Wall clock time and date at job start Sun Mar 29 2020 23:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.29023 * 124.91372 * 2 1 4 4 C 1.31784 * 117.12236 * 179.97438 * 3 2 1 5 5 C 1.50706 * 122.74680 * 180.02562 * 4 3 2 6 6 C 1.33639 * 114.50230 * 0.02562 * 4 3 2 7 7 C 1.50692 * 126.03962 * 180.02562 * 6 4 3 8 8 N 1.46900 * 109.47117 * 89.99977 * 7 6 4 9 9 C 1.46901 * 111.00252 * 293.95625 * 8 7 6 10 10 C 1.46901 * 111.00175 * 170.00171 * 8 7 6 11 11 C 1.50697 * 109.47181 * 190.00219 * 10 8 7 12 12 H 1.07997 * 120.00007 * 0.02562 * 11 10 8 13 13 C 1.37878 * 119.99955 * 179.97438 * 11 10 8 14 14 N 1.31515 * 119.99794 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00013 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47099 * 60.00217 * 15 13 11 17 17 H 1.48505 * 109.47052 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.46948 * 300.00079 * 15 13 11 19 19 S 1.70979 * 124.91513 * 180.02562 * 2 1 3 20 20 H 1.08998 * 109.47086 * 90.02626 * 1 2 3 21 21 H 1.09006 * 109.46552 * 210.01924 * 1 2 3 22 22 H 1.08997 * 109.47102 * 330.01872 * 1 2 3 23 23 H 1.08990 * 109.47046 * 89.98073 * 5 4 3 24 24 H 1.09001 * 109.46722 * 209.97899 * 5 4 3 25 25 H 1.09004 * 109.46932 * 329.97719 * 5 4 3 26 26 H 1.08997 * 109.47504 * 210.00277 * 7 6 4 27 27 H 1.09000 * 109.47266 * 330.00453 * 7 6 4 28 28 H 1.08998 * 109.46618 * 59.99539 * 9 8 7 29 29 H 1.08999 * 109.47067 * 179.97438 * 9 8 7 30 30 H 1.08997 * 109.46931 * 299.99595 * 9 8 7 31 31 H 1.09003 * 109.46801 * 310.00221 * 10 8 7 32 32 H 1.08994 * 109.47184 * 70.00069 * 10 8 7 33 33 H 0.97002 * 119.99905 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8794 0.0005 5 6 4.5307 2.0247 0.0012 6 6 3.9355 -0.4006 0.0004 7 6 5.3575 -0.8994 0.0015 8 7 5.8184 -1.0619 1.3868 9 6 5.9028 0.2362 2.0693 10 6 7.1067 -1.7661 1.4339 11 6 7.4278 -2.1312 2.8603 12 1 6.7431 -1.8669 3.6526 13 6 8.5952 -2.8036 3.1537 14 7 9.4287 -3.1258 2.1888 15 14 8.9930 -3.2567 4.9217 16 1 7.9261 -4.1393 5.4585 17 1 10.2954 -3.9685 4.9693 18 1 9.0739 -2.0220 5.7430 19 16 2.4857 -1.4020 -0.0006 20 1 -0.3633 -0.0005 -1.0276 21 1 -0.3633 -0.8899 0.5142 22 1 -0.3633 0.8901 0.5135 23 1 4.7662 2.3008 1.0289 24 1 5.4436 1.7223 -0.5120 25 1 4.0909 2.8792 -0.5131 26 1 5.4063 -1.8592 -0.5126 27 1 5.9954 -0.1796 -0.5115 28 1 4.9189 0.7052 2.0810 29 1 6.2459 0.0868 3.0931 30 1 6.6058 0.8797 1.5404 31 1 7.0475 -2.6725 0.8314 32 1 7.8895 -1.1183 1.0396 33 1 10.2502 -3.5985 2.3953 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083219090.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:58 Heat of formation + Delta-G solvation = 19.347305 kcal Electronic energy + Delta-G solvation = -14966.196654 eV Core-core repulsion = 12538.734135 eV Total energy + Delta-G solvation = -2427.462520 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 240.099 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.01656 -38.36216 -34.97301 -33.80017 -30.74965 -30.17095 -28.94464 -27.02912 -25.01344 -23.63587 -22.28980 -19.70332 -18.80960 -18.47959 -16.99786 -16.52637 -16.17607 -15.76311 -15.47208 -14.91249 -14.38184 -14.11076 -14.02529 -13.79420 -13.61782 -13.17885 -13.11963 -12.93707 -12.81598 -12.66385 -12.56296 -12.22623 -12.01178 -11.87063 -11.37024 -10.62170 -10.57315 -10.19396 -9.54440 -9.05798 -8.20959 -6.31014 -0.24151 0.43240 0.85670 1.41442 1.44191 1.52201 1.77773 2.40399 3.11676 3.18355 3.37592 3.90421 4.04429 4.14005 4.37109 4.47205 4.57016 4.59673 4.66763 4.69752 4.73270 4.84592 4.96561 5.05088 5.13441 5.16033 5.25317 5.38756 5.62733 6.01258 6.26083 6.53967 6.78666 6.83758 7.38469 8.89738 Molecular weight = 240.10amu Principal moments of inertia in cm(-1) A = 0.039189 B = 0.005509 C = 0.005289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.310932 B = 5081.575766 C = 5292.357621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.039 3.961 3 N -0.497 5.497 4 C 0.056 3.944 5 C -0.078 4.078 6 C -0.223 4.223 7 C 0.132 3.868 8 N -0.544 5.544 9 C 0.043 3.957 10 C 0.209 3.791 11 C -0.525 4.525 12 H 0.061 0.939 13 C 0.005 3.995 14 N -0.933 5.933 15 Si 0.968 3.032 16 H -0.270 1.270 17 H -0.282 1.282 18 H -0.268 1.268 19 S 0.139 5.861 20 H 0.103 0.897 21 H 0.098 0.902 22 H 0.093 0.907 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.022 0.978 31 H 0.006 0.994 32 H -0.031 1.031 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.278 6.622 -5.076 17.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.238 4.238 3 N -0.213 5.213 4 C -0.076 4.076 5 C -0.137 4.137 6 C -0.344 4.344 7 C 0.002 3.998 8 N -0.268 5.268 9 C -0.105 4.105 10 C 0.083 3.917 11 C -0.563 4.563 12 H 0.079 0.921 13 C -0.193 4.193 14 N -0.573 5.573 15 Si 0.792 3.208 16 H -0.195 1.195 17 H -0.207 1.207 18 H -0.193 1.193 19 S 0.395 5.605 20 H 0.121 0.879 21 H 0.117 0.883 22 H 0.111 0.889 23 H 0.098 0.902 24 H 0.093 0.907 25 H 0.102 0.898 26 H 0.092 0.908 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.040 0.960 31 H 0.025 0.975 32 H -0.013 1.013 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.942 5.663 -4.868 17.604 hybrid contribution 1.892 0.698 0.268 2.034 sum -14.050 6.361 -4.600 16.094 Atomic orbital electron populations 1.20611 0.82378 1.05235 1.05181 1.27656 1.03170 0.90808 1.02210 1.66199 1.04442 1.32622 1.18028 1.20378 0.90659 0.94312 1.02259 1.20523 0.95607 0.94280 1.03326 1.25544 0.99868 0.96053 1.12943 1.20307 0.88496 1.00101 0.90848 1.62065 1.30750 1.20533 1.13465 1.22308 0.99813 0.89277 0.99116 1.19403 0.83802 0.91901 0.96640 1.21392 1.04760 1.36660 0.93511 0.92122 1.25864 0.95905 0.95613 1.01948 1.70067 1.11896 1.41235 1.34106 0.85461 0.77379 0.78635 0.79290 1.19480 1.20720 1.19278 1.83873 0.96690 1.12012 1.67971 0.87892 0.88336 0.88872 0.90224 0.90727 0.89822 0.90808 0.92852 0.91474 0.92573 0.95990 0.97548 1.01288 0.92614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.14 10.46 71.24 0.75 -0.39 16 2 C 0.04 1.00 7.39 88.52 0.65 1.65 16 3 N -0.50 -14.84 10.53 -179.39 -1.89 -16.73 16 4 C 0.06 1.74 5.89 41.52 0.24 1.98 16 5 C -0.08 -2.05 8.78 71.24 0.63 -1.43 16 6 C -0.22 -7.31 5.50 24.64 0.14 -7.17 16 7 C 0.13 4.89 5.22 85.55 0.45 5.34 16 8 N -0.54 -23.93 4.74 -931.68 -4.42 -28.35 16 9 C 0.04 1.70 7.88 127.69 1.01 2.70 16 10 C 0.21 11.10 4.72 85.56 0.40 11.51 16 11 C -0.52 -29.82 8.46 25.60 0.22 -29.60 16 12 H 0.06 3.40 7.12 -2.91 -0.02 3.38 16 13 C 0.01 0.28 5.46 84.65 0.46 0.75 16 14 N -0.93 -55.82 13.29 21.45 0.28 -55.53 16 15 Si 0.97 44.23 29.54 68.60 2.03 46.26 16 16 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 17 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 19 S 0.14 3.86 23.18 -56.49 -1.31 2.55 16 20 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 21 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 22 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.08 2.06 6.58 -2.39 -0.02 2.04 16 24 H 0.07 1.91 6.72 -2.39 -0.02 1.90 16 25 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.07 2.76 7.93 -2.39 -0.02 2.74 16 27 H 0.05 1.88 6.74 -2.39 -0.02 1.87 16 28 H 0.07 2.39 5.13 -2.39 -0.01 2.37 16 29 H 0.06 2.40 6.76 -2.39 -0.02 2.38 16 30 H 0.02 0.82 8.03 -2.39 -0.02 0.80 16 31 H 0.01 0.37 7.93 -2.39 -0.02 0.35 16 32 H -0.03 -1.74 8.12 -2.39 -0.02 -1.76 16 33 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -65.58 284.30 0.73 -64.85 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: 1.10 Total: 1.62 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: 4.94 Total: -14.67 kcal Atomic # 7 Polarization: -94.59 SS G_CDS: -6.02 Total: -100.61 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: 3.86 SS G_CDS: -1.31 Total: 2.55 kcal Total: -65.58 0.73 -64.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083219090.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.198 kcal (2) G-P(sol) polarization free energy of solvation -65.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds