Wall clock time and date at job start Sun Mar 29 2020 23:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99382 * 2 1 4 4 H 1.48500 * 109.47080 * 269.99918 * 3 2 1 5 5 H 1.48497 * 109.47248 * 30.00245 * 3 2 1 6 6 H 1.48503 * 109.46975 * 150.00445 * 3 2 1 7 7 C 1.37867 * 120.00421 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00344 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00017 * 179.97438 * 7 2 1 10 10 S 1.81405 * 109.47227 * 179.97438 * 9 7 2 11 11 C 1.81396 * 103.00203 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47360 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 10 14 14 C 1.38224 * 120.01147 * 99.99850 * 13 12 11 15 15 C 1.38218 * 120.02596 * 179.97438 * 14 13 12 16 16 C 1.38270 * 120.05109 * 0.02732 * 15 14 13 17 17 C 1.38170 * 120.02397 * 359.97438 * 16 15 14 18 18 C 1.38432 * 120.01370 * 279.72550 * 13 12 11 19 19 F 1.35102 * 120.02704 * 359.97438 * 18 13 12 20 20 H 0.97001 * 120.00543 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46929 * 60.00513 * 9 7 2 22 22 H 1.08992 * 109.47783 * 300.00228 * 9 7 2 23 23 H 1.09002 * 109.47134 * 59.99960 * 11 10 9 24 24 H 1.08998 * 109.46953 * 300.00697 * 11 10 9 25 25 H 1.09002 * 109.47153 * 59.99820 * 12 11 10 26 26 H 1.09001 * 109.46832 * 300.00011 * 12 11 10 27 27 H 1.08002 * 119.98697 * 359.97438 * 14 13 12 28 28 H 1.07999 * 119.97411 * 180.02562 * 15 14 13 29 29 H 1.07995 * 119.98601 * 179.97438 * 16 15 14 30 30 H 1.08004 * 120.01264 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1938 -0.0011 10 16 4.1164 -2.9041 -0.0010 11 6 5.9188 -2.6995 -0.0009 12 6 6.5882 -4.0753 -0.0014 13 6 8.0856 -3.9053 -0.0020 14 6 8.7965 -4.0340 1.1764 15 6 10.1700 -3.8787 1.1761 16 6 10.8343 -3.5939 -0.0026 17 6 10.1258 -3.4647 -1.1818 18 6 8.7503 -3.6258 -1.1837 19 9 8.0572 -3.5057 -2.3372 20 1 -0.4851 0.8400 0.0004 21 1 3.8752 -0.6802 0.8889 22 1 3.8746 -0.6798 -0.8910 23 1 6.2219 -2.1479 0.8890 24 1 6.2219 -2.1480 -0.8909 25 1 6.2851 -4.6265 -0.8916 26 1 6.2852 -4.6271 0.8884 27 1 8.2786 -4.2560 2.0977 28 1 10.7246 -3.9799 2.0972 29 1 11.9074 -3.4724 -0.0016 30 1 10.6449 -3.2419 -2.1023 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413009073.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:19:34 Heat of formation + Delta-G solvation = -38.873755 kcal Electronic energy + Delta-G solvation = -13959.925237 eV Core-core repulsion = 11374.185007 eV Total energy + Delta-G solvation = -2585.740230 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.068 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.93917 -39.25517 -34.27978 -33.03088 -30.77247 -29.49306 -29.27711 -24.31069 -22.94429 -22.44549 -21.10819 -17.68165 -16.91468 -16.59750 -16.14699 -15.70728 -15.28196 -14.45840 -14.31853 -14.16652 -13.73020 -13.33204 -12.96002 -12.83027 -12.60474 -12.27044 -12.06516 -11.85436 -11.24754 -11.03658 -10.78128 -10.37156 -10.03480 -9.63724 -9.14695 -8.97120 -8.78719 -8.70860 -6.80552 -6.17415 -4.19407 0.96395 1.00578 2.50539 3.21800 3.29051 3.30296 3.39961 3.68868 4.13159 4.31525 4.53212 4.61203 4.76914 4.99477 5.11236 5.13844 5.22894 5.26762 5.59519 5.73515 5.80839 5.88382 5.99608 6.16318 6.16909 6.27440 6.59555 6.70292 6.71339 7.43385 8.31192 8.85464 9.38446 10.94735 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.039259 B = 0.004729 C = 0.004635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.041473 B = 5919.877643 C = 6038.968583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.080 3.920 3 Si 0.878 3.122 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.514 4.514 8 H 0.084 0.916 9 C 0.049 3.951 10 S -0.270 6.270 11 C -0.092 4.092 12 C -0.062 4.062 13 C -0.107 4.107 14 C -0.088 4.088 15 C -0.131 4.131 16 C -0.099 4.099 17 C -0.155 4.155 18 C 0.102 3.898 19 F -0.134 7.134 20 H 0.268 0.732 21 H 0.034 0.966 22 H 0.030 0.970 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.134 0.866 28 H 0.128 0.872 29 H 0.130 0.870 30 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.039 -6.641 1.043 23.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.125 4.125 3 Si 0.704 3.296 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.553 4.553 8 H 0.102 0.898 9 C -0.099 4.099 10 S -0.043 6.043 11 C -0.240 4.240 12 C -0.100 4.100 13 C -0.110 4.110 14 C -0.106 4.106 15 C -0.149 4.149 16 C -0.117 4.117 17 C -0.174 4.174 18 C 0.082 3.918 19 F -0.113 7.113 20 H 0.078 0.922 21 H 0.052 0.948 22 H 0.048 0.952 23 H 0.092 0.908 24 H 0.091 0.909 25 H 0.103 0.897 26 H 0.105 0.895 27 H 0.152 0.848 28 H 0.146 0.854 29 H 0.148 0.852 30 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 21.240 -7.447 0.996 22.529 hybrid contribution 0.970 2.178 -0.265 2.399 sum 22.210 -5.269 0.731 22.838 Atomic orbital electron populations 1.69865 1.06128 1.27271 1.49664 1.24849 0.94749 0.98699 0.94162 0.86813 0.80292 0.83642 0.78834 1.19864 1.20760 1.19136 1.20495 0.86928 0.95331 1.52509 0.89791 1.21400 1.01057 0.88429 0.99024 1.86686 1.00446 1.19215 1.97959 1.23248 0.97201 0.99340 1.04258 1.20267 0.88377 0.96719 1.04621 1.20050 0.96751 1.01808 0.92352 1.21040 0.93999 0.98325 0.97210 1.21208 0.94446 1.00785 0.98434 1.20987 1.00056 0.98827 0.91857 1.21154 0.92277 1.03872 1.00082 1.17638 0.89906 1.02384 0.81857 1.91523 1.79412 1.93268 1.47060 0.92227 0.94761 0.95199 0.90780 0.90870 0.89742 0.89541 0.84820 0.85381 0.85226 0.84860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.27 13.96 55.43 0.77 -26.49 16 2 C 0.08 2.32 5.47 -17.82 -0.10 2.22 16 3 Si 0.88 21.33 27.47 -169.99 -4.67 16.66 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 7 C -0.51 -14.97 9.68 -34.44 -0.33 -15.30 16 8 H 0.08 2.68 7.96 -52.48 -0.42 2.26 16 9 C 0.05 1.21 4.77 36.01 0.17 1.38 16 10 S -0.27 -5.84 21.66 -107.50 -2.33 -8.17 16 11 C -0.09 -1.54 5.92 37.16 0.22 -1.32 16 12 C -0.06 -0.85 5.08 -27.88 -0.14 -0.99 16 13 C -0.11 -1.31 5.14 -104.55 -0.54 -1.85 16 14 C -0.09 -0.88 9.67 -39.59 -0.38 -1.27 16 15 C -0.13 -1.11 10.04 -39.58 -0.40 -1.51 16 16 C -0.10 -0.83 10.04 -39.59 -0.40 -1.23 16 17 C -0.16 -1.56 10.03 -39.52 -0.40 -1.96 16 18 C 0.10 1.27 7.24 -39.42 -0.29 0.99 16 19 F -0.13 -1.92 16.66 2.25 0.04 -1.88 16 20 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 21 H 0.03 0.84 7.20 -51.92 -0.37 0.46 16 22 H 0.03 0.73 7.57 -51.93 -0.39 0.33 16 23 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 24 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 25 H 0.08 1.21 7.94 -51.93 -0.41 0.80 16 26 H 0.09 1.10 8.01 -51.93 -0.42 0.68 16 27 H 0.13 1.13 8.04 -52.49 -0.42 0.71 16 28 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 29 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 30 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 LS Contribution 279.05 15.07 4.21 4.21 Total: -1.00 -31.12 279.05 -8.27 -39.39 By element: Atomic # 1 Polarization: 0.83 SS G_CDS: -3.71 Total: -2.89 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: -2.58 Total: -20.84 kcal Atomic # 7 Polarization: -27.27 SS G_CDS: 0.77 Total: -26.49 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Atomic # 16 Polarization: -5.84 SS G_CDS: -2.33 Total: -8.17 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.12 -8.27 -39.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413009073.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.520 kcal (2) G-P(sol) polarization free energy of solvation -31.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds