Wall clock time and date at job start Sun Mar 29 2020 23:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33635 * 126.03463 * 2 1 4 4 N 1.31788 * 114.49833 * 180.02562 * 3 2 1 5 5 C 1.29022 * 117.12257 * 359.97438 * 4 3 2 6 6 C 1.50708 * 124.91480 * 180.02562 * 5 4 3 7 7 N 1.46893 * 109.46956 * 89.97624 * 6 5 4 8 8 C 1.46903 * 111.00173 * 293.95065 * 7 6 5 9 9 C 1.46904 * 110.99887 * 170.00180 * 7 6 5 10 10 H 1.09000 * 109.47387 * 59.99483 * 9 7 6 11 11 C 1.53003 * 109.46984 * 299.99757 * 9 7 6 12 12 C 1.50699 * 109.47427 * 180.02562 * 9 7 6 13 13 H 1.08004 * 119.99746 * 0.02562 * 12 9 7 14 14 C 1.37872 * 120.00117 * 179.97438 * 12 9 7 15 15 N 1.31509 * 120.00198 * 0.02562 * 14 12 9 16 16 Si 1.86801 * 119.99803 * 179.97438 * 14 12 9 17 17 H 1.48492 * 109.47285 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.47053 * 120.00339 * 16 14 12 19 19 H 1.48502 * 109.47236 * 239.99916 * 16 14 12 20 20 S 1.70974 * 110.16863 * 359.72809 * 5 4 3 21 21 H 1.09002 * 109.47152 * 90.02391 * 1 2 3 22 22 H 1.09001 * 109.46980 * 330.02492 * 1 2 3 23 23 H 1.09004 * 109.47113 * 210.02473 * 1 2 3 24 24 H 1.08000 * 122.75360 * 0.02562 * 3 2 1 25 25 H 1.09000 * 109.46962 * 209.97730 * 6 5 4 26 26 H 1.09000 * 109.46604 * 329.97408 * 6 5 4 27 27 H 1.08999 * 109.46402 * 60.00791 * 8 7 6 28 28 H 1.09004 * 109.47150 * 180.02562 * 8 7 6 29 29 H 1.08994 * 109.47469 * 300.00287 * 8 7 6 30 30 H 1.08998 * 109.47559 * 300.00201 * 11 9 7 31 31 H 1.09002 * 109.46777 * 59.99817 * 11 9 7 32 32 H 1.08997 * 109.47511 * 179.97438 * 11 9 7 33 33 H 0.96998 * 120.00296 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2932 1.0807 0.0000 4 7 3.5844 0.8171 -0.0005 5 6 3.9311 -0.4257 -0.0005 6 6 5.3532 -0.9245 -0.0005 7 7 5.8155 -1.0859 1.3845 8 6 5.9007 0.2127 2.0658 9 6 7.1039 -1.7902 1.4307 10 1 7.8499 -1.2197 0.8775 11 6 6.9507 -3.1757 0.8000 12 6 7.5448 -1.9374 2.8642 13 1 6.9292 -1.5472 3.6613 14 6 8.7334 -2.5711 3.1583 15 7 9.4827 -3.0466 2.1878 16 14 9.2802 -2.7529 4.9352 17 1 8.2677 -2.1373 5.8301 18 1 9.4207 -4.1940 5.2649 19 1 10.5867 -2.0725 5.1232 20 16 2.5436 -1.4247 0.0079 21 1 -0.3633 -0.0004 -1.0277 22 1 -0.3633 0.8902 0.5135 23 1 -0.3633 -0.8898 0.5142 24 1 1.9024 2.0875 0.0004 25 1 5.4014 -1.8848 -0.5139 26 1 5.9905 -0.2051 -0.5148 27 1 4.9168 0.6816 2.0782 28 1 6.2457 0.0642 3.0891 29 1 6.6031 0.8558 1.5357 30 1 6.2047 -3.7463 1.3532 31 1 6.6315 -3.0696 -0.2368 32 1 7.9067 -3.6981 0.8339 33 1 10.3192 -3.4921 2.3946 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180542765.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:05 Heat of formation + Delta-G solvation = 48.982370 kcal Electronic energy + Delta-G solvation = -15042.873946 eV Core-core repulsion = 12616.696499 eV Total energy + Delta-G solvation = -2426.177447 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 240.099 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.51741 -36.95848 -33.22561 -32.26657 -29.47348 -28.61048 -26.04205 -24.73916 -23.77117 -22.57530 -19.69388 -18.92558 -17.72942 -16.28755 -15.43824 -14.92632 -14.64604 -14.14835 -13.79746 -13.73080 -13.12909 -12.83067 -12.64120 -12.35676 -12.18767 -11.73970 -11.12257 -11.02420 -10.97994 -10.72091 -10.63967 -10.17763 -10.07316 -9.92793 -9.34181 -8.97870 -8.90750 -8.57482 -8.40374 -7.26355 -6.02851 -4.07109 0.92677 1.57700 2.03654 3.04915 3.29672 3.37595 3.42381 4.38001 4.46565 4.97212 5.12761 5.14463 5.30360 5.37035 5.39113 5.69945 5.76827 5.94725 6.05580 6.29955 6.37732 6.48731 6.79058 6.85733 7.00547 7.09973 7.46823 7.64885 7.81029 7.99979 8.15150 8.27874 8.53157 8.98957 9.57860 11.04154 Molecular weight = 240.10amu Principal moments of inertia in cm(-1) A = 0.045768 B = 0.005543 C = 0.005423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.637008 B = 5050.514492 C = 5161.883877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.248 4.248 3 C 0.034 3.966 4 N -0.480 5.480 5 C 0.080 3.920 6 C 0.118 3.882 7 N -0.530 5.530 8 C 0.039 3.961 9 C 0.212 3.788 10 H 0.002 0.998 11 C -0.136 4.136 12 C -0.502 4.502 13 H 0.065 0.935 14 C 0.059 3.941 15 N -0.893 5.893 16 Si 0.897 3.103 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.285 1.285 20 S 0.134 5.866 21 H 0.071 0.929 22 H 0.074 0.926 23 H 0.068 0.932 24 H 0.168 0.832 25 H 0.096 0.904 26 H 0.055 0.945 27 H 0.046 0.954 28 H 0.077 0.923 29 H 0.014 0.986 30 H 0.036 0.964 31 H 0.008 0.992 32 H 0.088 0.912 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.193 3.943 -5.248 15.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.370 4.370 3 C -0.117 4.117 4 N -0.194 5.194 5 C -0.198 4.198 6 C -0.013 4.013 7 N -0.256 5.256 8 C -0.109 4.109 9 C 0.106 3.894 10 H 0.020 0.980 11 C -0.194 4.194 12 C -0.541 4.541 13 H 0.083 0.917 14 C -0.142 4.142 15 N -0.532 5.532 16 Si 0.725 3.275 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.211 1.211 20 S 0.389 5.611 21 H 0.090 0.910 22 H 0.093 0.907 23 H 0.087 0.913 24 H 0.185 0.815 25 H 0.114 0.886 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.095 0.905 29 H 0.033 0.967 30 H 0.055 0.945 31 H 0.027 0.973 32 H 0.106 0.894 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.065 2.870 -5.014 15.205 hybrid contribution 0.647 1.302 0.520 1.543 sum -13.418 4.172 -4.495 14.753 Atomic orbital electron populations 1.20143 0.87274 1.03034 1.02408 1.25942 1.01370 0.95857 1.13811 1.21625 0.87282 0.99699 1.03109 1.66342 1.17350 1.19008 1.16713 1.27172 1.01209 0.90733 1.00696 1.20765 0.86154 1.00361 0.94069 1.62203 1.33370 1.19677 1.10392 1.22222 0.98964 0.89496 1.00262 1.19306 0.82496 0.90590 0.96967 0.98023 1.21896 1.02857 0.99590 0.95034 1.21159 1.04595 1.36760 0.91545 0.91720 1.24918 0.96443 0.95452 0.97377 1.69892 1.13270 1.38912 1.31159 0.86451 0.78429 0.77761 0.84839 1.19745 1.21010 1.21126 1.83965 0.98515 1.11033 1.67577 0.91038 0.90685 0.91347 0.81542 0.88638 0.92752 0.93499 0.90481 0.96744 0.94465 0.97311 0.89378 0.92997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.42 36.01 0.38 -0.24 16 2 C -0.25 -3.18 6.60 -35.92 -0.24 -3.42 16 3 C 0.03 0.49 11.25 -19.18 -0.22 0.27 16 4 N -0.48 -8.28 9.76 -11.86 -0.12 -8.40 16 5 C 0.08 1.39 6.04 -13.45 -0.08 1.31 16 6 C 0.12 2.24 5.36 -4.98 -0.03 2.22 16 7 N -0.53 -11.70 4.61 -237.73 -1.10 -12.79 16 8 C 0.04 0.83 9.08 60.07 0.55 1.38 16 9 C 0.21 5.33 2.06 -68.86 -0.14 5.19 16 10 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 11 C -0.14 -3.24 8.76 37.16 0.33 -2.91 16 12 C -0.50 -13.68 7.88 -34.44 -0.27 -13.95 16 13 H 0.06 1.77 6.41 -52.48 -0.34 1.44 16 14 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 15 N -0.89 -25.20 11.32 55.43 0.63 -24.57 16 16 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 20 S 0.13 1.96 23.18 -107.50 -2.49 -0.53 16 21 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.17 1.89 8.06 -52.49 -0.42 1.46 16 25 H 0.10 1.73 5.83 -51.93 -0.30 1.43 16 26 H 0.05 1.05 8.12 -51.93 -0.42 0.63 16 27 H 0.05 0.94 6.70 -51.93 -0.35 0.60 16 28 H 0.08 1.72 6.10 -51.93 -0.32 1.40 16 29 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.01 0.17 6.20 -51.93 -0.32 -0.15 16 32 H 0.09 2.31 6.07 -51.93 -0.32 1.99 16 33 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 283.12 15.07 4.27 4.27 Total: -1.00 -29.12 283.12 -8.11 -37.23 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: -4.46 Total: -2.82 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: 0.18 Total: -8.63 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: -0.59 Total: -45.76 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -2.49 Total: -0.53 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.12 -8.11 -37.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180542765.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.217 kcal (2) G-P(sol) polarization free energy of solvation -29.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds