Wall clock time and date at job start Sun Mar 29 2020 23:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46495 * 119.99577 * 2 1 4 4 C 1.50701 * 109.47018 * 269.99398 * 3 2 1 5 5 O 1.21292 * 120.00198 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99785 * 179.97438 * 4 3 2 7 7 C 1.37104 * 119.99939 * 179.97438 * 6 4 3 8 8 H 1.08000 * 119.99662 * 0.02562 * 7 6 4 9 9 C 1.38946 * 119.99973 * 180.02562 * 7 6 4 10 10 N 1.31406 * 120.00164 * 0.02562 * 9 7 6 11 11 Si 1.86807 * 119.99812 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.46829 * 60.00418 * 11 9 7 13 13 H 1.48498 * 109.46880 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47176 * 300.00190 * 11 9 7 15 15 C 1.40778 * 120.00027 * 179.97438 * 2 1 3 16 16 C 1.38774 * 122.61228 * 359.97438 * 15 2 1 17 17 C 1.33414 * 114.88091 * 179.97438 * 16 15 2 18 18 S 1.75858 * 109.69057 * 359.73500 * 17 16 15 19 19 C 1.33752 * 122.60949 * 179.97438 * 15 2 1 20 20 H 1.08993 * 109.47468 * 270.00031 * 1 2 3 21 21 H 1.08997 * 109.47304 * 30.00367 * 1 2 3 22 22 H 1.09004 * 109.46934 * 149.99892 * 1 2 3 23 23 H 1.08999 * 109.47437 * 29.99628 * 3 2 1 24 24 H 1.09007 * 109.47071 * 149.99992 * 3 2 1 25 25 H 0.97003 * 120.00418 * 0.02562 * 6 4 3 26 26 H 0.97005 * 120.00237 * 179.97438 * 10 9 7 27 27 H 1.08001 * 122.55752 * 359.97438 * 16 15 2 28 28 H 1.07995 * 125.15319 * 179.97438 * 17 16 15 29 29 H 1.08002 * 125.19266 * 0.02562 * 19 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 8 2.0543 1.0213 -2.3428 6 7 3.1107 2.8515 -1.6671 7 6 3.3398 3.2470 -2.9597 8 1 2.9893 2.6389 -3.7806 9 6 4.0227 4.4301 -3.2136 10 7 4.4496 5.1697 -2.2148 11 14 4.3342 4.9693 -4.9748 12 1 3.0366 5.1468 -5.6749 13 1 5.0760 6.2557 -4.9748 14 1 5.1368 3.9343 -5.6748 15 6 2.1689 -1.2192 0.0005 16 6 1.5306 -2.4514 0.0016 17 6 2.3470 -3.5065 0.0015 18 16 4.0191 -2.9619 -0.0078 19 6 3.5051 -1.2801 0.0001 20 1 -0.3634 0.0000 1.0276 21 1 -0.3634 0.8899 -0.5139 22 1 -0.3633 -0.8900 -0.5139 23 1 1.6083 2.0284 0.5138 24 1 3.1499 1.1385 0.5139 25 1 3.4258 3.3975 -0.9298 26 1 4.9267 5.9955 -2.3920 27 1 0.4550 -2.5487 0.0025 28 1 2.0292 -4.5386 0.0026 29 1 4.1671 -0.4267 -0.0004 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602869708.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:23 Heat of formation + Delta-G solvation = 13.141630 kcal Electronic energy + Delta-G solvation = -14725.799908 eV Core-core repulsion = 12162.235196 eV Total energy + Delta-G solvation = -2563.564712 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.01435 -37.60725 -34.47378 -33.69621 -31.23780 -29.40213 -28.21198 -25.08606 -24.41236 -22.36234 -19.42067 -18.25989 -17.78312 -17.68222 -16.08241 -15.89819 -14.66780 -14.53242 -13.97024 -13.77664 -13.52589 -13.15253 -12.47913 -12.44676 -12.25457 -12.05180 -11.71467 -11.51433 -11.26894 -10.96688 -10.52320 -10.44290 -10.21823 -9.53293 -9.48261 -8.43350 -8.31389 -7.96438 -6.80263 -6.40640 -3.82258 1.39222 2.02076 2.34810 3.19907 3.22909 3.25664 3.30709 3.65546 3.89837 4.19793 5.07514 5.10554 5.24091 5.40495 5.50489 5.66998 5.70014 5.84751 5.95688 6.02105 6.14391 6.27070 6.42242 6.49970 7.55015 7.59239 7.77747 8.06548 8.62076 9.18474 9.54297 10.06239 10.76039 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.034979 B = 0.005774 C = 0.005388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.283203 B = 4848.500940 C = 5195.115581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.603 5.603 3 C 0.119 3.881 4 C 0.418 3.582 5 O -0.581 6.581 6 N -0.564 5.564 7 C -0.299 4.299 8 H 0.101 0.899 9 C 0.023 3.977 10 N -0.902 5.902 11 Si 0.930 3.070 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.274 1.274 15 C 0.202 3.798 16 C -0.157 4.157 17 C -0.196 4.196 18 S 0.081 5.919 19 C -0.307 4.307 20 H 0.040 0.960 21 H 0.065 0.935 22 H 0.060 0.940 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.392 0.608 26 H 0.272 0.728 27 H 0.138 0.862 28 H 0.161 0.839 29 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.936 -10.816 7.910 13.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.316 5.316 3 C -0.009 4.009 4 C 0.202 3.798 5 O -0.465 6.465 6 N -0.201 5.201 7 C -0.429 4.429 8 H 0.119 0.881 9 C -0.179 4.179 10 N -0.543 5.543 11 Si 0.757 3.243 12 H -0.199 1.199 13 H -0.209 1.209 14 H -0.199 1.199 15 C 0.093 3.907 16 C -0.192 4.192 17 C -0.332 4.332 18 S 0.340 5.660 19 C -0.449 4.449 20 H 0.059 0.941 21 H 0.084 0.916 22 H 0.079 0.921 23 H 0.106 0.894 24 H 0.104 0.896 25 H 0.225 0.775 26 H 0.082 0.918 27 H 0.155 0.845 28 H 0.179 0.821 29 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -2.818 -11.671 7.278 14.040 hybrid contribution -0.955 1.542 -0.584 1.905 sum -3.772 -10.129 6.694 12.714 Atomic orbital electron populations 1.21476 0.79723 1.02680 0.99713 1.45737 1.03979 1.01267 1.80613 1.21130 0.97825 0.85803 0.96142 1.20660 0.84472 0.83609 0.91029 1.90525 1.55241 1.55151 1.45614 1.41912 1.49554 1.19814 1.08825 1.19640 1.33584 1.05293 0.84380 0.88137 1.25245 0.96913 0.96127 0.99569 1.69598 1.38647 1.14832 1.31258 0.85937 0.78623 0.77758 0.82019 1.19948 1.20938 1.19898 1.16701 0.90285 0.86355 0.97367 1.19805 1.00923 0.90742 1.07722 1.25328 0.96277 1.02265 1.09314 1.83862 1.06820 0.99550 1.75722 1.24490 0.97120 0.99253 1.23994 0.94113 0.91649 0.92102 0.89430 0.89555 0.77488 0.91817 0.84452 0.82131 0.82536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.54 10.32 59.85 0.62 2.15 15 2 N -0.60 -10.41 2.53 -182.24 -0.46 -10.87 15 3 C 0.12 2.14 5.77 -5.20 -0.03 2.11 15 4 C 0.42 9.95 7.85 -10.98 -0.09 9.87 15 5 O -0.58 -16.17 16.01 5.55 0.09 -16.08 15 6 N -0.56 -14.34 5.29 -10.96 -0.06 -14.40 15 7 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 15 8 H 0.10 2.99 7.16 -52.49 -0.38 2.61 15 9 C 0.02 0.62 5.50 -17.47 -0.10 0.53 15 10 N -0.90 -24.60 13.05 55.50 0.72 -23.87 15 11 Si 0.93 21.27 29.55 -169.99 -5.02 16.25 15 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 15 13 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 14 H -0.27 -6.25 7.11 56.52 0.40 -5.85 15 15 C 0.20 3.47 6.47 -85.12 -0.55 2.92 15 16 C -0.16 -2.28 9.31 -41.07 -0.38 -2.66 15 17 C -0.20 -2.54 11.22 29.05 0.33 -2.21 15 18 S 0.08 1.15 23.33 -107.50 -2.51 -1.36 15 19 C -0.31 -5.29 10.25 29.16 0.30 -4.99 15 20 H 0.04 0.47 8.14 -51.93 -0.42 0.05 15 21 H 0.06 0.98 8.07 -51.93 -0.42 0.56 15 22 H 0.06 0.81 6.49 -51.93 -0.34 0.47 15 23 H 0.09 1.35 8.07 -51.93 -0.42 0.93 15 24 H 0.09 1.43 6.53 -51.93 -0.34 1.09 15 25 H 0.39 9.45 7.90 -40.82 -0.32 9.12 15 26 H 0.27 7.04 8.31 -40.82 -0.34 6.70 15 27 H 0.14 1.69 6.68 -52.49 -0.35 1.34 15 28 H 0.16 1.55 8.06 -52.49 -0.42 1.13 15 29 H 0.16 2.78 6.78 -52.49 -0.36 2.43 15 LS Contribution 269.64 15.07 4.06 4.06 Total: -1.00 -32.18 269.64 -6.12 -38.30 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -2.90 Total: 8.84 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -0.05 Total: -0.87 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: 0.21 Total: -49.14 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: 0.09 Total: -16.08 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -2.51 Total: -1.36 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -32.18 -6.12 -38.30 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602869708.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.437 kcal (2) G-P(sol) polarization free energy of solvation -32.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds