Wall clock time and date at job start Sun Mar 29 2020 23:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37098 * 119.99704 * 2 1 4 4 H 1.07997 * 120.00139 * 142.83163 * 3 2 1 5 5 C 1.38949 * 120.00193 * 322.82063 * 3 2 1 6 6 N 1.31407 * 120.00205 * 158.41553 * 5 3 2 7 7 Si 1.86798 * 119.99935 * 338.41166 * 5 3 2 8 8 H 1.48503 * 109.47101 * 95.72362 * 7 5 3 9 9 H 1.48504 * 109.47330 * 215.71665 * 7 5 3 10 10 H 1.48497 * 109.47533 * 335.71963 * 7 5 3 11 11 C 1.34772 * 120.00061 * 179.97438 * 2 1 3 12 12 O 1.21294 * 120.00156 * 180.02562 * 11 2 1 13 13 C 1.50703 * 119.99719 * 0.02562 * 11 2 1 14 14 C 1.52999 * 109.46964 * 180.02562 * 13 11 2 15 15 C 1.50701 * 109.47338 * 179.97438 * 14 13 11 16 16 N 1.29025 * 124.91463 * 90.30237 * 15 14 13 17 17 C 1.31786 * 117.12429 * 180.22877 * 16 15 14 18 18 C 1.33636 * 114.49631 * 359.48673 * 17 16 15 19 19 S 1.70971 * 124.91438 * 270.00075 * 15 14 13 20 20 H 1.09001 * 109.47014 * 265.14597 * 1 2 3 21 21 H 1.09009 * 109.47026 * 25.13866 * 1 2 3 22 22 H 1.08989 * 109.47507 * 145.13525 * 1 2 3 23 23 H 0.97000 * 120.00384 * 179.97438 * 6 5 3 24 24 H 1.08997 * 109.47191 * 59.99755 * 13 11 2 25 25 H 1.08997 * 109.47080 * 299.99529 * 13 11 2 26 26 H 1.08997 * 109.47398 * 59.99842 * 14 13 11 27 27 H 1.09001 * 109.47199 * 299.99913 * 14 13 11 28 28 H 1.07994 * 122.75322 * 179.74577 * 17 16 15 29 29 H 1.08001 * 126.03780 * 180.26907 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.0659 1.2824 0.5651 5 6 1.6675 2.2684 -0.7272 6 7 2.0433 3.4890 -0.4177 7 14 0.4841 1.9866 -2.1447 8 1 -0.9112 2.1586 -1.6664 9 1 0.7617 2.9682 -3.2240 10 1 0.6608 0.6093 -2.6709 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0010 13 6 1.3853 -2.4722 0.0005 14 6 2.3795 -3.6352 0.0018 15 6 1.6261 -4.9403 0.0024 16 7 1.2622 -5.5834 -1.0552 17 6 0.6044 -6.7113 -0.8761 18 6 0.4117 -7.0430 0.4040 19 16 1.1362 -5.7867 1.4048 20 1 -0.3633 -0.0870 1.0240 21 1 -0.3633 0.9304 -0.4366 22 1 -0.3634 -0.8431 -0.5874 23 1 1.7064 4.2436 -0.9256 24 1 0.7590 -2.5302 -0.8896 25 1 0.7584 -2.5298 0.8903 26 1 3.0055 -3.5771 0.8922 27 1 3.0069 -3.5779 -0.8877 28 1 0.2537 -7.3197 -1.6965 29 1 -0.0980 -7.9253 0.7619 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330397721.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:54 Heat of formation + Delta-G solvation = 19.891683 kcal Electronic energy + Delta-G solvation = -14602.746009 eV Core-core repulsion = 12039.474001 eV Total energy + Delta-G solvation = -2563.272008 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.72747 -38.69975 -34.96348 -33.50609 -32.01513 -29.64769 -26.73781 -26.22066 -24.50329 -22.69743 -19.90997 -18.73867 -18.01160 -17.06080 -16.15024 -15.64974 -15.39222 -15.02032 -14.56193 -13.92222 -13.62873 -13.03664 -12.91734 -12.64640 -12.31809 -11.87775 -11.85267 -11.57903 -11.49225 -10.90385 -10.70615 -10.36262 -9.92061 -9.64948 -9.46639 -9.08485 -8.97863 -8.49568 -7.74714 -6.39413 -3.96525 0.64738 1.31010 1.70487 2.78674 3.03391 3.22779 3.27938 3.72104 4.07676 4.15829 4.51107 4.95021 5.04128 5.11367 5.32159 5.34290 5.44086 5.65649 5.75311 5.92972 6.00239 6.09852 6.26655 6.28718 6.32378 7.54078 7.71270 8.28071 8.50098 8.96078 9.31763 9.75952 10.72692 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.046560 B = 0.005535 C = 0.005304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.236065 B = 5057.676899 C = 5277.461273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.470 5.470 3 C -0.317 4.317 4 H 0.106 0.894 5 C 0.058 3.942 6 N -0.864 5.864 7 Si 0.880 3.120 8 H -0.276 1.276 9 H -0.288 1.288 10 H -0.264 1.264 11 C 0.465 3.535 12 O -0.566 6.566 13 C -0.129 4.129 14 C -0.029 4.029 15 C 0.068 3.932 16 N -0.479 5.479 17 C 0.041 3.959 18 C -0.272 4.272 19 S 0.115 5.885 20 H 0.052 0.948 21 H 0.066 0.934 22 H 0.054 0.946 23 H 0.274 0.726 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.094 0.906 27 H 0.103 0.897 28 H 0.173 0.827 29 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.224 -17.618 2.043 19.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.192 5.192 3 C -0.445 4.445 4 H 0.124 0.876 5 C -0.147 4.147 6 N -0.501 5.501 7 Si 0.708 3.292 8 H -0.203 1.203 9 H -0.214 1.214 10 H -0.188 1.188 11 C 0.253 3.747 12 O -0.448 6.448 13 C -0.171 4.171 14 C -0.070 4.070 15 C -0.210 4.210 16 N -0.193 5.193 17 C -0.111 4.111 18 C -0.411 4.411 19 S 0.369 5.631 20 H 0.071 0.929 21 H 0.084 0.916 22 H 0.073 0.927 23 H 0.084 0.916 24 H 0.105 0.895 25 H 0.100 0.900 26 H 0.112 0.888 27 H 0.121 0.879 28 H 0.190 0.810 29 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -6.382 -17.009 2.565 18.347 hybrid contribution -1.248 -0.597 -1.526 2.060 sum -7.630 -17.606 1.039 19.216 Atomic orbital electron populations 1.22010 0.83418 1.01620 1.01017 1.43675 1.04041 1.05750 1.65731 1.19066 1.10183 0.85438 1.29763 0.87638 1.25370 0.97479 0.94781 0.97095 1.69752 1.43914 0.98088 1.38318 0.86926 0.80156 0.79084 0.83081 1.20309 1.21442 1.18833 1.20097 0.88122 0.84577 0.81935 1.90562 1.13785 1.86995 1.53454 1.21608 0.98709 0.93219 1.03547 1.20054 0.96148 0.84898 1.05912 1.27394 1.01464 1.01638 0.90488 1.66335 1.13656 1.07666 1.31664 1.21835 0.98976 0.93986 0.96272 1.27041 1.11513 1.05862 0.96719 1.84092 1.50464 1.15218 1.13320 0.92936 0.91612 0.92702 0.91588 0.89506 0.90016 0.88777 0.87883 0.80957 0.80820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.24 8.78 59.85 0.53 1.76 15 2 N -0.47 -11.42 2.59 -122.19 -0.32 -11.74 15 3 C -0.32 -9.07 9.37 -14.93 -0.14 -9.21 15 4 H 0.11 3.37 7.90 -52.49 -0.41 2.96 15 5 C 0.06 1.63 5.29 -17.47 -0.09 1.54 15 6 N -0.86 -25.15 13.96 55.50 0.77 -24.38 15 7 Si 0.88 20.73 24.96 -169.99 -4.24 16.48 15 8 H -0.28 -6.01 6.69 56.52 0.38 -5.63 15 9 H -0.29 -6.82 7.11 56.52 0.40 -6.42 15 10 H -0.26 -6.19 7.11 56.52 0.40 -5.79 15 11 C 0.46 10.65 7.63 -10.99 -0.08 10.56 15 12 O -0.57 -14.99 15.85 5.55 0.09 -14.91 15 13 C -0.13 -2.17 4.30 -27.88 -0.12 -2.29 15 14 C -0.03 -0.45 5.09 -27.88 -0.14 -0.59 15 15 C 0.07 0.95 6.64 -13.46 -0.09 0.86 15 16 N -0.48 -6.96 10.54 -11.87 -0.13 -7.08 15 17 C 0.04 0.46 11.35 -19.18 -0.22 0.24 15 18 C -0.27 -2.67 11.37 29.12 0.33 -2.33 15 19 S 0.12 1.28 23.18 -107.50 -2.49 -1.22 15 20 H 0.05 0.90 8.14 -51.93 -0.42 0.48 15 21 H 0.07 1.37 3.42 -51.92 -0.18 1.19 15 22 H 0.05 0.90 6.64 -51.94 -0.34 0.56 15 23 H 0.27 7.35 8.31 -40.82 -0.34 7.01 15 24 H 0.09 1.41 7.41 -51.93 -0.38 1.02 15 25 H 0.08 1.19 8.11 -51.93 -0.42 0.77 15 26 H 0.09 1.42 8.10 -51.93 -0.42 1.00 15 27 H 0.10 1.74 8.10 -51.93 -0.42 1.32 15 28 H 0.17 1.47 8.06 -52.49 -0.42 1.05 15 29 H 0.17 1.16 8.06 -52.49 -0.42 0.74 15 LS Contribution 264.04 15.07 3.98 3.98 Total: -1.00 -32.69 264.04 -5.37 -38.07 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -3.01 Total: 0.25 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -0.03 Total: 0.53 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: 0.33 Total: -43.19 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: 0.09 Total: -14.91 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.24 Total: 16.48 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -2.49 Total: -1.22 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -32.69 -5.37 -38.07 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330397721.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.957 kcal (2) G-P(sol) polarization free energy of solvation -32.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds