Wall clock time and date at job start Sun Mar 29 2020 23:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33638 * 126.03854 * 2 1 4 4 N 1.31785 * 114.50130 * 179.78985 * 3 2 1 5 5 C 1.29031 * 117.11884 * 0.51781 * 4 3 2 6 6 C 1.50703 * 124.90978 * 179.74811 * 5 4 3 7 7 H 1.09008 * 109.46712 * 164.95986 * 6 5 4 8 8 C 1.52993 * 109.47437 * 284.96202 * 6 5 4 9 9 N 1.46898 * 109.47118 * 44.96410 * 6 5 4 10 10 C 1.46897 * 111.00141 * 154.99640 * 9 6 5 11 11 C 1.53001 * 109.47229 * 180.02562 * 10 9 6 12 12 C 1.50705 * 109.47135 * 180.02562 * 11 10 9 13 13 H 1.08004 * 119.99905 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99780 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00181 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99788 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47283 * 59.99789 * 16 14 12 18 18 H 1.48495 * 109.47037 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46804 * 300.00048 * 16 14 12 20 20 S 1.70976 * 110.17099 * 359.71846 * 5 4 3 21 21 H 1.09002 * 109.47152 * 269.69193 * 1 2 3 22 22 H 1.09001 * 109.46980 * 149.69293 * 1 2 3 23 23 H 1.09004 * 109.47113 * 29.69274 * 1 2 3 24 24 H 1.08000 * 122.74772 * 359.97438 * 3 2 1 25 25 H 1.08999 * 109.47336 * 180.02562 * 8 6 5 26 26 H 1.09005 * 109.47205 * 299.99946 * 8 6 5 27 27 H 1.08995 * 109.47518 * 60.00294 * 8 6 5 28 28 H 1.00900 * 111.00290 * 31.03813 * 9 6 5 29 29 H 1.09004 * 109.47215 * 299.99587 * 10 9 6 30 30 H 1.08997 * 109.47521 * 59.99583 * 10 9 6 31 31 H 1.09001 * 109.46805 * 299.99367 * 11 10 9 32 32 H 1.08994 * 109.47600 * 59.99749 * 11 10 9 33 33 H 0.96998 * 119.99477 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2933 1.0806 0.0000 4 7 3.5845 0.8171 0.0044 5 6 3.9311 -0.4258 -0.0023 6 6 5.3532 -0.9246 -0.0043 7 1 5.3674 -1.9829 0.2566 8 6 5.9585 -0.7343 -1.3964 9 7 6.1391 -0.1673 0.9791 10 6 7.2938 -0.9475 1.4435 11 6 8.0857 -0.1280 2.4645 12 6 9.2707 -0.9282 2.9405 13 1 9.4417 -1.9221 2.5538 14 6 10.1365 -0.3915 3.8696 15 7 9.9286 0.8189 4.3401 16 14 11.6050 -1.3837 4.4602 17 1 12.4776 -1.7122 3.3044 18 1 12.3736 -0.5883 5.4510 19 1 11.1308 -2.6396 5.0951 20 16 2.5436 -1.4248 -0.0077 21 1 -0.3633 -0.0055 1.0277 22 1 -0.3633 -0.8872 -0.5186 23 1 -0.3633 0.8928 -0.5091 24 1 1.9025 2.0874 -0.0004 25 1 6.9869 -1.0954 -1.3979 26 1 5.3754 -1.2962 -2.1261 27 1 5.9444 0.3239 -1.6573 28 1 5.5636 0.1238 1.7551 29 1 6.9457 -1.8694 1.9096 30 1 7.9343 -1.1887 0.5952 31 1 8.4338 0.7940 1.9988 32 1 7.4450 0.1127 3.3127 33 1 10.5380 1.1965 4.9934 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097085140.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:45 Heat of formation + Delta-G solvation = 7.582306 kcal Electronic energy + Delta-G solvation = -14421.321421 eV Core-core repulsion = 11993.348732 eV Total energy + Delta-G solvation = -2427.972688 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 240.099 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.81470 -38.06321 -35.40010 -33.72570 -32.40210 -29.80475 -28.00425 -26.17680 -25.33169 -23.05112 -22.37082 -19.92678 -19.05900 -18.44821 -17.04033 -16.44031 -16.23702 -15.95965 -15.42604 -15.11894 -14.52940 -14.17808 -14.06108 -13.83368 -13.53704 -13.41884 -13.03240 -12.88153 -12.79454 -12.48464 -12.41607 -12.10929 -11.84603 -11.43024 -11.30928 -10.56208 -10.51744 -10.19628 -9.72539 -9.34226 -8.19377 -6.31682 -0.30964 0.32930 0.73398 1.41109 1.44946 1.52811 1.86659 2.41394 3.09778 3.13971 3.31087 3.87856 4.04218 4.24062 4.27756 4.31904 4.50945 4.58927 4.72999 4.78713 4.89317 4.90900 5.04557 5.04998 5.25708 5.34421 5.44512 5.65243 5.77649 6.10241 6.22333 6.40947 6.84860 6.85521 7.37782 8.92832 Molecular weight = 240.10amu Principal moments of inertia in cm(-1) A = 0.048144 B = 0.004205 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.450887 B = 6657.702624 C = 6800.590959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.215 4.215 3 C 0.007 3.993 4 N -0.480 5.480 5 C 0.021 3.979 6 C 0.160 3.840 7 H 0.069 0.931 8 C -0.126 4.126 9 N -0.680 5.680 10 C 0.084 3.916 11 C 0.033 3.967 12 C -0.545 4.545 13 H 0.065 0.935 14 C -0.001 4.001 15 N -0.934 5.934 16 Si 0.970 3.030 17 H -0.265 1.265 18 H -0.284 1.284 19 H -0.265 1.265 20 S 0.142 5.858 21 H 0.087 0.913 22 H 0.082 0.918 23 H 0.096 0.904 24 H 0.190 0.810 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.051 0.949 28 H 0.335 0.665 29 H 0.024 0.976 30 H 0.067 0.933 31 H -0.008 1.008 32 H -0.013 1.013 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.258 -5.556 -10.665 22.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.336 4.336 3 C -0.143 4.143 4 N -0.194 5.194 5 C -0.256 4.256 6 C 0.047 3.953 7 H 0.087 0.913 8 C -0.185 4.185 9 N -0.312 5.312 10 C -0.045 4.045 11 C -0.005 4.005 12 C -0.583 4.583 13 H 0.083 0.917 14 C -0.199 4.199 15 N -0.574 5.574 16 Si 0.794 3.206 17 H -0.190 1.190 18 H -0.209 1.209 19 H -0.190 1.190 20 S 0.396 5.604 21 H 0.106 0.894 22 H 0.101 0.899 23 H 0.115 0.885 24 H 0.207 0.793 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.071 0.929 28 H 0.153 0.847 29 H 0.042 0.958 30 H 0.086 0.914 31 H 0.011 0.989 32 H 0.005 0.995 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.574 -5.770 -11.037 22.363 hybrid contribution 0.247 0.344 1.183 1.256 sum -18.327 -5.426 -9.854 21.504 Atomic orbital electron populations 1.20395 0.84060 1.04793 1.04053 1.26514 1.03181 0.94199 1.09731 1.22118 0.86426 1.01490 1.04257 1.66191 1.18896 1.19532 1.14827 1.27049 1.00986 0.91925 1.05663 1.20202 0.84142 0.95282 0.95663 0.91291 1.21726 1.01052 1.02363 0.93394 1.60571 1.10501 1.42057 1.18076 1.21908 0.91177 0.93972 0.97444 1.18900 0.93926 0.94977 0.92684 1.21587 1.10412 1.02086 1.24215 0.91723 1.26024 1.01340 0.96083 0.96442 1.70123 1.39072 1.17037 1.31119 0.85436 0.78506 0.78475 0.78223 1.18989 1.20938 1.18991 1.83721 0.97577 1.11156 1.67918 0.89429 0.89892 0.88509 0.79293 0.91629 0.90469 0.92944 0.84680 0.95784 0.91416 0.98911 0.99490 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.81 10.42 71.24 0.74 -0.06 16 2 C -0.21 -4.17 6.60 24.64 0.16 -4.01 16 3 C 0.01 0.17 11.25 83.66 0.94 1.11 16 4 N -0.48 -14.95 10.50 -191.44 -2.01 -16.96 16 5 C 0.02 0.61 5.90 88.52 0.52 1.14 16 6 C 0.16 4.91 3.11 44.17 0.14 5.05 16 7 H 0.07 1.94 7.80 -2.38 -0.02 1.92 16 8 C -0.13 -3.52 9.40 71.98 0.68 -2.85 16 9 N -0.68 -26.38 6.27 -495.45 -3.11 -29.49 16 10 C 0.08 3.62 5.42 86.30 0.47 4.08 16 11 C 0.03 1.81 5.23 29.85 0.16 1.96 16 12 C -0.54 -31.61 9.11 25.60 0.23 -31.38 16 13 H 0.06 3.53 7.74 -2.91 -0.02 3.51 16 14 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 15 N -0.93 -58.39 13.29 21.45 0.28 -58.10 16 16 Si 0.97 44.73 29.54 68.60 2.03 46.75 16 17 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 18 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 20 S 0.14 3.03 23.18 -56.49 -1.31 1.72 16 21 H 0.09 0.82 8.14 -2.39 -0.02 0.81 16 22 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 23 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 24 H 0.19 3.61 8.06 -2.91 -0.02 3.59 16 25 H 0.06 1.84 7.45 -2.39 -0.02 1.82 16 26 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 27 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.34 13.53 8.35 -89.69 -0.75 12.78 16 29 H 0.02 0.99 8.06 -2.38 -0.02 0.97 16 30 H 0.07 2.84 7.44 -2.39 -0.02 2.82 16 31 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 32 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 33 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -69.03 296.19 0.73 -68.30 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 0.35 Total: 12.33 kcal Atomic # 6 Polarization: -29.06 SS G_CDS: 4.50 Total: -24.56 kcal Atomic # 7 Polarization: -99.73 SS G_CDS: -4.83 Total: -104.56 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Atomic # 16 Polarization: 3.03 SS G_CDS: -1.31 Total: 1.72 kcal Total: -69.03 0.73 -68.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097085140.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.887 kcal (2) G-P(sol) polarization free energy of solvation -69.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds