Wall clock time and date at job start Sun Mar 29 2020 23:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38314 * 119.48662 * 2 1 4 4 C 1.38414 * 119.28202 * 180.02562 * 3 2 1 5 5 C 1.39767 * 118.31182 * 0.02562 * 4 3 2 6 6 C 1.48387 * 120.53822 * 180.02562 * 5 4 3 7 7 C 1.40043 * 120.81993 * 0.02562 * 6 5 4 8 8 C 1.38502 * 119.42194 * 179.72302 * 7 6 5 9 9 N 1.31481 * 121.15128 * 0.02843 * 8 7 6 10 10 C 1.33651 * 121.78859 * 359.96708 * 9 8 7 11 11 C 1.41423 * 119.77741 * 180.02562 * 10 9 8 12 12 H 1.07992 * 119.99974 * 173.69412 * 11 10 9 13 13 C 1.40033 * 119.99978 * 353.69585 * 11 10 9 14 14 N 1.30744 * 120.00080 * 6.27818 * 13 11 10 15 15 Si 1.86803 * 120.00142 * 186.28520 * 13 11 10 16 16 H 1.48501 * 109.47199 * 94.98450 * 15 13 11 17 17 H 1.48492 * 109.47135 * 214.98208 * 15 13 11 18 18 H 1.48495 * 109.47066 * 334.98229 * 15 13 11 19 19 C 1.39306 * 120.82416 * 179.71919 * 6 5 4 20 20 C 1.39302 * 118.92780 * 0.27263 * 5 4 3 21 21 N 1.31746 * 120.59353 * 359.43221 * 20 5 4 22 22 H 1.08993 * 109.47689 * 89.99550 * 1 2 3 23 23 H 1.09006 * 109.47329 * 210.00391 * 1 2 3 24 24 H 1.09010 * 109.47136 * 329.99613 * 1 2 3 25 25 H 1.08003 * 120.36015 * 0.04883 * 3 2 1 26 26 H 1.08001 * 120.84469 * 179.97438 * 4 3 2 27 27 H 1.07999 * 120.28797 * 359.74984 * 7 6 5 28 28 H 1.08000 * 119.42879 * 179.97438 * 8 7 6 29 29 H 0.97003 * 120.00081 * 180.02562 * 14 13 11 30 30 H 1.08002 * 120.58388 * 0.25291 * 19 6 5 31 31 H 1.08002 * 119.70324 * 179.72502 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1878 1.2040 0.0000 4 6 3.5719 1.1990 -0.0005 5 6 4.2304 -0.0338 -0.0016 6 6 5.7129 -0.0967 -0.0017 7 6 6.4808 1.0744 -0.0001 8 6 7.8627 0.9819 0.0057 9 7 8.4662 -0.1862 0.0091 10 6 7.7801 -1.3331 0.0079 11 6 8.4729 -2.5661 0.0123 12 1 7.9266 -3.4920 0.1141 13 6 9.8672 -2.5861 -0.1153 14 7 10.5399 -1.4650 -0.1150 15 14 10.7662 -4.2146 -0.2862 16 1 10.9847 -4.5109 -1.7248 17 1 12.0770 -4.1315 0.4066 18 1 9.9517 -5.2961 0.3238 19 6 6.3754 -1.3222 0.0031 20 6 3.4724 -1.2025 -0.0079 21 7 2.1561 -1.1481 -0.0015 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5139 25 1 1.6453 2.1379 0.0008 26 1 4.1290 2.1243 -0.0010 27 1 5.9996 2.0413 -0.0029 28 1 8.4550 1.8850 0.0064 29 1 11.5058 -1.4789 -0.2038 30 1 5.8187 -2.2478 0.0029 31 1 3.9683 -2.1620 -0.0133 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259620169.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:27 Heat of formation + Delta-G solvation = 57.206432 kcal Electronic energy + Delta-G solvation = -15600.205107 eV Core-core repulsion = 13038.940332 eV Total energy + Delta-G solvation = -2561.264776 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.096 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.98357 -38.06991 -34.12570 -33.13410 -32.12187 -30.33823 -29.98546 -26.88628 -25.77961 -23.58117 -22.46373 -21.13762 -20.47914 -17.58317 -16.48907 -15.89227 -15.51092 -14.87768 -14.30577 -14.28556 -14.00095 -13.62570 -13.00142 -12.65237 -12.64380 -12.45306 -12.08532 -12.04936 -11.49650 -11.26985 -11.14234 -10.76438 -10.53731 -9.96245 -9.88649 -9.39757 -9.15348 -9.08037 -7.74623 -7.65101 -7.58397 -6.48049 -4.59891 1.14142 1.54056 2.68904 2.99127 3.06412 3.09865 3.15891 3.90550 4.17871 4.51440 4.71395 4.91404 5.18400 5.24065 5.31772 5.58337 5.63218 5.65854 5.82743 5.85715 6.01676 6.09883 6.31772 6.40518 6.45652 6.62737 6.82089 6.99124 7.06441 7.23246 7.42974 7.59268 7.89243 8.15753 8.26332 8.57678 8.83120 10.02867 10.24894 Molecular weight = 240.10amu Principal moments of inertia in cm(-1) A = 0.042632 B = 0.005303 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.626251 B = 5278.308765 C = 5916.928837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.103 3.897 3 C -0.173 4.173 4 C -0.071 4.071 5 C -0.071 4.071 6 C -0.001 4.001 7 C -0.305 4.305 8 C 0.126 3.874 9 N -0.482 5.482 10 C 0.254 3.746 11 C -0.430 4.430 12 H 0.085 0.915 13 C 0.069 3.931 14 N -0.714 5.714 15 Si 0.908 3.092 16 H -0.269 1.269 17 H -0.276 1.276 18 H -0.260 1.260 19 C -0.251 4.251 20 C 0.106 3.894 21 N -0.485 5.485 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.129 0.871 26 H 0.136 0.864 27 H 0.096 0.904 28 H 0.121 0.879 29 H 0.274 0.726 30 H 0.104 0.896 31 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.437 3.091 -0.113 10.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.035 4.035 3 C -0.193 4.193 4 C -0.097 4.097 5 C -0.073 4.073 6 C -0.007 4.007 7 C -0.328 4.328 8 C -0.039 4.039 9 N -0.195 5.195 10 C 0.130 3.870 11 C -0.461 4.461 12 H 0.103 0.897 13 C -0.157 4.157 14 N -0.335 5.335 15 Si 0.732 3.268 16 H -0.194 1.194 17 H -0.201 1.201 18 H -0.184 1.184 19 C -0.274 4.274 20 C -0.051 4.051 21 N -0.194 5.194 22 H 0.091 0.909 23 H 0.092 0.908 24 H 0.089 0.911 25 H 0.147 0.853 26 H 0.153 0.847 27 H 0.114 0.886 28 H 0.138 0.862 29 H 0.085 0.915 30 H 0.122 0.878 31 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -9.779 2.325 -0.110 10.053 hybrid contribution 0.066 0.296 -0.120 0.326 sum -9.713 2.621 -0.230 10.063 Atomic orbital electron populations 1.20639 0.89355 1.02967 1.02604 1.21219 0.96732 0.88632 0.96919 1.21820 0.94743 0.98906 1.03790 1.21703 0.93862 0.98290 0.95843 1.20053 0.94657 0.93736 0.98813 1.18444 0.88858 0.94439 0.98982 1.21303 0.95353 0.95981 1.20206 1.22460 0.90880 0.96556 0.94023 1.68727 1.37646 0.96467 1.16633 1.18553 0.87768 0.92235 0.88474 1.19654 0.91649 0.92571 1.42236 0.89650 1.26078 0.98199 0.97766 0.93634 1.70133 1.07971 1.27209 1.28219 0.86298 0.79101 0.82116 0.79266 1.19411 1.20056 1.18422 1.21861 0.95855 0.95339 1.14320 1.22955 0.88583 0.98563 0.95024 1.67452 1.10057 1.29137 1.12803 0.90876 0.90805 0.91149 0.85273 0.84660 0.88555 0.86188 0.91518 0.87799 0.82317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.03 10.16 36.00 0.37 -0.66 16 2 C 0.10 1.51 6.78 -82.54 -0.56 0.95 16 3 C -0.17 -2.41 9.72 -39.49 -0.38 -2.79 16 4 C -0.07 -1.15 9.56 -38.95 -0.37 -1.52 16 5 C -0.07 -1.34 5.89 -104.75 -0.62 -1.96 16 6 C 0.00 -0.01 5.91 -104.64 -0.62 -0.63 16 7 C -0.31 -6.66 9.53 -38.81 -0.37 -7.03 16 8 C 0.13 3.00 11.17 -17.60 -0.20 2.80 16 9 N -0.48 -13.12 7.88 -11.20 -0.09 -13.21 16 10 C 0.25 6.84 6.55 -85.02 -0.56 6.28 16 11 C -0.43 -11.31 9.14 -37.70 -0.34 -11.66 16 12 H 0.09 2.09 7.85 -52.49 -0.41 1.68 16 13 C 0.07 1.73 5.49 -17.34 -0.10 1.63 16 14 N -0.71 -18.79 11.49 55.55 0.64 -18.16 16 15 Si 0.91 18.32 29.56 -169.99 -5.03 13.29 16 16 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 17 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 18 H -0.26 -5.15 7.11 56.52 0.40 -4.74 16 19 C -0.25 -6.01 9.23 -38.34 -0.35 -6.36 16 20 C 0.11 1.93 10.62 -17.19 -0.18 1.75 16 21 N -0.49 -8.35 10.26 -9.20 -0.09 -8.44 16 22 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.07 0.58 8.08 -51.92 -0.42 0.16 16 25 H 0.13 1.36 8.06 -52.48 -0.42 0.93 16 26 H 0.14 1.97 6.40 -52.49 -0.34 1.64 16 27 H 0.10 1.80 6.39 -52.49 -0.34 1.47 16 28 H 0.12 2.51 8.06 -52.49 -0.42 2.09 16 29 H 0.27 6.50 8.29 -40.82 -0.34 6.16 16 30 H 0.10 2.27 6.36 -52.49 -0.33 1.94 16 31 H 0.16 2.76 6.31 -52.49 -0.33 2.43 16 LS Contribution 272.34 15.07 4.10 4.10 Total: -1.00 -29.52 272.34 -7.74 -37.26 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -2.99 Total: 4.35 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: -4.28 Total: -19.20 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: 0.46 Total: -39.81 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.52 -7.74 -37.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259620169.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.471 kcal (2) G-P(sol) polarization free energy of solvation -29.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds