Wall clock time and date at job start Sun Mar 29 2020 22:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35305 * 117.00142 * 2 1 4 4 N 1.32794 * 119.99061 * 359.97438 * 3 2 1 5 5 C 1.32811 * 120.03859 * 179.97438 * 4 3 2 6 6 O 1.35296 * 119.98929 * 179.97438 * 5 4 3 7 7 C 1.34904 * 118.00289 * 0.02562 * 6 5 4 8 8 H 1.07996 * 119.99794 * 359.97438 * 7 6 5 9 9 C 1.38689 * 120.00007 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99852 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 119.99815 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47349 * 60.00452 * 11 9 7 13 13 H 1.48505 * 109.47093 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47489 * 300.00028 * 11 9 7 15 15 N 1.32778 * 120.01544 * 359.74574 * 5 4 3 16 16 C 1.32929 * 119.97037 * 0.52730 * 15 5 4 17 17 N 1.38005 * 120.01632 * 179.75392 * 16 15 5 18 18 C 1.46506 * 120.00065 * 179.72377 * 17 16 15 19 19 C 1.46499 * 119.99940 * 359.44254 * 17 16 15 20 20 N 1.32717 * 119.98839 * 179.97438 * 3 2 1 21 21 H 1.08991 * 109.47462 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46821 * 300.00296 * 1 2 3 23 23 H 1.09005 * 109.46579 * 59.99523 * 1 2 3 24 24 H 0.96999 * 119.99432 * 179.97438 * 10 9 7 25 25 H 1.08999 * 109.46892 * 269.72275 * 18 17 16 26 26 H 1.09000 * 109.46803 * 29.71448 * 18 17 16 27 27 H 1.09000 * 109.47214 * 149.72241 * 18 17 16 28 28 H 1.09003 * 109.47269 * 270.27471 * 19 17 16 29 29 H 1.08994 * 109.47173 * 30.28290 * 19 17 16 30 30 H 1.09005 * 109.47077 * 150.28461 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0433 1.2056 0.0000 4 7 1.3199 2.3192 -0.0005 5 6 1.9219 3.5030 0.0000 6 8 1.1839 4.6370 -0.0010 7 6 -0.1599 4.5181 -0.0021 8 1 -0.6153 3.5389 -0.0025 9 6 -0.9564 5.6534 -0.0026 10 7 -0.4017 6.8459 -0.0027 11 14 -2.8171 5.4888 -0.0048 12 1 -3.2499 4.7476 1.2070 13 1 -3.4336 6.8398 -0.0057 14 1 -3.2472 4.7482 -1.2179 15 7 3.2478 3.5739 0.0061 16 6 3.9724 2.4595 0.0012 17 7 5.3506 2.5322 0.0024 18 6 6.1489 1.3037 0.0030 19 6 6.0153 3.8377 -0.0032 20 7 3.3687 1.2747 0.0005 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.9589 7.6399 -0.0034 25 1 6.3501 1.0018 1.0308 26 1 5.5989 0.5128 -0.5069 27 1 7.0915 1.4827 -0.5143 28 1 6.1769 4.1588 -1.0322 29 1 5.3887 4.5666 0.5108 30 1 6.9749 3.7590 0.5078 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002601430.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:26 Heat of formation + Delta-G solvation = 3.977392 kcal Electronic energy + Delta-G solvation = -17146.507568 eV Core-core repulsion = 14172.085344 eV Total energy + Delta-G solvation = -2974.422223 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.49538 -39.97735 -39.54486 -37.43686 -34.65227 -33.69833 -33.33816 -29.16281 -28.66182 -27.66666 -26.72055 -24.83975 -23.14008 -20.84140 -20.06025 -19.06359 -18.02219 -17.76563 -17.29581 -16.38857 -16.27384 -15.83565 -15.73958 -15.45305 -14.98859 -14.85233 -14.21041 -13.69507 -13.36895 -13.17275 -12.93922 -12.82818 -12.81953 -12.63121 -12.21693 -12.15567 -11.61366 -10.93934 -10.49654 -10.49084 -10.38360 -9.26982 -8.60316 -6.35021 0.25956 0.35537 1.16341 1.35038 1.48130 1.52759 1.81267 2.15125 2.51669 2.75612 3.13967 3.24165 3.81487 4.25642 4.40234 4.44906 4.46786 4.56091 4.63799 4.80603 4.82927 4.98552 5.03227 5.17307 5.47923 5.50467 5.78159 6.15159 6.21819 6.28149 6.82659 7.24162 7.72625 8.60825 Molecular weight = 240.10amu Principal moments of inertia in cm(-1) A = 0.025541 B = 0.007738 C = 0.005972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.032874 B = 3617.513151 C = 4687.795705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.291 6.291 3 C 0.576 3.424 4 N -0.684 5.684 5 C 0.542 3.458 6 O -0.180 6.180 7 C -0.405 4.405 8 H 0.112 0.888 9 C -0.012 4.012 10 N -0.907 5.907 11 Si 1.033 2.967 12 H -0.255 1.255 13 H -0.266 1.266 14 H -0.255 1.255 15 N -0.658 5.658 16 C 0.627 3.373 17 N -0.577 5.577 18 C 0.101 3.899 19 C 0.100 3.900 20 N -0.648 5.648 21 H 0.147 0.853 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.280 0.720 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.107 0.893 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.270 -10.741 -0.020 12.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.190 6.190 3 C 0.265 3.735 4 N -0.446 5.446 5 C 0.239 3.761 6 O -0.065 6.065 7 C -0.482 4.482 8 H 0.129 0.871 9 C -0.212 4.212 10 N -0.542 5.542 11 Si 0.850 3.150 12 H -0.179 1.179 13 H -0.190 1.190 14 H -0.179 1.179 15 N -0.411 5.411 16 C 0.265 3.735 17 N -0.296 5.296 18 C -0.040 4.040 19 C -0.042 4.042 20 N -0.400 5.400 21 H 0.165 0.835 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.125 0.875 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 6.397 -10.369 -0.013 12.184 hybrid contribution -0.965 0.407 -0.005 1.048 sum 5.431 -9.963 -0.018 11.347 Atomic orbital electron populations 1.23269 0.73857 1.05548 1.02641 1.86000 1.25191 1.21347 1.86492 1.20390 0.85447 0.84759 0.82907 1.68279 1.41620 0.98760 1.35907 1.20566 0.85561 0.84426 0.85587 1.83830 1.21817 1.24213 1.76644 1.21930 0.75697 0.96512 1.54091 0.87092 1.26849 1.06653 0.93048 0.94642 1.70184 1.39146 0.98785 1.46129 0.84473 0.71674 0.78617 0.80245 1.17869 1.19038 1.17879 1.67577 1.04817 1.32391 1.36320 1.19000 0.88278 0.81999 0.84263 1.46180 0.97896 1.10140 1.75358 1.21882 0.95049 0.84232 1.02841 1.21827 0.97767 0.81979 1.02584 1.67586 1.08375 1.27530 1.36520 0.83492 0.92610 0.92603 0.91025 0.91824 0.91276 0.87495 0.92179 0.92526 0.86970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.19 10.39 113.37 1.18 2.37 16 2 O -0.29 -10.75 10.55 -85.92 -0.91 -11.66 16 3 C 0.58 25.67 8.55 180.30 1.54 27.21 16 4 N -0.68 -34.42 7.80 -430.95 -3.36 -37.78 16 5 C 0.54 30.13 8.52 180.28 1.54 31.67 16 6 O -0.18 -11.25 9.75 -18.56 -0.18 -11.43 16 7 C -0.40 -23.94 9.69 67.93 0.66 -23.29 16 8 H 0.11 6.22 6.81 -2.91 -0.02 6.20 16 9 C -0.01 -0.65 5.49 84.85 0.47 -0.18 16 10 N -0.91 -54.38 13.67 21.62 0.30 -54.08 16 11 Si 1.03 41.81 29.55 68.60 2.03 43.84 16 12 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 13 H -0.27 -10.16 7.11 99.48 0.71 -9.46 16 14 H -0.25 -9.68 7.11 99.48 0.71 -8.98 16 15 N -0.66 -33.29 9.28 -315.79 -2.93 -36.22 16 16 C 0.63 26.82 8.19 261.27 2.14 28.96 16 17 N -0.58 -18.19 3.36 -760.59 -2.56 -20.75 16 18 C 0.10 2.21 10.46 127.77 1.34 3.55 16 19 C 0.10 2.58 10.45 127.77 1.34 3.92 16 20 N -0.65 -27.77 9.27 -315.87 -2.93 -30.70 16 21 H 0.15 2.69 8.14 -2.39 -0.02 2.67 16 22 H 0.06 1.70 8.11 -2.39 -0.02 1.68 16 23 H 0.06 1.70 8.11 -2.38 -0.02 1.68 16 24 H 0.28 15.24 8.31 -92.71 -0.77 14.46 16 25 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.07 1.73 7.36 -2.39 -0.02 1.71 16 27 H 0.11 1.49 8.07 -2.39 -0.02 1.47 16 28 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.06 1.82 7.36 -2.39 -0.02 1.80 16 30 H 0.11 1.85 8.07 -2.38 -0.02 1.83 16 Total: -1.00 -76.61 272.92 0.81 -75.80 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: 1.16 Total: 8.77 kcal Atomic # 6 Polarization: 64.01 SS G_CDS: 10.19 Total: 74.21 kcal Atomic # 7 Polarization: -168.04 SS G_CDS: -11.48 Total: -179.53 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -1.09 Total: -23.08 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -76.61 0.81 -75.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002601430.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.775 kcal (2) G-P(sol) polarization free energy of solvation -76.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds