Wall clock time and date at job start Sun Mar 29 2020 23:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.34368 * 125.83002 * 2 1 4 4 C 1.31266 * 109.30973 * 180.19101 * 3 2 1 5 5 S 1.76193 * 125.80494 * 179.83510 * 4 3 2 6 6 C 1.81002 * 100.00049 * 359.68994 * 5 4 3 7 7 C 1.53000 * 109.47004 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.46886 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.47291 * 179.97438 * 8 7 6 10 10 H 1.08006 * 119.99920 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00428 * 179.97438 * 9 8 7 12 12 N 1.31520 * 120.00162 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 119.99868 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.47023 * 90.00014 * 13 11 9 15 15 H 1.48496 * 109.47251 * 210.00457 * 13 11 9 16 16 H 1.48498 * 109.47139 * 330.00202 * 13 11 9 17 17 N 1.36115 * 108.39001 * 359.56714 * 4 3 2 18 18 H 0.97003 * 126.50044 * 180.23568 * 17 4 3 19 19 C 1.34384 * 125.83127 * 179.71688 * 2 1 3 20 20 C 1.50705 * 126.51620 * 359.96523 * 19 2 1 21 21 H 1.09000 * 109.47204 * 270.28578 * 1 2 3 22 22 H 1.09000 * 109.46824 * 30.28133 * 1 2 3 23 23 H 1.08995 * 109.46859 * 150.27901 * 1 2 3 24 24 H 1.09002 * 109.47115 * 60.00094 * 6 5 4 25 25 H 1.09001 * 109.46925 * 300.00251 * 6 5 4 26 26 H 1.09001 * 109.47194 * 299.99731 * 7 6 5 27 27 H 1.08992 * 109.47399 * 59.99903 * 7 6 5 28 28 H 1.09001 * 109.47109 * 299.99380 * 8 7 6 29 29 H 1.09002 * 109.47508 * 59.99571 * 8 7 6 30 30 H 0.96996 * 119.99309 * 179.97438 * 12 11 9 31 31 H 1.09003 * 109.47026 * 269.99836 * 20 19 2 32 32 H 1.09002 * 109.47307 * 29.99469 * 20 19 2 33 33 H 1.08997 * 109.47092 * 150.00304 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2935 1.0894 0.0000 4 6 3.5520 0.7161 -0.0041 5 16 4.9465 1.7930 -0.0099 6 6 4.1059 3.3959 -0.0179 7 6 5.1465 4.5175 -0.0245 8 6 4.4358 5.8725 -0.0306 9 6 5.4607 6.9772 -0.0364 10 1 6.5137 6.7370 -0.0354 11 6 5.0543 8.2947 -0.0430 12 7 5.9488 9.2589 -0.0476 13 14 3.2331 8.7103 -0.0455 14 1 2.7502 8.8273 1.3540 15 1 3.0203 9.9989 -0.7520 16 1 2.4809 7.6348 -0.7403 17 7 3.5964 -0.6443 0.0029 18 1 4.3946 -1.1955 0.0051 19 6 2.2937 -1.0895 0.0054 20 6 1.8367 -2.5256 0.0132 21 1 -0.3633 0.0051 1.0276 22 1 -0.3633 0.8875 -0.5182 23 1 -0.3633 -0.8924 -0.5095 24 1 3.4823 3.4836 0.8718 25 1 3.4819 3.4745 -0.9081 26 1 5.7708 4.4391 0.8656 27 1 5.7697 4.4297 -0.9143 28 1 3.8113 5.9512 -0.9204 29 1 3.8128 5.9600 0.8595 30 1 5.6627 10.1857 -0.0527 31 1 1.7270 -2.8663 1.0428 32 1 0.8781 -2.6046 -0.4997 33 1 2.5743 -3.1444 -0.4976 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338580102.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:02:26 Heat of formation + Delta-G solvation = 26.621497 kcal Electronic energy + Delta-G solvation = -14194.725890 eV Core-core repulsion = 11767.578803 eV Total energy + Delta-G solvation = -2427.147087 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 240.099 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.92425 -34.62181 -33.20139 -32.79018 -32.05677 -28.74905 -27.98916 -25.83670 -23.21447 -21.93530 -20.23166 -19.75402 -18.23024 -16.70208 -15.96464 -15.66355 -14.67760 -14.62050 -13.99253 -13.58951 -13.25465 -13.20571 -12.99571 -12.66443 -12.52755 -12.27653 -12.12673 -12.04714 -11.34498 -10.86142 -10.47655 -10.08815 -10.01115 -9.92278 -9.74925 -9.62803 -9.20036 -9.05860 -8.52610 -7.28195 -6.03317 -4.01907 1.33273 1.78015 2.38232 2.90400 3.17419 3.33789 3.41056 3.45800 4.47188 4.62447 4.79970 4.88959 5.12348 5.19159 5.30493 5.48003 5.50030 5.52711 5.61182 5.71876 5.84929 6.02672 6.06604 6.38702 6.50514 6.61893 6.80806 7.08509 7.26066 7.38832 7.78118 7.85257 8.53511 9.00944 9.58772 11.09980 Molecular weight = 240.10amu Principal moments of inertia in cm(-1) A = 0.041323 B = 0.004450 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.431550 B = 6291.139228 C = 6932.216723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.010 3.990 3 N -0.482 5.482 4 C 0.205 3.795 5 S -0.044 6.044 6 C -0.083 4.083 7 C -0.091 4.091 8 C -0.006 4.006 9 C -0.522 4.522 10 H 0.073 0.927 11 C 0.067 3.933 12 N -0.903 5.903 13 Si 0.879 3.121 14 H -0.276 1.276 15 H -0.288 1.288 16 H -0.264 1.264 17 N -0.557 5.557 18 H 0.420 0.580 19 C -0.028 4.028 20 C -0.073 4.073 21 H 0.067 0.933 22 H 0.070 0.930 23 H 0.067 0.933 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.020 0.980 29 H 0.015 0.985 30 H 0.263 0.737 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.244 -23.462 0.071 24.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 N -0.206 5.206 4 C -0.166 4.166 5 S 0.187 5.813 6 C -0.232 4.232 7 C -0.131 4.131 8 C -0.045 4.045 9 C -0.560 4.560 10 H 0.091 0.909 11 C -0.134 4.134 12 N -0.542 5.542 13 Si 0.706 3.294 14 H -0.202 1.202 15 H -0.214 1.214 16 H -0.189 1.189 17 N -0.165 5.165 18 H 0.258 0.742 19 C -0.145 4.145 20 C -0.131 4.131 21 H 0.086 0.914 22 H 0.089 0.911 23 H 0.086 0.914 24 H 0.109 0.891 25 H 0.109 0.891 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.038 0.962 29 H 0.033 0.967 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.382 -22.701 0.071 23.871 hybrid contribution -1.463 -0.474 0.032 1.538 sum -8.845 -23.175 0.103 24.805 Atomic orbital electron populations 1.20043 0.87602 1.02588 1.02184 1.20550 0.96436 0.87971 1.07105 1.70730 0.98684 1.30044 1.21115 1.25197 0.98465 0.84739 1.08232 1.85522 1.02589 1.00004 1.93197 1.23789 1.01870 0.90837 1.06695 1.21361 0.96327 0.93020 1.02358 1.19551 0.96615 0.91607 0.96749 1.21103 0.94263 0.89578 1.51023 0.90908 1.25015 0.97553 0.96372 0.94480 1.69916 1.33541 0.99693 1.51065 0.86782 0.86078 0.77911 0.78595 1.20223 1.21366 1.18862 1.43215 1.08076 1.06472 1.58703 0.74204 1.21081 0.83278 0.97261 1.12855 1.20198 1.01768 0.88480 1.02641 0.91399 0.91072 0.91424 0.89068 0.89073 0.91702 0.91670 0.96215 0.96653 0.92705 0.90970 0.89920 0.91791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.67 10.21 36.00 0.37 -0.30 16 2 C 0.01 0.14 7.08 -82.84 -0.59 -0.45 16 3 N -0.48 -7.99 10.60 -9.68 -0.10 -8.10 16 4 C 0.21 3.10 8.26 -88.75 -0.73 2.37 16 5 S -0.04 -0.67 22.31 -107.50 -2.40 -3.07 16 6 C -0.08 -1.44 5.20 37.16 0.19 -1.25 16 7 C -0.09 -1.81 5.16 -26.73 -0.14 -1.95 16 8 C -0.01 -0.14 4.04 -27.88 -0.11 -0.25 16 9 C -0.52 -14.96 9.66 -34.44 -0.33 -15.29 16 10 H 0.07 2.23 7.99 -52.48 -0.42 1.81 16 11 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 12 N -0.90 -28.07 13.96 55.43 0.77 -27.29 16 13 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 16 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 17 N -0.56 -6.56 6.24 -8.98 -0.06 -6.62 16 18 H 0.42 3.61 8.96 -40.82 -0.37 3.24 16 19 C -0.03 -0.31 7.25 -81.32 -0.59 -0.90 16 20 C -0.07 -0.49 10.21 36.01 0.37 -0.12 16 21 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 22 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 23 H 0.07 0.50 7.14 -51.93 -0.37 0.13 16 24 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 25 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 26 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 27 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.02 0.47 7.20 -51.93 -0.37 0.10 16 29 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 30 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.46 7.14 -51.93 -0.37 0.09 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 293.30 15.07 4.42 4.42 Total: -1.00 -32.97 293.30 -8.54 -41.51 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -4.84 Total: -1.87 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -1.66 Total: -16.27 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: 0.61 Total: -42.01 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Atomic # 16 Polarization: -0.67 SS G_CDS: -2.40 Total: -3.07 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -32.97 -8.54 -41.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338580102.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.129 kcal (2) G-P(sol) polarization free energy of solvation -32.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds