 1 3.0471 2.2069 4.7499 29 1 4.4308 1.5037 5.6516 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266601321.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:07 Heat of formation + Delta-G solvation = 10.079177 kcal Electronic energy + Delta-G solvation = -15378.800257 eV Core-core repulsion = 12815.102747 eV Total energy + Delta-G solvation = -2563.697510 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.32960 -36.39068 -35.61298 -34.43420 -32.30400 -29.88820 -27.77323 -25.99341 -23.98148 -21.02208 -19.45669 -17.96327 -17.45096 -16.71718 -16.09017 -15.23112 -14.89543 -14.41972 -13.88798 -13.71731 -13.29772 -13.08245 -12.75364 -12.59319 -12.50572 -12.13243 -11.72403 -11.55276 -11.43783 -11.14522 -10.98214 -10.45234 -10.35714 -10.07138 -9.71346 -8.83038 -8.70939 -7.95534 -7.56732 -6.34713 -4.16222 1.72638 2.33564 2.96401 3.11853 3.31022 3.46527 3.62037 3.76008 4.18768 4.42139 4.51340 4.59856 4.79755 4.99582 5.09124 5.11213 5.24327 5.39797 5.51748 5.56180 5.65986 5.87510 5.93582 6.06887 6.34586 7.67045 7.74971 7.88190 8.53181 8.67548 9.23349 9.52773 10.70360 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.021185 B = 0.012418 C = 0.009295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.388343 B = 2254.242014 C = 3011.747676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.203 3.797 3 C 0.186 3.814 4 N -0.453 5.453 5 C -0.361 4.361 6 H 0.098 0.902 7 C 0.103 3.897 8 N -0.851 5.851 9 Si 0.891 3.109 10 H -0.252 1.252 11 H -0.300 1.300 12 H -0.268 1.268 13 C 0.477 3.523 14 O -0.512 6.512 15 C -0.060 4.060 16 H 0.102 0.898 17 C -0.119 4.119 18 C -0.120 4.120 19 C -0.074 4.074 20 S -0.264 6.264 21 H 0.106 0.894 22 H 0.128 0.872 23 H 0.275 0.725 24 H 0.097 0.903 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.899 11.853 7.937 14.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.123 5.123 2 C -0.116 4.116 3 C 0.058 3.942 4 N -0.177 5.177 5 C -0.486 4.486 6 H 0.115 0.885 7 C -0.109 4.109 8 N -0.484 5.484 9 Si 0.719 3.281 10 H -0.177 1.177 11 H -0.228 1.228 12 H -0.192 1.192 13 C 0.264 3.736 14 O -0.391 6.391 15 C -0.192 4.192 16 H 0.120 0.880 17 C -0.158 4.158 18 C -0.159 4.159 19 C -0.223 4.223 20 S -0.038 6.038 21 H 0.123 0.877 22 H 0.146 0.854 23 H 0.085 0.915 24 H 0.115 0.885 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.106 0.894 29 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.142 11.315 7.639 13.700 hybrid contribution 0.007 0.210 0.771 0.799 sum -1.135 11.526 8.409 14.312 Atomic orbital electron populations 1.81081 1.13345 1.08590 1.09274 1.30249 0.96091 0.92650 0.92657 1.19293 0.80484 0.90736 1.03657 1.43475 1.59406 1.10590 1.04178 1.18787 1.06282 1.06204 1.17365 0.88451 1.25273 0.98154 0.94051 0.93404 1.69770 1.27760 1.07570 1.43273 0.86637 0.79833 0.80002 0.81663 1.17663 1.22782 1.19217 1.19588 0.83681 0.87718 0.82648 1.90588 1.44471 1.30502 1.73537 1.24202 0.96616 0.98862 0.99499 0.88001 1.21988 1.01193 1.02509 0.90099 1.21980 0.99566 0.95594 0.98787 1.24154 1.01246 1.00356 0.96494 1.88216 1.24663 1.64481 1.26393 0.87653 0.85392 0.91452 0.88474 0.90842 0.90924 0.90496 0.89371 0.87865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -8.41 18.54 42.16 0.78 -7.63 15 2 C 0.20 3.51 14.96 -20.76 -0.31 3.20 15 3 C 0.19 3.06 5.48 -6.83 -0.04 3.02 15 4 N -0.45 -10.10 2.05 -117.94 -0.24 -10.34 15 5 C -0.36 -9.56 9.61 -14.93 -0.14 -9.70 15 6 H 0.10 2.72 8.06 -52.49 -0.42 2.29 15 7 C 0.10 2.89 4.76 -17.47 -0.08 2.81 15 8 N -0.85 -25.01 13.96 55.50 0.77 -24.24 15 9 Si 0.89 22.81 25.20 -169.99 -4.28 18.52 15 10 H -0.25 -6.86 6.46 56.52 0.37 -6.49 15 11 H -0.30 -7.54 7.11 56.52 0.40 -7.14 15 12 H -0.27 -6.48 7.11 56.52 0.40 -6.08 15 13 C 0.48 10.71 5.22 -10.99 -0.06 10.65 15 14 O -0.51 -13.58 11.77 5.55 0.07 -13.52 15 15 C -0.06 -1.04 2.85 -27.22 -0.08 -1.12 15 16 H 0.10 1.55 5.86 -51.93 -0.30 1.24 15 17 C -0.12 -1.81 5.89 -26.41 -0.16 -1.96 15 18 C -0.12 -1.40 6.31 -26.41 -0.17 -1.57 15 19 C -0.07 -0.84 7.44 37.82 0.28 -0.56 15 20 S -0.26 -4.37 22.71 -107.50 -2.44 -6.81 15 21 H 0.11 1.44 6.69 -51.93 -0.35 1.09 15 22 H 0.13 1.84 8.02 -51.93 -0.42 1.42 15 23 H 0.28 7.62 8.31 -40.82 -0.34 7.28 15 24 H 0.10 1.73 6.88 -51.93 -0.36 1.37 15 25 H 0.07 1.01 8.14 -51.93 -0.42 0.59 15 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 15 27 H 0.08 0.87 8.14 -51.93 -0.42 0.45 15 28 H 0.09 0.84 8.14 -51.93 -0.42 0.41 15 29 H 0.10 1.01 8.14 -51.93 -0.42 0.59 15 LS Contribution 261.97 15.07 3.95 3.95 Total: -1.00 -32.73 261.97 -5.28 -38.01 By element: Atomic # 1 Polarization: 0.42 SS G_CDS: -3.13 Total: -2.71 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: -0.75 Total: 4.77 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: 1.31 Total: -42.21 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.07 Total: -13.52 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.28 Total: 18.52 kcal Atomic # 16 Polarization: -4.37 SS G_CDS: -2.44 Total: -6.81 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -32.73 -5.28 -38.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266601321.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.092 kcal (2) G-P(sol) polarization free energy of solvation -32.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds