Wall clock time and date at job start Sun Mar 29 2020 23:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46495 * 119.99577 * 2 1 4 4 C 1.50701 * 109.47018 * 269.99398 * 3 2 1 5 5 O 1.21292 * 120.00198 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99785 * 179.97438 * 4 3 2 7 7 C 1.37104 * 119.99939 * 179.97438 * 6 4 3 8 8 H 1.08000 * 119.99662 * 0.02562 * 7 6 4 9 9 C 1.38946 * 119.99973 * 180.02562 * 7 6 4 10 10 N 1.31406 * 120.00164 * 0.02562 * 9 7 6 11 11 Si 1.86807 * 119.99812 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.46829 * 60.00418 * 11 9 7 13 13 H 1.48498 * 109.46880 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47176 * 300.00190 * 11 9 7 15 15 C 1.40778 * 120.00027 * 179.97438 * 2 1 3 16 16 C 1.38774 * 122.61228 * 359.97438 * 15 2 1 17 17 C 1.33414 * 114.88091 * 179.97438 * 16 15 2 18 18 S 1.75858 * 109.69057 * 359.73500 * 17 16 15 19 19 C 1.33752 * 122.60949 * 179.97438 * 15 2 1 20 20 H 1.08993 * 109.47468 * 270.00031 * 1 2 3 21 21 H 1.08997 * 109.47304 * 30.00367 * 1 2 3 22 22 H 1.09004 * 109.46934 * 149.99892 * 1 2 3 23 23 H 1.08999 * 109.47437 * 29.99628 * 3 2 1 24 24 H 1.09007 * 109.47071 * 149.99992 * 3 2 1 25 25 H 0.97003 * 120.00418 * 0.02562 * 6 4 3 26 26 H 0.97005 * 120.00237 * 179.97438 * 10 9 7 27 27 H 1.08001 * 122.55752 * 359.97438 * 16 15 2 28 28 H 1.07995 * 125.15319 * 179.97438 * 17 16 15 29 29 H 1.08002 * 125.19266 * 0.02562 * 19 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 8 2.0543 1.0213 -2.3428 6 7 3.1107 2.8515 -1.6671 7 6 3.3398 3.2470 -2.9597 8 1 2.9893 2.6389 -3.7806 9 6 4.0227 4.4301 -3.2136 10 7 4.4496 5.1697 -2.2148 11 14 4.3342 4.9693 -4.9748 12 1 3.0366 5.1468 -5.6749 13 1 5.0760 6.2557 -4.9748 14 1 5.1368 3.9343 -5.6748 15 6 2.1689 -1.2192 0.0005 16 6 1.5306 -2.4514 0.0016 17 6 2.3470 -3.5065 0.0015 18 16 4.0191 -2.9619 -0.0078 19 6 3.5051 -1.2801 0.0001 20 1 -0.3634 0.0000 1.0276 21 1 -0.3634 0.8899 -0.5139 22 1 -0.3633 -0.8900 -0.5139 23 1 1.6083 2.0284 0.5138 24 1 3.1499 1.1385 0.5139 25 1 3.4258 3.3975 -0.9298 26 1 4.9267 5.9955 -2.3920 27 1 0.4550 -2.5487 0.0025 28 1 2.0292 -4.5386 0.0026 29 1 4.1671 -0.4267 -0.0004 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602869708.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:23 Heat of formation + Delta-G solvation = -8.514665 kcal Electronic energy + Delta-G solvation = -14726.738996 eV Core-core repulsion = 12162.235196 eV Total energy + Delta-G solvation = -2564.503800 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.067 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.54976 -39.21334 -36.12097 -35.39086 -33.29389 -30.60448 -29.67609 -26.83538 -25.81578 -23.65814 -21.19272 -20.02812 -19.29400 -18.89320 -17.88327 -17.18777 -16.57051 -16.05746 -15.64816 -15.24297 -15.09599 -14.48626 -14.04413 -13.67283 -13.52915 -13.50900 -13.19827 -13.05561 -12.84849 -12.54254 -12.45733 -12.14595 -11.63457 -11.52541 -10.88213 -10.17297 -10.03275 -9.51034 -8.49584 -8.05271 -5.97329 0.26057 0.90812 1.19632 1.37110 1.39071 1.49972 2.01172 2.03048 2.26933 2.42368 3.17911 3.31562 4.02698 4.24209 4.31147 4.40625 4.43509 4.49144 4.75017 4.78710 4.89015 5.03632 5.22463 5.33298 5.38220 5.94561 6.31878 6.53709 6.59849 7.11044 7.54336 8.10196 8.68542 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.034979 B = 0.005774 C = 0.005388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.283203 B = 4848.500940 C = 5195.115581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.612 5.612 3 C 0.130 3.870 4 C 0.418 3.582 5 O -0.625 6.625 6 N -0.572 5.572 7 C -0.335 4.335 8 H 0.074 0.926 9 C -0.011 4.011 10 N -0.919 5.919 11 Si 0.991 3.009 12 H -0.272 1.272 13 H -0.268 1.268 14 H -0.274 1.274 15 C 0.187 3.813 16 C -0.176 4.176 17 C -0.175 4.175 18 S 0.096 5.904 19 C -0.346 4.346 20 H 0.073 0.927 21 H 0.052 0.948 22 H 0.069 0.931 23 H 0.118 0.882 24 H 0.100 0.900 25 H 0.397 0.603 26 H 0.278 0.722 27 H 0.160 0.840 28 H 0.200 0.800 29 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.468 -11.665 8.443 15.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.325 5.325 3 C 0.001 3.999 4 C 0.204 3.796 5 O -0.512 6.512 6 N -0.210 5.210 7 C -0.464 4.464 8 H 0.092 0.908 9 C -0.211 4.211 10 N -0.559 5.559 11 Si 0.814 3.186 12 H -0.197 1.197 13 H -0.192 1.192 14 H -0.199 1.199 15 C 0.078 3.922 16 C -0.210 4.210 17 C -0.311 4.311 18 S 0.355 5.645 19 C -0.488 4.488 20 H 0.091 0.909 21 H 0.071 0.929 22 H 0.087 0.913 23 H 0.136 0.864 24 H 0.118 0.882 25 H 0.231 0.769 26 H 0.088 0.912 27 H 0.178 0.822 28 H 0.217 0.783 29 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.353 -12.521 7.846 15.152 hybrid contribution -0.794 1.729 -0.727 2.037 sum -4.148 -10.792 7.118 13.577 Atomic orbital electron populations 1.21657 0.78113 1.02496 1.01663 1.45970 1.05113 1.00962 1.80497 1.21064 0.99488 0.87222 0.92099 1.21781 0.82400 0.82243 0.93189 1.90484 1.56620 1.56196 1.47868 1.41978 1.50204 1.20649 1.08159 1.19581 1.35575 1.06213 0.85072 0.90755 1.26007 0.95983 0.95540 1.03545 1.69656 1.38428 1.15036 1.32825 0.85028 0.78550 0.77739 0.77258 1.19687 1.19244 1.19923 1.17150 0.90544 0.87321 0.97214 1.20018 1.02303 0.89885 1.08783 1.25827 0.95026 1.03796 1.06432 1.83747 1.07897 0.97390 1.75452 1.24596 0.97505 1.00697 1.25978 0.90909 0.92914 0.91275 0.86402 0.88195 0.76917 0.91225 0.82228 0.78288 0.84324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.77 10.32 127.77 1.32 4.09 15 2 N -0.61 -20.57 2.53 -730.47 -1.85 -22.41 15 3 C 0.13 4.61 5.77 85.63 0.49 5.10 15 4 C 0.42 20.29 7.85 87.66 0.69 20.98 15 5 O -0.63 -35.75 16.01 -3.07 -0.05 -35.80 15 6 N -0.57 -29.80 5.29 -306.98 -1.62 -31.42 15 7 C -0.33 -19.36 9.68 84.04 0.81 -18.54 15 8 H 0.07 4.61 7.16 -2.91 -0.02 4.59 15 9 C -0.01 -0.58 5.50 84.93 0.47 -0.12 15 10 N -0.92 -49.92 13.05 21.66 0.28 -49.64 15 11 Si 0.99 43.53 29.55 68.60 2.03 45.56 15 12 H -0.27 -11.78 7.11 99.48 0.71 -11.07 15 13 H -0.27 -11.02 7.11 99.48 0.71 -10.31 15 14 H -0.27 -11.99 7.11 99.48 0.71 -11.28 15 15 C 0.19 6.26 6.47 36.81 0.24 6.50 15 16 C -0.18 -4.71 9.31 21.31 0.20 -4.51 15 17 C -0.18 -4.01 11.22 66.73 0.75 -3.27 15 18 S 0.10 2.60 23.33 -56.49 -1.32 1.28 15 19 C -0.35 -11.95 10.25 66.80 0.68 -11.27 15 20 H 0.07 1.48 8.14 -2.39 -0.02 1.46 15 21 H 0.05 1.52 8.07 -2.39 -0.02 1.50 15 22 H 0.07 1.71 6.49 -2.38 -0.02 1.69 15 23 H 0.12 3.47 8.07 -2.39 -0.02 3.45 15 24 H 0.10 3.29 6.53 -2.38 -0.02 3.28 15 25 H 0.40 19.47 7.90 -92.71 -0.73 18.74 15 26 H 0.28 14.17 8.31 -92.70 -0.77 13.40 15 27 H 0.16 3.44 6.68 -2.91 -0.02 3.42 15 28 H 0.20 2.93 8.06 -2.91 -0.02 2.91 15 29 H 0.14 5.13 6.78 -2.91 -0.02 5.11 15 Total: -1.00 -70.17 269.64 3.57 -66.59 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: 0.45 Total: 26.89 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: 5.65 Total: -1.04 kcal Atomic # 7 Polarization: -100.29 SS G_CDS: -3.19 Total: -103.47 kcal Atomic # 8 Polarization: -35.75 SS G_CDS: -0.05 Total: -35.80 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: 2.60 SS G_CDS: -1.32 Total: 1.28 kcal Total: -70.17 3.57 -66.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602869708.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.078 kcal (2) G-P(sol) polarization free energy of solvation -70.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds