Wall clock time and date at job start Sun Mar 29 2020 22:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.94069 * 2 1 4 4 C 1.51132 * 109.95487 * 121.28173 * 2 1 3 5 5 C 1.34175 * 127.61636 * 288.69082 * 4 2 1 6 6 C 1.41091 * 107.30542 * 179.68490 * 5 4 2 7 7 C 1.35092 * 107.46727 * 0.09743 * 6 5 4 8 8 Cl 1.73598 * 125.87467 * 180.16337 * 7 6 5 9 9 N 1.36089 * 108.24688 * 0.13905 * 7 6 5 10 10 C 1.46709 * 126.94619 * 179.38308 * 9 7 6 11 11 C 1.53218 * 109.23224 * 161.51552 * 10 9 7 12 12 N 1.47050 * 109.30030 * 46.31130 * 11 10 9 13 13 C 1.36937 * 120.98143 * 115.82772 * 12 11 10 14 14 H 1.08002 * 119.99732 * 340.42479 * 13 12 11 15 15 C 1.38813 * 120.00334 * 160.42694 * 13 12 11 16 16 N 1.31622 * 119.99754 * 339.92023 * 15 13 12 17 17 Si 1.86796 * 120.00349 * 159.92499 * 15 13 12 18 18 H 1.48501 * 109.47236 * 89.99652 * 17 15 13 19 19 H 1.48498 * 109.47004 * 210.00168 * 17 15 13 20 20 H 1.48500 * 109.46850 * 329.99850 * 17 15 13 21 21 H 1.09001 * 109.47297 * 181.19121 * 1 2 3 22 22 H 1.08995 * 109.47247 * 301.19493 * 1 2 3 23 23 H 1.09004 * 109.47039 * 61.19209 * 1 2 3 24 24 H 1.08004 * 126.34875 * 359.65227 * 5 4 2 25 25 H 1.07996 * 126.26391 * 180.09129 * 6 5 4 26 26 H 1.08999 * 109.51326 * 41.58938 * 10 9 7 27 27 H 1.09005 * 109.51334 * 281.44381 * 10 9 7 28 28 H 1.09002 * 109.49903 * 286.36206 * 11 10 9 29 29 H 1.09006 * 109.50254 * 166.25912 * 11 10 9 30 30 H 0.97000 * 120.00182 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9017 1.0247 0.0000 4 6 2.0457 -0.7376 1.2141 5 6 2.0051 -0.3373 2.4940 6 6 2.5976 -1.3550 3.2711 7 6 2.9793 -2.3389 2.4278 8 17 3.7574 -3.8229 2.8816 9 7 2.6484 -1.9667 1.1613 10 6 2.8882 -2.7248 -0.0717 11 6 1.9767 -2.1874 -1.1799 12 7 2.0334 -0.7180 -1.1858 13 6 2.5389 -0.0364 -2.2606 14 1 3.1799 -0.5419 -2.9677 15 6 2.2275 1.3043 -2.4412 16 7 1.1715 1.8202 -1.8486 17 14 3.3069 2.3760 -3.5254 18 1 2.8074 2.3279 -4.9231 19 1 3.2670 3.7766 -3.0334 20 1 4.7043 1.8755 -3.4816 21 1 -0.3634 -1.0274 0.0214 22 1 -0.3633 0.5322 0.8790 23 1 -0.3633 0.4952 -0.9005 24 1 1.5953 0.5920 2.8614 25 1 2.7230 -1.3486 4.3438 26 1 2.6693 -3.7786 0.1005 27 1 3.9303 -2.6129 -0.3712 28 1 0.9521 -2.5113 -0.9973 29 1 2.3129 -2.5684 -2.1443 30 1 0.9541 2.7571 -1.9745 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000284444673.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:43 Heat of formation + Delta-G solvation = 57.119356 kcal Electronic energy + Delta-G solvation = -15569.481612 eV Core-core repulsion = 13005.780210 eV Total energy + Delta-G solvation = -2563.701401 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.072 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.33514 -38.07108 -37.42104 -34.81972 -33.38023 -31.47232 -29.18835 -28.51129 -25.94103 -24.17408 -22.66805 -21.54526 -19.66372 -18.37068 -18.19208 -16.84151 -16.49642 -15.59935 -15.48070 -14.81081 -14.71767 -14.19182 -13.79503 -13.54072 -13.36371 -13.30179 -12.93726 -12.79036 -12.69065 -12.47433 -12.19598 -12.07005 -11.93551 -11.67073 -11.47298 -10.60801 -9.57904 -8.92187 -8.76963 -7.88020 -5.28018 0.83490 1.20121 1.47740 1.51766 1.59101 2.01615 2.13864 2.51366 3.25513 3.48716 3.87007 4.01571 4.23857 4.29662 4.54969 4.65641 4.77731 4.81248 4.88802 5.07881 5.13051 5.19399 5.31797 5.49610 5.63359 5.89352 6.00952 6.22418 6.29466 6.33350 7.10772 7.75655 8.26592 9.17650 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.036048 B = 0.007778 C = 0.007302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.559490 B = 3599.132559 C = 3833.888906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.259 3.741 3 H 0.078 0.922 4 C 0.028 3.972 5 C -0.211 4.211 6 C -0.176 4.176 7 C 0.036 3.964 8 Cl -0.020 7.020 9 N -0.437 5.437 10 C 0.088 3.912 11 C 0.130 3.870 12 N -0.610 5.610 13 C -0.268 4.268 14 H 0.074 0.926 15 C -0.042 4.042 16 N -0.918 5.918 17 Si 0.962 3.038 18 H -0.285 1.285 19 H -0.293 1.293 20 H -0.279 1.279 21 H 0.023 0.977 22 H 0.047 0.953 23 H 0.065 0.935 24 H 0.149 0.851 25 H 0.164 0.836 26 H 0.105 0.895 27 H 0.075 0.925 28 H 0.035 0.965 29 H 0.090 0.910 30 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.380 -8.167 7.074 11.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.153 3.847 3 H 0.095 0.905 4 C -0.086 4.086 5 C -0.236 4.236 6 C -0.203 4.203 7 C -0.100 4.100 8 Cl 0.009 6.991 9 N -0.116 5.116 10 C -0.035 4.035 11 C 0.004 3.996 12 N -0.332 5.332 13 C -0.398 4.398 14 H 0.092 0.908 15 C -0.238 4.238 16 N -0.563 5.563 17 Si 0.791 3.209 18 H -0.212 1.212 19 H -0.219 1.219 20 H -0.204 1.204 21 H 0.042 0.958 22 H 0.066 0.934 23 H 0.084 0.916 24 H 0.167 0.833 25 H 0.182 0.818 26 H 0.123 0.877 27 H 0.093 0.907 28 H 0.053 0.947 29 H 0.108 0.892 30 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.482 -8.374 6.744 11.035 hybrid contribution 0.486 0.557 -0.620 0.965 sum 2.968 -7.818 6.124 10.365 Atomic orbital electron populations 1.21893 0.95991 0.98450 1.01663 1.19058 0.92636 0.93928 0.79112 0.90467 1.21660 1.01841 0.87090 0.98024 1.20624 1.09654 1.01901 0.91380 1.20874 1.06527 0.93233 0.99617 1.20962 1.10581 0.92940 0.85549 1.98320 1.79139 1.31085 1.90601 1.44223 1.45702 1.16073 1.05596 1.22628 1.01695 0.95928 0.83277 1.21249 0.96611 0.84706 0.97044 1.44533 1.72738 1.00512 1.15437 1.19455 1.22820 0.93771 1.03708 0.90799 1.25531 0.97824 0.99396 1.01057 1.70136 1.24774 1.13246 1.48164 0.85369 0.79053 0.78130 0.78357 1.21196 1.21950 1.20396 0.95806 0.93411 0.91597 0.83324 0.81830 0.87741 0.90656 0.94653 0.89215 0.93886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.39 9.08 71.98 0.65 -4.73 16 2 C 0.26 12.17 2.40 44.19 0.11 12.27 16 3 H 0.08 4.16 6.24 -2.38 -0.01 4.15 16 4 C 0.03 1.16 5.96 40.96 0.24 1.40 16 5 C -0.21 -7.82 10.80 22.04 0.24 -7.58 16 6 C -0.18 -5.76 10.84 22.25 0.24 -5.52 16 7 C 0.04 1.21 7.44 83.31 0.62 1.83 16 8 Cl -0.02 -0.53 29.07 -2.72 -0.08 -0.61 16 9 N -0.44 -16.40 3.15 -497.77 -1.57 -17.97 16 10 C 0.09 2.94 6.92 86.41 0.60 3.54 16 11 C 0.13 5.01 6.36 86.35 0.55 5.56 16 12 N -0.61 -29.13 2.68 -677.25 -1.81 -30.95 16 13 C -0.27 -13.99 9.68 84.03 0.81 -13.17 16 14 H 0.07 3.73 7.90 -2.91 -0.02 3.70 16 15 C -0.04 -2.22 4.93 84.86 0.42 -1.80 16 16 N -0.92 -50.24 9.21 21.65 0.20 -50.04 16 17 Si 0.96 43.36 29.60 68.60 2.03 45.39 16 18 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 19 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 21 H 0.02 0.99 7.51 -2.39 -0.02 0.97 16 22 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 23 H 0.07 3.32 6.48 -2.38 -0.02 3.30 16 24 H 0.15 5.00 8.06 -2.91 -0.02 4.98 16 25 H 0.16 4.32 8.06 -2.91 -0.02 4.30 16 26 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 27 H 0.08 2.52 8.14 -2.38 -0.02 2.51 16 28 H 0.04 1.36 7.50 -2.39 -0.02 1.34 16 29 H 0.09 3.17 7.93 -2.38 -0.02 3.15 16 30 H 0.25 13.47 8.31 -92.71 -0.77 12.70 16 Total: -1.00 -57.12 261.86 4.39 -52.73 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: 1.14 Total: 9.64 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: 4.48 Total: -8.20 kcal Atomic # 7 Polarization: -95.77 SS G_CDS: -3.18 Total: -98.96 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -0.08 Total: -0.61 kcal Total: -57.12 4.39 -52.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284444673.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.854 kcal (2) G-P(sol) polarization free energy of solvation -57.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds