Wall clock time and date at job start Sun Mar 29 2020 23:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33635 * 126.03463 * 2 1 4 4 N 1.31788 * 114.49833 * 180.02562 * 3 2 1 5 5 C 1.29022 * 117.12257 * 359.97438 * 4 3 2 6 6 C 1.50708 * 124.91480 * 180.02562 * 5 4 3 7 7 N 1.46893 * 109.46956 * 89.97624 * 6 5 4 8 8 C 1.46903 * 111.00173 * 293.95065 * 7 6 5 9 9 C 1.46904 * 110.99887 * 170.00180 * 7 6 5 10 10 H 1.09000 * 109.47387 * 59.99483 * 9 7 6 11 11 C 1.53003 * 109.46984 * 299.99757 * 9 7 6 12 12 C 1.50699 * 109.47427 * 180.02562 * 9 7 6 13 13 H 1.08004 * 119.99746 * 0.02562 * 12 9 7 14 14 C 1.37872 * 120.00117 * 179.97438 * 12 9 7 15 15 N 1.31509 * 120.00198 * 0.02562 * 14 12 9 16 16 Si 1.86801 * 119.99803 * 179.97438 * 14 12 9 17 17 H 1.48492 * 109.47285 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.47053 * 120.00339 * 16 14 12 19 19 H 1.48502 * 109.47236 * 239.99916 * 16 14 12 20 20 S 1.70974 * 110.16863 * 359.72809 * 5 4 3 21 21 H 1.09002 * 109.47152 * 90.02391 * 1 2 3 22 22 H 1.09001 * 109.46980 * 330.02492 * 1 2 3 23 23 H 1.09004 * 109.47113 * 210.02473 * 1 2 3 24 24 H 1.08000 * 122.75360 * 0.02562 * 3 2 1 25 25 H 1.09000 * 109.46962 * 209.97730 * 6 5 4 26 26 H 1.09000 * 109.46604 * 329.97408 * 6 5 4 27 27 H 1.08999 * 109.46402 * 60.00791 * 8 7 6 28 28 H 1.09004 * 109.47150 * 180.02562 * 8 7 6 29 29 H 1.08994 * 109.47469 * 300.00287 * 8 7 6 30 30 H 1.08998 * 109.47559 * 300.00201 * 11 9 7 31 31 H 1.09002 * 109.46777 * 59.99817 * 11 9 7 32 32 H 1.08997 * 109.47511 * 179.97438 * 11 9 7 33 33 H 0.96998 * 120.00296 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2932 1.0807 0.0000 4 7 3.5844 0.8171 -0.0005 5 6 3.9311 -0.4257 -0.0005 6 6 5.3532 -0.9245 -0.0005 7 7 5.8155 -1.0859 1.3845 8 6 5.9007 0.2127 2.0658 9 6 7.1039 -1.7902 1.4307 10 1 7.8499 -1.2197 0.8775 11 6 6.9507 -3.1757 0.8000 12 6 7.5448 -1.9374 2.8642 13 1 6.9292 -1.5472 3.6613 14 6 8.7334 -2.5711 3.1583 15 7 9.4827 -3.0466 2.1878 16 14 9.2802 -2.7529 4.9352 17 1 8.2677 -2.1373 5.8301 18 1 9.4207 -4.1940 5.2649 19 1 10.5867 -2.0725 5.1232 20 16 2.5436 -1.4247 0.0079 21 1 -0.3633 -0.0004 -1.0277 22 1 -0.3633 0.8902 0.5135 23 1 -0.3633 -0.8898 0.5142 24 1 1.9024 2.0875 0.0004 25 1 5.4014 -1.8848 -0.5139 26 1 5.9905 -0.2051 -0.5148 27 1 4.9168 0.6816 2.0782 28 1 6.2457 0.0642 3.0891 29 1 6.6031 0.8558 1.5357 30 1 6.2047 -3.7463 1.3532 31 1 6.6315 -3.0696 -0.2368 32 1 7.9067 -3.6981 0.8339 33 1 10.3192 -3.4921 2.3946 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180542765.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:05 Heat of formation + Delta-G solvation = 30.274858 kcal Electronic energy + Delta-G solvation = -15043.685164 eV Core-core repulsion = 12616.696499 eV Total energy + Delta-G solvation = -2426.988665 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 240.099 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.72498 -38.69299 -35.01521 -33.53171 -31.25889 -30.15195 -27.54910 -26.44862 -25.22826 -24.03621 -21.50663 -20.17369 -18.93300 -18.32053 -17.18702 -16.19864 -16.13039 -15.89024 -15.26442 -15.05171 -14.54930 -14.04325 -13.99181 -13.65158 -13.60597 -13.24101 -12.96765 -12.81094 -12.58318 -12.51193 -12.12066 -12.00477 -11.96750 -11.83532 -10.94000 -10.53388 -10.52849 -10.11335 -9.67130 -9.06875 -8.11627 -6.23154 -0.23284 0.45201 0.88491 1.42054 1.44088 1.55677 1.88204 2.43083 3.13875 3.17725 3.53131 4.03522 4.11367 4.33345 4.38841 4.49713 4.57435 4.69233 4.77819 4.89117 4.95062 5.01184 5.03160 5.10934 5.19809 5.36450 5.48221 5.70662 5.74050 6.22205 6.29514 6.60723 6.84640 6.89558 7.45609 8.94679 Molecular weight = 240.10amu Principal moments of inertia in cm(-1) A = 0.045768 B = 0.005543 C = 0.005423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.637008 B = 5050.514492 C = 5161.883877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.223 4.223 3 C 0.010 3.990 4 N -0.498 5.498 5 C 0.041 3.959 6 C 0.124 3.876 7 N -0.534 5.534 8 C 0.051 3.949 9 C 0.216 3.784 10 H -0.032 1.032 11 C -0.124 4.124 12 C -0.519 4.519 13 H 0.058 0.942 14 C 0.014 3.986 15 N -0.918 5.918 16 Si 0.960 3.040 17 H -0.269 1.269 18 H -0.278 1.278 19 H -0.282 1.282 20 S 0.151 5.849 21 H 0.091 0.909 22 H 0.095 0.905 23 H 0.077 0.923 24 H 0.194 0.806 25 H 0.101 0.899 26 H 0.044 0.956 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.006 0.994 30 H 0.035 0.965 31 H 0.034 0.966 32 H 0.064 0.936 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.414 4.126 -4.966 17.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.345 4.345 3 C -0.140 4.140 4 N -0.214 5.214 5 C -0.236 4.236 6 C -0.007 4.007 7 N -0.259 5.259 8 C -0.098 4.098 9 C 0.109 3.891 10 H -0.015 1.015 11 C -0.182 4.182 12 C -0.557 4.557 13 H 0.076 0.924 14 C -0.185 4.185 15 N -0.558 5.558 16 Si 0.786 3.214 17 H -0.194 1.194 18 H -0.204 1.204 19 H -0.207 1.207 20 S 0.405 5.595 21 H 0.109 0.891 22 H 0.114 0.886 23 H 0.096 0.904 24 H 0.211 0.789 25 H 0.119 0.881 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.025 0.975 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.295 3.062 -4.740 17.245 hybrid contribution 1.195 1.292 0.370 1.798 sum -15.101 4.354 -4.370 16.312 Atomic orbital electron populations 1.20366 0.84069 1.04517 1.04110 1.26510 1.03181 0.94369 1.10445 1.22044 0.86344 1.01397 1.04203 1.66289 1.19387 1.19316 1.16370 1.26703 1.01092 0.91681 1.04101 1.20639 0.87587 1.00506 0.91997 1.62124 1.31303 1.19861 1.12635 1.22085 0.99286 0.89225 0.99202 1.19118 0.83148 0.91095 0.95696 1.01478 1.21701 1.01477 0.98410 0.96577 1.21400 1.04976 1.36933 0.92425 0.92360 1.25668 0.96471 0.95114 1.01235 1.70009 1.13553 1.39296 1.32956 0.85471 0.77929 0.77822 0.80184 1.19375 1.20414 1.20747 1.83835 0.97501 1.11310 1.66863 0.89053 0.88610 0.90409 0.78921 0.88121 0.93846 0.92274 0.91877 0.97504 0.94562 0.94721 0.91766 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.96 10.42 71.24 0.74 -0.22 16 2 C -0.22 -5.05 6.60 24.64 0.16 -4.89 16 3 C 0.01 0.27 11.25 83.65 0.94 1.21 16 4 N -0.50 -16.70 9.76 -191.44 -1.87 -18.57 16 5 C 0.04 1.40 6.04 88.52 0.53 1.94 16 6 C 0.12 4.75 5.36 85.56 0.46 5.21 16 7 N -0.53 -23.86 4.61 -906.03 -4.18 -28.04 16 8 C 0.05 2.19 9.08 127.69 1.16 3.35 16 9 C 0.22 11.12 2.06 44.17 0.09 11.21 16 10 H -0.03 -1.85 8.14 -2.39 -0.02 -1.87 16 11 C -0.12 -5.97 8.76 71.98 0.63 -5.33 16 12 C -0.52 -28.75 7.88 25.60 0.20 -28.55 16 13 H 0.06 3.24 6.41 -2.91 -0.02 3.22 16 14 C 0.01 0.77 5.30 84.65 0.45 1.22 16 15 N -0.92 -52.58 11.32 21.44 0.24 -52.34 16 16 Si 0.96 43.79 29.54 68.60 2.03 45.82 16 17 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 18 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 20 S 0.15 4.13 23.18 -56.49 -1.31 2.82 16 21 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 22 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 24 H 0.19 3.79 8.06 -2.91 -0.02 3.77 16 25 H 0.10 3.65 5.83 -2.39 -0.01 3.64 16 26 H 0.04 1.73 8.12 -2.39 -0.02 1.71 16 27 H 0.06 2.39 6.70 -2.39 -0.02 2.37 16 28 H 0.06 2.87 6.10 -2.38 -0.01 2.85 16 29 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.03 1.44 6.20 -2.39 -0.01 1.43 16 32 H 0.06 3.42 6.07 -2.39 -0.01 3.40 16 33 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -62.69 283.12 1.38 -61.31 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: 1.10 Total: 3.85 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: 5.37 Total: -14.85 kcal Atomic # 7 Polarization: -93.15 SS G_CDS: -5.81 Total: -98.95 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: 4.13 SS G_CDS: -1.31 Total: 2.82 kcal Total: -62.69 1.38 -61.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180542765.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.586 kcal (2) G-P(sol) polarization free energy of solvation -62.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds