Wall clock time and date at job start Sun Mar 29 2020 22:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46496 * 109.47334 * 2 1 4 4 C 1.36939 * 120.00131 * 274.50957 * 3 2 1 5 5 H 1.08000 * 119.99979 * 322.87474 * 4 3 2 6 6 C 1.38809 * 120.00341 * 142.88207 * 4 3 2 7 7 N 1.31614 * 120.00612 * 159.31179 * 6 4 3 8 8 Si 1.86809 * 119.99707 * 339.30653 * 6 4 3 9 9 H 1.48496 * 109.46796 * 95.35686 * 8 6 4 10 10 H 1.48495 * 109.46718 * 215.35431 * 8 6 4 11 11 H 1.48498 * 109.47169 * 335.35759 * 8 6 4 12 12 C 1.46496 * 120.00111 * 94.50384 * 3 2 1 13 13 C 1.50698 * 109.47237 * 95.20331 * 12 3 2 14 14 C 1.38612 * 120.42680 * 97.16333 * 13 12 3 15 15 C 1.38663 * 118.43950 * 180.02562 * 14 13 12 16 16 C 1.38193 * 119.19143 * 0.02562 * 15 14 13 17 17 N 1.31870 * 120.78029 * 359.97438 * 16 15 14 18 18 C 1.31979 * 121.71027 * 0.02562 * 17 16 15 19 19 Cl 1.73600 * 119.63754 * 179.97438 * 18 17 16 20 20 H 1.09003 * 109.47051 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.46949 * 299.99643 * 1 2 3 22 22 H 1.08995 * 109.46997 * 60.00117 * 1 2 3 23 23 H 1.09007 * 109.47551 * 240.00264 * 2 1 3 24 24 H 1.09004 * 109.47575 * 119.99964 * 2 1 3 25 25 H 0.96996 * 120.00704 * 179.97438 * 7 6 4 26 26 H 1.09003 * 109.47171 * 335.20591 * 12 3 2 27 27 H 1.08999 * 109.47649 * 215.20314 * 12 3 2 28 28 H 1.07998 * 120.78054 * 0.04186 * 14 13 12 29 29 H 1.07998 * 120.40380 * 180.02562 * 15 14 13 30 30 H 1.07995 * 119.60646 * 180.26379 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1587 2.0578 -1.1822 5 1 2.5017 1.5379 -2.0646 6 6 1.8603 3.4119 -1.2467 7 7 2.3583 4.1502 -2.2157 8 14 0.7517 4.1863 0.0421 9 1 1.5845 4.7905 1.1129 10 1 -0.0818 5.2399 -0.5906 11 1 -0.1288 3.1441 0.6285 12 6 2.3564 2.0385 1.2648 13 6 3.8347 1.9006 1.5231 14 6 4.7042 2.9276 1.1907 15 6 6.0564 2.7567 1.4460 16 6 6.4902 1.5763 2.0190 17 7 5.6351 0.6194 2.3227 18 6 4.3415 0.7468 2.0942 19 17 3.2639 -0.5475 2.5150 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 2.1495 5.0964 -2.2610 26 1 1.8004 1.5709 2.0773 27 1 2.0949 3.0951 1.2065 28 1 4.3372 3.8396 0.7435 29 1 6.7619 3.5365 1.2000 30 1 7.5413 1.4378 2.2246 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263728956.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:46 Heat of formation + Delta-G solvation = 36.719058 kcal Electronic energy + Delta-G solvation = -15441.874708 eV Core-core repulsion = 12877.288684 eV Total energy + Delta-G solvation = -2564.586025 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.072 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.21011 -38.17499 -37.58201 -34.08461 -33.90540 -32.54410 -30.78804 -27.74869 -25.69679 -24.49696 -23.52546 -21.88053 -19.02883 -18.23897 -17.83530 -17.04305 -16.46246 -16.18787 -15.35231 -15.28387 -14.81021 -14.59317 -14.15226 -14.06753 -13.72012 -13.20895 -12.91516 -12.82018 -12.60785 -12.52841 -12.25186 -11.94912 -11.59603 -11.17897 -10.75096 -10.69435 -10.54386 -9.77546 -8.84028 -8.19766 -5.58749 -0.00747 0.23631 0.83853 1.26041 1.41172 1.50965 2.39142 2.66182 3.09693 3.42497 3.57296 3.77491 3.97888 4.04329 4.34721 4.40023 4.43740 4.58443 4.69269 4.81133 4.82848 5.04896 5.10665 5.23306 5.31321 5.52073 5.60412 5.93297 6.17085 6.73883 6.94127 7.59171 8.02675 8.99694 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.022161 B = 0.012286 C = 0.009081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.185257 B = 2278.384513 C = 3082.606051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.125 3.875 3 N -0.603 5.603 4 C -0.251 4.251 5 H 0.038 0.962 6 C -0.007 4.007 7 N -0.943 5.943 8 Si 0.927 3.073 9 H -0.268 1.268 10 H -0.310 1.310 11 H -0.256 1.256 12 C 0.170 3.830 13 C -0.130 4.130 14 C -0.065 4.065 15 C -0.158 4.158 16 C 0.104 3.896 17 N -0.499 5.499 18 C 0.163 3.837 19 Cl -0.028 7.028 20 H 0.072 0.928 21 H 0.044 0.956 22 H 0.034 0.966 23 H 0.035 0.965 24 H 0.077 0.923 25 H 0.264 0.736 26 H 0.079 0.921 27 H 0.045 0.955 28 H 0.126 0.874 29 H 0.173 0.827 30 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.262 -4.414 10.953 12.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.001 3.999 3 N -0.324 5.324 4 C -0.381 4.381 5 H 0.056 0.944 6 C -0.204 4.204 7 N -0.586 5.586 8 Si 0.756 3.244 9 H -0.195 1.195 10 H -0.239 1.239 11 H -0.181 1.181 12 C 0.044 3.956 13 C -0.136 4.136 14 C -0.092 4.092 15 C -0.177 4.177 16 C -0.053 4.053 17 N -0.210 5.210 18 C -0.001 4.001 19 Cl 0.000 7.000 20 H 0.091 0.909 21 H 0.063 0.937 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.095 0.905 25 H 0.073 0.927 26 H 0.097 0.903 27 H 0.063 0.937 28 H 0.144 0.856 29 H 0.190 0.810 30 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 4.431 -5.199 11.278 13.185 hybrid contribution -1.023 1.370 -0.465 1.772 sum 3.409 -3.830 10.813 11.967 Atomic orbital electron populations 1.22198 0.97935 1.01104 1.00665 1.21420 0.93205 0.84606 1.00703 1.44196 1.74248 1.12450 1.01544 1.18568 1.38281 0.92442 0.88784 0.94429 1.25873 0.98834 0.97169 0.98480 1.69962 1.45399 1.06677 1.36593 0.86117 0.80837 0.77927 0.79472 1.19539 1.23875 1.18056 1.20224 0.88795 0.97359 0.89209 1.21495 1.00682 0.93657 0.97786 1.21652 0.94187 0.98425 0.94949 1.22547 0.95669 1.00370 0.99140 1.23225 1.00061 0.87825 0.94199 1.66982 1.01824 1.32981 1.19256 1.21401 0.89916 0.89232 0.99507 1.98319 1.60817 1.49407 1.91422 0.90921 0.93713 0.94688 0.94678 0.90480 0.92707 0.90284 0.93735 0.85603 0.80993 0.78086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.72 10.22 71.98 0.74 -4.98 16 2 C 0.12 4.96 6.33 86.38 0.55 5.50 16 3 N -0.60 -27.87 2.10 -706.36 -1.48 -29.35 16 4 C -0.25 -13.84 9.91 84.03 0.83 -13.01 16 5 H 0.04 2.35 8.06 -2.91 -0.02 2.33 16 6 C -0.01 -0.36 5.35 84.86 0.45 0.09 16 7 N -0.94 -56.46 13.97 21.65 0.30 -56.15 16 8 Si 0.93 44.11 24.90 68.60 1.71 45.82 16 9 H -0.27 -11.91 6.71 99.48 0.67 -11.24 16 10 H -0.31 -15.12 7.11 99.48 0.71 -14.41 16 11 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 12 C 0.17 7.10 4.37 85.63 0.37 7.47 16 13 C -0.13 -5.06 5.45 -19.75 -0.11 -5.17 16 14 C -0.07 -2.38 9.83 22.46 0.22 -2.15 16 15 C -0.16 -4.38 10.11 22.36 0.23 -4.15 16 16 C 0.10 2.76 11.18 84.68 0.95 3.71 16 17 N -0.50 -16.49 10.34 -186.69 -1.93 -18.42 16 18 C 0.16 5.87 7.27 84.70 0.62 6.49 16 19 Cl -0.03 -0.91 24.31 -2.72 -0.07 -0.97 16 20 H 0.07 2.09 8.14 -2.39 -0.02 2.08 16 21 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 22 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.03 1.45 8.08 -2.38 -0.02 1.43 16 24 H 0.08 2.73 4.25 -2.39 -0.01 2.72 16 25 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 26 H 0.08 2.96 7.13 -2.39 -0.02 2.95 16 27 H 0.04 1.99 2.76 -2.39 -0.01 1.98 16 28 H 0.13 4.94 8.06 -2.91 -0.02 4.91 16 29 H 0.17 3.45 8.06 -2.91 -0.02 3.42 16 30 H 0.20 3.42 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -64.11 263.73 4.48 -59.63 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: 1.11 Total: 5.67 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: 4.84 Total: -6.21 kcal Atomic # 7 Polarization: -100.82 SS G_CDS: -3.11 Total: -103.93 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.71 Total: 45.82 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -0.07 Total: -0.97 kcal Total: -64.11 4.48 -59.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263728956.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.349 kcal (2) G-P(sol) polarization free energy of solvation -64.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds