Wall clock time and date at job start Sun Mar 29 2020 23:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.28450 * 125.19401 * 2 1 4 4 C 1.30902 * 110.95531 * 180.27866 * 3 2 1 5 5 C 1.39601 * 107.89548 * 359.71134 * 4 3 2 6 6 N 1.48012 * 127.32655 * 179.97438 * 5 4 3 7 7 O 1.31704 * 120.00117 * 0.02562 * 6 5 4 8 8 O 1.31707 * 120.00224 * 180.02562 * 6 5 4 9 9 C 1.36677 * 125.20270 * 179.78189 * 2 1 3 10 10 C 1.46950 * 126.90459 * 0.02562 * 9 2 1 11 11 O 1.21561 * 119.99803 * 99.24373 * 10 9 2 12 12 N 1.34776 * 119.99937 * 279.25317 * 10 9 2 13 13 C 1.33278 * 119.99573 * 174.83780 * 12 10 9 14 14 H 1.07992 * 120.00209 * 0.02562 * 13 12 10 15 15 C 1.46794 * 119.99415 * 179.71933 * 13 12 10 16 16 N 1.29315 * 120.00169 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99672 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47061 * 90.00444 * 17 15 13 19 19 H 1.48498 * 109.47016 * 210.00324 * 17 15 13 20 20 H 1.48501 * 109.46996 * 330.00109 * 17 15 13 21 21 H 1.08995 * 109.47068 * 275.13069 * 1 2 3 22 22 H 1.08996 * 109.47017 * 35.13584 * 1 2 3 23 23 H 1.09003 * 109.46565 * 155.13595 * 1 2 3 24 24 H 1.08002 * 126.04915 * 179.74708 * 4 3 2 25 25 H 0.96995 * 119.99895 * 354.83572 * 12 10 9 26 26 H 0.97005 * 119.99665 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2054 1.0497 0.0000 4 6 3.4742 0.7277 -0.0059 5 6 3.5632 -0.6654 -0.0035 6 7 4.7950 -1.4860 -0.0088 7 8 5.9754 -0.9019 -0.0162 8 8 4.7108 -2.8004 -0.0060 9 6 2.2529 -1.1168 0.0043 10 6 1.8015 -2.5152 0.0090 11 8 1.7760 -3.1492 -1.0278 12 7 1.4154 -3.0947 1.1630 13 6 0.9093 -4.3276 1.1527 14 1 0.8089 -4.8624 0.2199 15 6 0.4945 -4.9612 2.4103 16 7 0.6198 -4.3228 3.5279 17 14 -0.2142 -6.6895 2.3960 18 1 0.8846 -7.6763 2.5503 19 1 -1.1754 -6.8396 3.5180 20 1 -0.9153 -6.9264 1.1085 21 1 -0.3633 0.0919 1.0235 22 1 -0.3633 0.8404 -0.5914 23 1 -0.3632 -0.9325 -0.4321 24 1 4.3050 1.4178 -0.0112 25 1 1.5059 -2.6145 2.0009 26 1 0.3453 -4.7414 4.3589 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136559727.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:00 Heat of formation + Delta-G solvation = 53.306322 kcal Electronic energy + Delta-G solvation = -16962.961468 eV Core-core repulsion = 13854.845213 eV Total energy + Delta-G solvation = -3108.116255 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.069 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -44.27903 -40.20087 -39.82327 -36.28442 -35.50383 -34.93575 -33.96187 -32.71692 -29.34978 -27.53727 -26.92813 -23.95473 -22.94870 -21.39261 -20.55846 -19.66861 -18.99322 -18.39245 -17.89797 -17.05622 -16.71693 -16.67242 -16.02094 -15.57867 -15.38203 -14.49756 -13.99916 -13.86474 -13.84854 -13.04660 -12.74261 -12.59919 -12.55597 -12.18248 -12.11020 -11.89221 -11.73500 -11.11059 -10.89337 -10.67526 -10.51408 -8.83593 -5.96236 -1.71294 -0.16162 0.11323 0.88341 0.99343 1.29518 1.41447 1.52587 1.72707 2.18048 2.57271 2.84922 2.87538 3.45324 3.51696 3.92927 4.12845 4.16911 4.33766 4.46918 4.78556 5.02452 5.06532 5.56184 5.63656 6.25210 6.30097 6.83334 7.17429 7.81468 8.30165 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.026639 B = 0.008060 C = 0.006913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.822384 B = 3473.276830 C = 4049.526869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.244 5.244 3 N -0.262 5.262 4 C 0.101 3.899 5 C -0.127 4.127 6 N 0.029 4.971 7 O -0.133 6.133 8 O -0.262 6.262 9 C 0.108 3.892 10 C 0.442 3.558 11 O -0.618 6.618 12 N -0.488 5.488 13 C -0.382 4.382 14 H 0.092 0.908 15 C 0.018 3.982 16 N -0.858 5.858 17 Si 1.003 2.997 18 H -0.270 1.270 19 H -0.257 1.257 20 H -0.263 1.263 21 H 0.120 0.880 22 H 0.144 0.856 23 H 0.095 0.905 24 H 0.253 0.747 25 H 0.392 0.608 26 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.220 10.465 -0.056 10.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.029 5.029 3 N -0.090 5.090 4 C -0.080 4.080 5 C -0.229 4.229 6 N 0.499 4.501 7 O -0.340 6.340 8 O -0.429 6.429 9 C -0.032 4.032 10 C 0.229 3.771 11 O -0.507 6.507 12 N -0.116 5.116 13 C -0.513 4.513 14 H 0.110 0.890 15 C -0.195 4.195 16 N -0.491 5.491 17 Si 0.824 3.176 18 H -0.196 1.196 19 H -0.181 1.181 20 H -0.187 1.187 21 H 0.138 0.862 22 H 0.162 0.838 23 H 0.113 0.887 24 H 0.269 0.731 25 H 0.226 0.774 26 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.859 11.119 -0.470 12.143 hybrid contribution 0.979 -1.601 0.421 1.923 sum -3.880 9.518 -0.049 10.278 Atomic orbital electron populations 1.22930 0.68462 1.07559 1.07781 1.46397 1.09814 1.00356 1.46292 1.73505 1.02084 1.12290 1.21152 1.24274 0.95642 0.89761 0.98349 1.20903 0.82396 0.92808 1.26783 1.49415 1.02744 1.02956 0.94996 1.96144 1.10539 1.74519 1.52771 1.96452 1.95858 0.88854 1.61775 1.21860 0.90340 0.91565 0.99385 1.16215 0.90756 0.84599 0.85489 1.90639 1.62794 1.63934 1.33329 1.40629 1.48994 1.14940 1.07063 1.20664 1.42330 0.93427 0.94851 0.88967 1.27783 0.95181 1.03820 0.92688 1.68654 1.39449 1.40955 1.00070 0.84803 0.78391 0.75242 0.79191 1.19559 1.18143 1.18711 0.86204 0.83801 0.88678 0.73077 0.77395 0.88865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.46 11.22 127.77 1.43 2.89 15 2 N -0.24 -7.29 3.75 -356.02 -1.34 -8.63 15 3 N -0.26 -6.99 11.90 -57.17 -0.68 -7.67 15 4 C 0.10 2.72 11.85 85.16 1.01 3.73 15 5 C -0.13 -4.85 7.37 36.79 0.27 -4.58 15 6 N 0.03 1.26 4.98 -45.49 -0.23 1.03 15 7 O -0.13 -5.16 19.83 3.51 0.07 -5.09 15 8 O -0.26 -13.93 18.75 3.50 0.07 -13.87 15 9 C 0.11 4.34 6.71 40.76 0.27 4.61 15 10 C 0.44 22.15 5.72 86.53 0.49 22.64 15 11 O -0.62 -36.28 16.64 -3.91 -0.07 -36.34 15 12 N -0.49 -24.70 5.16 -306.46 -1.58 -26.28 15 13 C -0.38 -20.60 9.92 86.71 0.86 -19.74 15 14 H 0.09 5.36 7.20 -2.91 -0.02 5.34 15 15 C 0.02 0.86 5.70 87.30 0.50 1.36 15 16 N -0.86 -41.26 13.09 23.26 0.30 -40.95 15 17 Si 1.00 38.27 29.65 68.60 2.03 40.30 15 18 H -0.27 -10.36 7.11 99.48 0.71 -9.66 15 19 H -0.26 -8.89 7.11 99.48 0.71 -8.18 15 20 H -0.26 -10.09 7.11 99.48 0.71 -9.38 15 21 H 0.12 2.03 8.14 -2.39 -0.02 2.01 15 22 H 0.14 1.89 8.14 -2.39 -0.02 1.87 15 23 H 0.09 2.32 7.66 -2.39 -0.02 2.31 15 24 H 0.25 4.31 8.06 -2.91 -0.02 4.29 15 25 H 0.39 18.95 7.97 -92.71 -0.74 18.21 15 26 H 0.30 12.98 8.26 -92.70 -0.77 12.21 15 Total: -1.00 -71.52 258.98 3.94 -67.59 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 0.51 Total: 19.01 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: 4.84 Total: 10.91 kcal Atomic # 7 Polarization: -78.99 SS G_CDS: -3.52 Total: -82.51 kcal Atomic # 8 Polarization: -55.38 SS G_CDS: 0.07 Total: -55.30 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 2.03 Total: 40.30 kcal Total: -71.52 3.94 -67.59 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136559727.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.894 kcal (2) G-P(sol) polarization free energy of solvation -71.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds